Peer Review History
| Original SubmissionSeptember 1, 2021 |
|---|
|
PONE-D-21-27924 Clinical Outcomes, Patient-Reported Outcomes, and Economic Burden for Thai People Living with Chronic Urticaria (CORE-CU) in Routine Practice: A Study Protocol for a Monocentric Prospective Longitudinal Study PLOS ONE Dear Dr. Chuamanochan, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. I would like to sincerely apologize for the delay you have incurred with your submission. It has been exceptionally difficult to secure reviewers to evaluate your study. We have now received two completed reviews; the comments are available below. The reviewers have raised significant scientific concerns about the study that need to be addressed in a revision. Please revise the manuscript to address all the reviewer's comments in a point-by-point response in order to ensure it is meeting the journal's publication criteria. Please note that the revised manuscript will need to undergo further review, we thus cannot at this point anticipate the outcome of the evaluation process. Please submit your revised manuscript by Jul 28 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Miquel Vall-llosera Camps Senior Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We note that the grant information you provided in the ‘Funding Information’ and ‘Financial Disclosure’ sections do not match. When you resubmit, please ensure that you provide the correct grant numbers for the awards you received for your study in the ‘Funding Information’ section. 3. We note that you have stated that you will provide repository information for your data at acceptance. Should your manuscript be accepted for publication, we will hold it until you provide the relevant accession numbers or DOIs necessary to access your data. If you wish to make changes to your Data Availability statement, please describe these changes in your cover letter and we will update your Data Availability statement to reflect the information you provide. 4. Please amend either the abstract on the online submission form (via Edit Submission) or the abstract in the manuscript so that they are identical. 5. Your ethics statement should only appear in the Methods section of your manuscript. If your ethics statement is written in any section besides the Methods, please delete it from any other section. 6. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. Additional Editor Comments: Please clarify the status of the participant recruitment: has yet to begin, its ongoing or has already finished? [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Does the manuscript provide a valid rationale for the proposed study, with clearly identified and justified research questions? The research question outlined is expected to address a valid academic problem or topic and contribute to the base of knowledge in the field. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Is the protocol technically sound and planned in a manner that will lead to a meaningful outcome and allow testing the stated hypotheses? The manuscript should describe the methods in sufficient detail to prevent undisclosed flexibility in the experimental procedure or analysis pipeline, including sufficient outcome-neutral conditions (e.g. necessary controls, absence of floor or ceiling effects) to test the proposed hypotheses and a statistical power analysis where applicable. As there may be aspects of the methodology and analysis which can only be refined once the work is undertaken, authors should outline potential assumptions and explicitly describe what aspects of the proposed analyses, if any, are exploratory. Reviewer #1: Yes Reviewer #2: Partly ********** 3. Is the methodology feasible and described in sufficient detail to allow the work to be replicable? Descriptions of methods and materials in the protocol should be reported in sufficient detail for another researcher to reproduce all experiments and analyses. The protocol should describe the appropriate controls, sample size calculations, and replication needed to ensure that the data are robust and reproducible. Reviewer #1: Yes Reviewer #2: No ********** 4. Have the authors described where all data underlying the findings will be made available when the study is complete? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception, at the time of publication. The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above and, if applicable, provide comments about issues authors must address before this protocol can be accepted for publication. You may also include additional comments for the author, including concerns about research or publication ethics. You may also provide optional suggestions and comments to authors that they might find helpful in planning their study. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Thank you for your work on this manuscript and the opportunity to review it. On the whole, I considered your presentation organized and insightful. I would like to offer a few thoughts about the manuscript overall. The first item is to be careful about making the tense be unified throughout. There were several points in the manuscript when I felt confused if you were reporting something that has occurred or something that will occur over the course of the study. Additionally, I thought there could have been slightly more detail on the timeframe associated with the data collection and the outcomes to be reported. As someone unfamiliar with chronic urticaria, I am uncertain what routine clinical care and schedules resemble and I wished I had some additional clarity around this point in thinking about your research study. Narrowing my comments to a few specific items in your manuscript, there are several points where additional clarification might be beneficial for the reader. 1. Study population, 3rd line: The second sentence ends in the word “urticarial.” I couldn’t tell if this was an error or if there was a word missing (or perhaps this is correct). 2. Data collection, study schedule and pre-specified outcomes of interest, paragraph 1, line 1: What does the word “joint” mean in this context? If this is intended to reflect the major data sources that are enumerated after this sentence, I believe this word can be removed for clarity. 3. Same paragraph, line 4: “...an administrative data” should be “an administrative data set” or “an administrative data source.” 4. Same paragraph: Could you provide a little more detail about the “Urticaria Care Database?” It is uncertain if this is something unique to your facility or if it is a broader resource. 5. Same section, paragraph 2: The second sentence indicates that participants will complete the “urticaria symptoms and control diaries.” Can you provide additional detail about what these are? Perhaps a bit more information about the frequency of the data collection and for how long it will be collected? Also, is this something that requires specific procedures for analysis (I am uncertain if these will yield narrative or qualitative data)? 6. Same paragraph: This has a very long sentence at the end which enumerates a number of baseline and control variables. Please consider reformatting this in some way (perhaps a bulleted list or table?) to make this easier to digest. 7. Same section, description of outcomes: As mentioned above, I felt that there could be a bit more description about the timeframe for the outcomes you plan to report. Table 3 seems to indicate that several of the outcomes will be collected monthly and others quarterly. It is the reader’s assumption that the specific time point of interest is for reporting 12-month outcomes. 8. Do participants return to the clinic once per month? Will data collection be altered or be conducted differently if the patient does not return to the clinic? Will 12-month outcomes be reportable for a participant if they provide data at month 11 but not at month 12? Is there a window around the 12-month time point that represents an acceptable range for which you will report an outcome as being collected at 1 year? 9. Statistical analysis, paragraph 1, sentence 2: You note how “differences between treatment groups or severity strata” will be handled. Can you explain more about what the treatment groups are and what the severity strata are? 10. Same section, next paragraph: Are the adverse health outcomes that you plan to analyze defined or can they be defined a priori? If so, it would seem appropriate to do so. In the event that the definitions are the same as those you described in the sample size estimation section, please note this somehow. 11. Same paragraph, last sentence: I believe you meant to use “over time” instead of “overtime.” 12. Informed consent, autonomy and confidentiality, paragraph 2: “All data were anonymous and were not useful in identifying participants.” This sentence is unclear to me. Is your intention to indicate that the screening process for determining potentially eligible patients did not include patient identifiers? 13. Discussion, paragraph 3: “This study would provide comprehensive long-term outcomes and the impact of disease on patients’ daily lives.” Instead of “provide,” would “evaluate” or “document” be a more appropriate word here? 14. Conclusions, sentence 2: Similar to the point above, since the study is not yet completed, I would suggest rewording this sentence to note that the findings either “have the potential to provide” or “seek to provide” comprehensive evidence. 15. Table 3: “Gartering informed consent” likely should be “garnering” or “gathering” instead. Thank you again for your work on this manuscript. Overall, you present a good plan for your research and wish you success in executing the study. Reviewer #2: The authors have provided a strong rationale for this study and the findings will be an important contribution to the literature and may improve clinical care for Thai people with chronic uticaria. Here are questions and comments for the authors to consider: - I am unclear about the current status of recruitment into the study. The manuscript suggests that the participants have already been recruited ("...signed consent"), but goes on to describe how the participants will be prospectively recruited. If recruitment has already commenced, the authors should comment on how actual enrollment has gone relative to projected enrollment, etc. The following questions relate to data collection and management: - The authors say that participants will be followed for as long as possible and at least for one year. In the schedule of observations and procedures, it appears as though there are routine clinical follow-ups at 3, 6, 9, and 12 months and that the clinical data collection will coincide with these time points. The PROs appear to be collected at these time points as well, but also during the interim months. The authors should clarify the official study visit schedule. The authors should also clarify what it means to be followed "for as long as possible". Will follow-ups that extend beyond the 12 month period occur at the same frequency (i.e., every 3 months)? Will the data collection continue to include clinical and PROs? - What will be considered the study database? Is it the REDCap database? How will the data be entered into the database? At one point, it appears as though data collection will be on paper forms (there is a statement that the forms will be kept in locked storage). - The authors should describe how each type of data will be collected and entered into the database. Are the Research Assistants that are helping obtain consent going to do data collection? How will the clinical data from the medical record system and the pharmacologic system be abstracted and entered into the study database? - How will the PRO data be collected? Will the patients be asked to complete forms during their visits at 3, 6, 9, and 12 months? How will the PRO data be collected during the interim periods, e.g., 4 months, 5 months, and so on? - The depression instrument- the PHQ9- has a suicidality item. How will the research team monitor for endorsement of this item and what actions will be taken to address the participant's mental health needs? If there are insufficient resources to be responsive to this item, the research team could consider using the PHQ8 which drops the suicide item. - Will concerted efforts be made to retain participants in the study? Will research team members remain in contact with participants to remind them to complete their study visits, etc? If participants don't show up for visits, will they be contacted and will there be attempts to reschedule them? - How will the above efforts work in conjunction with the data review and validation processes? Will the panel generate reports or review reports that are generated by someone else? Who will maintain the REDCap database? How will have access to the database? It may be helpful for the panel to include a 3rd member in case there is a need to adjudicate particular outcomes. - What will monitoring efforts look like for data collection that extends beyond the 12 month period (i.e., once the cohort all completes the 12 month follow-up)? ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Lauren Allen, DrPH ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
|
PONE-D-21-27924R1Clinical Outcomes, Patient-Reported Outcomes, and Economic Burden for Thai People Living with Chronic Urticaria (CORE-CU) in Routine Practice: A Study Protocol for a Monocentric Prospective Longitudinal StudyPLOS ONE Dear Dr. Chuamanochan, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jan 05 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Filipe Prazeres, MD, MSc, Ph.D. Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Does the manuscript provide a valid rationale for the proposed study, with clearly identified and justified research questions? The research question outlined is expected to address a valid academic problem or topic and contribute to the base of knowledge in the field. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Is the protocol technically sound and planned in a manner that will lead to a meaningful outcome and allow testing the stated hypotheses? The manuscript should describe the methods in sufficient detail to prevent undisclosed flexibility in the experimental procedure or analysis pipeline, including sufficient outcome-neutral conditions (e.g. necessary controls, absence of floor or ceiling effects) to test the proposed hypotheses and a statistical power analysis where applicable. As there may be aspects of the methodology and analysis which can only be refined once the work is undertaken, authors should outline potential assumptions and explicitly describe what aspects of the proposed analyses, if any, are exploratory. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Is the methodology feasible and described in sufficient detail to allow the work to be replicable? Descriptions of methods and materials in the protocol should be reported in sufficient detail for another researcher to reproduce all experiments and analyses. The protocol should describe the appropriate controls, sample size calculations, and replication needed to ensure that the data are robust and reproducible. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors described where all data underlying the findings will be made available when the study is complete? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception, at the time of publication. The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above and, if applicable, provide comments about issues authors must address before this protocol can be accepted for publication. You may also include additional comments for the author, including concerns about research or publication ethics. You may also provide optional suggestions and comments to authors that they might find helpful in planning their study. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Thank you again for your work on the revised manuscript and the opportunity to review it. On the whole, you did a great job responding to the reviewer comments and I find the manuscript very much improved as a result. I would like to offer one additional comment based on your revised text prompted by one of my original comments (#12). You have revised the sentence in question to read, "All data were anonymous and are not able to identify the participants' information." After reviewing this paragraph, I feel the key element to refine here has to do with the timing of the data use in question and subsequently the word tense to describe it. "All data were anonymous" leads me to believe that this is an activity already taken and you were perhaps reviewing de-identified records as part of the screening process. But from the context, I believe you might be trying to convey thoughts about the security of the data you are assembling and using as part of this study. That is, you are maintaining the study data in a de-identified manner so any patient identifiers are not part of the analysis and the only way to know who a particular patient is would be to revisit a source document from a separate and secure location (locked file cabinet). If this is the case (referring to data security), the sentence could be made clearer. For example, "Data gathered are stored in the study database without identifiers and linking information is kept separate in a locked filing cabinet." Thank you again for your attentive response. Reviewer #2: Thank you for addressing my previous comments. In reading the revision, I only have 3 remaining comments: 1. Consider clarifying how participants' final status will be determined. - There is a nice description of how reminders will be sent to participants at the time they are due for clinical follow-up. If the participant does not show up in clinic, how will the study team determine if they are deceased, transferred, or lost to follow-up? - If none of these 3 dispositions are relevant to the given participant, will the follow-up be considered missed? - When will the participant be considered a withdrawal? Is it if they actively state that they no longer wish to participate, or will the study team withdraw participants who continue to be no-shows to visits and/or unresponsive? 2. When will analyses be performed? Will analyses be based on a subset of the database population, i.e., a study population? If so, how will inclusion in the study population be determined, e.g., based on complete data, etc.? The RESTORE guidelines suggest that a flow chart as a possible way to present this information. 3. In the Informed Consent section, there are a few spots where the tense is confusing or mixed within sentence. You should consider revising this section to make it more clear that participants have already been consented and that the study team will continue to obtain informed consent, all per the ethical guidelines. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
|
Clinical Outcomes, Patient-Reported Outcomes, and Economic Burden for Thai People Living with Chronic Urticaria (CORE-CU) in Routine Practice: A Study Protocol for a Monocentric Prospective Longitudinal Study PONE-D-21-27924R2 Dear Dr. Chuamanochan, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Filipe Prazeres, MD, MSc, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
|
PONE-D-21-27924R2 Clinical Outcomes, Patient-Reported Outcomes, and Economic Burden for Thai People Living with Chronic Urticaria (CORE-CU) in Routine Practice: A Study Protocol for a Monocentric Prospective Longitudinal Study Dear Dr. Chuamanochan: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Prof. Filipe Prazeres Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .