Peer Review History

Original SubmissionAugust 29, 2022
Decision Letter - Pavel Strnad, Editor

PONE-D-22-24135Non-alcoholic Fatty Liver Disease is Not Associated with Impairment in Health-related Quality of Life in Virally Suppressed Persons with Human Immune Deficiency VirusPLOS ONE

Dear Dr. Gawrieh,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. As you can see, both reviewers appreciated your work and only relatively minor changes are needed.

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We look forward to receiving your revised manuscript.

Kind regards,

Pavel Strnad

Academic Editor

PLOS ONE

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3. Thank you for stating the following in the Competing Interests section: 

"Dr. Gawrieh consulting: TransMedics, Pfizer. Research grant support: Cirius, Galmed, Viking and Zydus. Dr. Corey serves on the scientific advisory board for Theratechnologies, Novo Nordisk and BMS and has received grant funding from Boehringer-Ingelheim, BMS and Novartis, Dr. Lake receives research support from Gilead Sciences and Zydus. In the past 12 months she has received research support from Pfizer, CytoDyn, and Oncoimmune, and has served as a consultant to Merck and Theratechnologies, Dr. Samala, Dr. Desai, Dr. Debroy, Ms.Sjoquist, Ms. Robison, Ms. Bhamidipalli, Dr. Saha, Dr. Zachary, Dr. Akisik, and Dr. Tann have nothing to disclose. Dr. Robbin has served as a consultant for SEED , Dr. Gupta reports consultancy/advisory fees from Gilead Sciences, Inc. and ViiV Healthcare and research support from the NIH, Indiana University School of Medicine, and ViiV HealthCare, Dr. Chung has received research grant support (to institution) from Boehringer Ingelheim, BMS, Roche, Gilead, Janssen, and GSK , Dr. Chalasani has ongoing research support from Eli Lilly, Galectin Therapeutics, Intercept, and Exact Sciences, In the past 12 months, he has received consulting fees from Abbvie, Madrigal, Nusirt, Allergan, Siemens, Genentech, Zydus, La Jolla, Axcella, Foresite Labs, and Galectin Therapeutics."

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6. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

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2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: I Don't Know

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3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

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5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: This analysis assesses quality of life in NAFLD with a generic tool and compared HIV-infected and non-infected patients. The strength is the large cohort and the presence of a control group. Limitations arise from the use of a single non-liver disease and non-HIV specific tool. Overall, this is an important study and the information will guide the field. I have included comments below:

The abstract needs to be checked – in the first sentence liver “disease” is missing

The prevalence of hepatic steatosis exceeds the estimates in the general population by far! This is an interesting observation that has been captured in other cohorts, e.g. PMID: 35996039. Do the authors consider screening for NAFLD in HIV ? A section in the discussion would be welcome. The same study reported on an HIV-specific tool and observed impact of significant fibrosis on QoL – this could be added in the discussion (PMID: 35996039)

It could be mentioned that alcohol assessment (ADUIT >8) leaves room for harmful alcohol consumption if not assessed clinically.

QoL is strongly impacted by sex with women reporting lower levels of QoL in all analysis. I could not see lower OoL in this analysis (table 2) – clearly here a male dominance and transgender aspect could be the reason for this. Then again male sex was associated with higher levels in supp. Table 3. Please comment.

Please indicate when the SF-36 was completed in relation to the diagnostic test for NAFLD. At the same time? Up to 6 or 12 month ?

In the literature there have been reports of TAF impacting obesity – can you provide data on the ART backbone?

Reviewer #2: The authors describes very well Quality of life related outcomes in PLWH.

However some additional data are required:

-In table 1 must be added the antiretroviral drug classes that PLWH are taking and the duration of HIV infection

-nadir CD4 is significantly associated with HRQOL ; how many patients were affected by severe opportunistic infections during their clinical history?

-no data on therapy for diabetes are included ; it could be better to have data on the percentages of patients on therapy because these data could impact on HRQOL

**********

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Reviewer #1: Yes: Jörn Schattenberg

Reviewer #2: No

**********

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Revision 1

December 7, 2022

Dr. Pavel Strnad

Academic Editor

PLOS One

Manuscript PONE-D-22-24135: “Non-alcoholic Fatty Liver Disease is Not Associated with Impairment in Health-related Quality of Life in Virally Suppressed Persons with Human Immune Deficiency Virus”

Dear Dr. Strnad,

We would like to thank you and the Reviewers for your insightful and constructive comments that have helped us improve and strengthen our manuscript. Based on your comments, we have modified the manuscript. Below, we have addressed all specific comments individually and made the corresponding changes to the draft.

Competing interests: Dr. Gawrieh consulting: TransMedics, Pfizer. Research grant support: Viking, Zydus, and Sonic Incytes. Dr. Corey serves on the scientific advisory board for Theratechnologies, Novo Nordisk and BMS and has received grant funding from Boehringer-Ingelheim, BMS and Novartis, Dr. Lake receives research support from Gilead Sciences and Zydus. In the past 12 months she has received research support from Pfizer, CytoDyn, and Oncoimmune, and has served as a consultant to Merck and Theratechnologies, Dr. Samala, Dr. Desai, Dr. Debroy, Ms. Sjoquist, Ms. Robison, Ms. Bhamidipalli, Dr. Saha, Dr. Zachary, and Dr. Tann have nothing to disclose , Dr. Akisik…., Dr. Robbin has served as a consultant for SEED , Dr. Gupta reports consultancy/advisory fees from Gilead Sciences, Inc. and ViiV Healthcare and research support from the NIH, Indiana University School of Medicine, and ViiV HealthCare, Dr. Chung has received research grant support (to institution) from Boehringer Ingelheim, BMS, Roche, Gilead, Janssen, and GSK , Dr. Chalasani has ongoing research support from Eli Lilly, Galectin Therapeutics, Intercept, and Exact Sciences, In the past 12 months, he has received consulting fees from Abbvie, Madrigal, Nusirt, Allergan, Siemens, Genentech, Zydus, La Jolla, Axcella, Foresite Labs, and Galectin Therapeutics.

This does not alter our adherence to PLOS ONE policies on sharing data and materials

We hope you will consider our revised paper for publication in PLOS One.

Sincerely,

Samer Gawrieh, MD on behalf of all the authors

Indiana University School of Medicine

Journal Comments

Journal Requirements:

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at

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https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

Authors response: Done. We have reformatted our manuscript according to PLOS ONE's style requirements.

2. Please include your full ethics statement in the ‘Methods’ section of your manuscript file. In your statement, please include the full name of the IRB or ethics committee who approved or waived your study, as well as whether or not you obtained informed written or verbal consent. If consent was waived for your study, please include this information in your statement as well.

Authors response: Done. These statements are now included in the methods:

“ Each participant provided a signed informed consent. The study protocol was approved by each site’s Institutional Review Board (IRB).”

AND

“Indiana University IRB approved the protocol. Each participant provided a signed informed consent.”

3. Thank you for stating the following in the Competing Interests section:

"Dr. Gawrieh consulting: TransMedics, Pfizer. Research grant support: Cirius, Galmed, Viking and Zydus. Dr. Corey serves on the scientific advisory board for Theratechnologies, Novo Nordisk and BMS and has received grant funding from Boehringer-Ingelheim, BMS and Novartis, Dr. Lake receives research support from Gilead Sciences and Zydus. In the past 12 months she has received research support from Pfizer, CytoDyn, and Oncoimmune, and has served as a consultant to Merck and Theratechnologies, Dr. Samala, Dr. Desai, Dr. Debroy, Ms.Sjoquist, Ms. Robison, Ms. Bhamidipalli, Dr. Saha, Dr. Zachary, Dr. Akisik, and Dr. Tann have nothing to disclose. Dr. Robbin has served as a consultant for SEED , Dr. Gupta reports consultancy/advisory fees from Gilead Sciences, Inc. and ViiV Healthcare and research support from the NIH, Indiana University School of Medicine, and ViiV HealthCare, Dr. Chung has received research grant support (to institution) from Boehringer Ingelheim, BMS, Roche, Gilead, Janssen, and GSK , Dr. Chalasani has ongoing research support from Eli Lilly, Galectin Therapeutics, Intercept, and Exact Sciences, In the past 12 months, he has received consulting fees from Abbvie, Madrigal, Nusirt, Allergan, Siemens, Genentech, Zydus, La Jolla, Axcella, Foresite Labs, and Galectin Therapeutics."

Please confirm that this does not alter your adherence to all PLOS ONE policies on sharing data and materials, by including the following statement: ""This does not alter our adherence to PLOS ONE policies on sharing data and materials.” (as detailed online in our guide for authors http://journals.plos.org/plosone/s/competing-interests). If there are restrictions on sharing of data and/or materials, please state these. Please note that we cannot proceed with consideration of your article until this information has been declared.

Authors response: This statement has now been added to the competing interests section:

“This does not alter our adherence to PLOS ONE policies on sharing data and materials.”

Please include your updated Competing Interests statement in your cover letter; we will change the online submission form on your behalf.

Authors response: Done. Thank you.

4. Please include a copy of Table 4 which you refer to in your text on page 14.

Authors response: Sorry about that. We have now included Table 4.

5. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information.

Authors response: We have now included matching captions for the supporting information in the text and at the end of the manuscript.

6. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

Authors response: Reference list is correct. To our knowledge, no reference has been retracted. We have added the reference suggested by Reviewer #1.

Reviewer #1:

The abstract needs to be checked – in the first sentence liver “disease” is missing

Authors response: Thank you for catching this. We have now checked the abstract again. We also added the word “disease” to the first sentence

The prevalence of hepatic steatosis exceeds the estimates in the general population by far! This is an interesting observation that has been captured in other cohorts, e.g. PMID: 35996039. Do the authors consider screening for NAFLD in HIV ? A section in the discussion would be welcome.

Authors response: Thank you for this important comment. We have now added the following section in the discussion to highlights the need for screening for NAFLD in PWH:

As reported in our study, PWH have very high prevalence of NAFLD ranging from 35-59%, and those with HIV-NAFLD have prevalence of significant fibrosis ranging from 7-20% (15, 36, 43). Thus, these data suggest that screening for high risk NAFLD with hepatic fibrosis is warranted in PWH.

The same study reported on an HIV-specific tool and observed impact of significant fibrosis on QoL – this could be added in the discussion (PMID: 35996039)

Authors response: Thank you for this note. We have now added the following section in the discussion to highlights this study:

In a follow up study, the same group from Germany used an HIV-specific tool (MOS-HIV survey) to assess HRQOL in PWH (37). In addition to confirming the importance of metabolic factors, lower socioeconomic status and presence of significant fibrosis were also noted to negatively affect the HRQOL in PLWH.

It could be mentioned that alcohol assessment (ADUIT >8) leaves room for harmful alcohol consumption if not assessed clinically.

Authors response: Thank you for this comment. At your suggestion, we have now added the following paragraph to the discussion.

In this study, we applied an alcohol use questionnaire, AUDIT, to survey participants for excessive and harmful drinking. While this may not be feasible in clinical practice, obtaining alcohol consumption history during clinical encounters is a feasible and alternative way to screen for harmful alcohol consumption.

QoL is strongly impacted by sex with women reporting lower levels of QoL in all analysis. I could not see lower OoL in this analysis (table 2) – clearly here a male dominance and transgender aspect could be the reason for this. Then again male sex was associated with higher levels in supp. Table 3. Please comment.

Authors response: We thank the Reviewer for this comment. Please allow us to clarify.

When we look at HRQOL specifically in PWH, we see numerical but non-significant differences in PCS and MCS between women and men (Supplemental table 1). Indeed, after adjusting for covariates, gender was not an independent factor influencing PCS or MCS in PWH (Table 3 multivariable analysis of HRQOL in PWH).

When we look at ALL patients with NAFLD (with and without HIV), data shown in supplementary Table 3 (Univariate analysis) and main Table 5 (multivariate analysis), women had significantly lower PCS and MCS than men.

To clarify this, we have added the following paragraph in the discussion

In PWH, we did not observe an independent association between gender and HRQOL. However, in patients with NAFLD (with and without HIV), male sex was independently associated with better HRQOL as reflected by better PCS and MCS.

Please indicate when the SF-36 was completed in relation to the diagnostic test for NAFLD. At the same time? Up to 6 or 12 month ?

Authors response: The SF-36 was completed the same day of the diagnostic testing for NAFLD (ultrasound and Fibroscan). We have now clarified this in the methods and added the following sentence

At the time of enrollment (same day of the diagnostic testing for NAFLD), participants also completed the 36-item Short Form (SF-36) Health Survey version 1.0.

In the literature there have been reports of TAF impacting obesity – can you provide data on the ART backbone?

Authors response: Thank you for this suggestion. We have now added the detailed ART data to Table 1. The Reviewer is correct, there was a trend for PWH with NAFLD to have higher exposure to TAF. We have added the following sentence to the results to summarize additional the ART data:

PWH with HIV NAFLD, compared to PWH without HIV NAFLD tended to have longer duration of HIV infection (16.6 (10.1) vs 14.0 (9.6) years, P =0.07), had more exposure to non-nucleoside reverse transcriptase inhibitors (20.8% vs 11.5%, P = 0.05) and Tenofovir Alafenamide (72.4% vs 59%, P = 0.06).

Reviewer #2:

-In table 1 must be added the antiretroviral drug classes that PLWH are taking and the duration of HIV infection

Authors response: Thank you for this suggestion. We have now added these data to Table 1 and updated the results sections to reflect that by adding this paragraph:

PWH with HIV NAFLD, compared to PWH without HIV NAFLD tended to have longer duration of HIV infection (16.6 (10.1) vs 14.0 (9.6) years, P =0.07), had more exposure to non-nucleoside reverse transcriptase inhibitors (20.8% vs 11.5%, P = 0.05) and Tenofovir Alafenamide 72.4% vs 59%, P = 0.06).

-nadir CD4 is significantly associated with HRQOL ; how many patients were affected by severe opportunistic infections during their clinical history?

Authors response: Thank you for this suggestion. We have now added the proportion of participants with nadir CD4 <200 and history of AIDS data to table 1 and added the following paragraph to the results:

There were no differences between the two groups in age, proportion with history of acquired immunodeficiency syndrome, absolute or nadir CD4+ T cell counts, proportion with nadir CD4 <200, ART exposure, or HIV-1 RNA suppression levels Table 1.

-no data on therapy for diabetes are included ; it could be better to have data on the percentages of patients on therapy because these data could impact on HRQOL

Authors response: Thank you for this suggestion. All PWH who had diabetes were on hypoglycemic agents with a trend for PWH with NAFLD to be on these more than PWH without diabetes. We have now added the proportion of participants on diabetes medications to Table 1 and to the results section:

PWH with HIV NAFLD, compared to PWH without HIV NAFLD, …… also tended to have higher frequency of type 2 diabetes (16.8% vs 7.7%, p=0.05) and use of hypoglycemic agents (16.8% vs 7.7%, p=0.05).

Decision Letter - Pavel Strnad, Editor

Non-alcoholic Fatty Liver Disease is Not Associated with Impairment in Health-related Quality of Life in Virally Suppressed Persons with Human Immune Deficiency Virus

PONE-D-22-24135R1

Dear Dr. Gawrieh,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Pavel Strnad

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Thank you for giving me the opportunity to handle this interesting manuscript!

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: I Don't Know

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Nothing to add - thorough analysis - in their revision, my previous comments have been addressed.

Reviewer #2: (No Response)

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: Yes: Jörn M. Schattenberg M.D.

Reviewer #2: No

**********

Formally Accepted
Acceptance Letter - Pavel Strnad, Editor

PONE-D-22-24135R1

Non-alcoholic fatty liver disease is not associated with impairment in health-related quality of life in virally suppressed persons with human immune deficiency virus

Dear Dr. Gawrieh:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

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Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Pavel Strnad

Academic Editor

PLOS ONE

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