Peer Review History
| Original SubmissionJune 17, 2022 |
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PONE-D-22-17429In vivo chromatic and spatial tuning of foveolar retinal ganglion cells in Macaca fascicularisPLOS ONE Dear Dr. Godat, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ==============================Please address all reviewers' comments in your review, in particular the requests for the raw data and visual aids explaining the methods. ============================== Please submit your revised manuscript by Sep 25 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Kind regards, Manuel Spitschan Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Thank you for stating the following in the Competing Interests section: I have read the journal’s policy and the authors of this manuscript have the following competing interests: D.R.W. and W.H.M. receive funding from the National Eye Institute. D.R.W. has received additional funding from The Arnold and Mabel Beckman Foundation, Alcon, and Warby Parker, and W.H.M. receives funding from Research to Prevent Blindness. D.H.B. receives funding from the National Institutes of Health, Johnson & Johnson, and Facebook Reality Labs. D.R.W. has patents with the University of Rochester for adaptive optics imaging of the retina: US patent #6,199,986 “Rapid, automatic measurement of the eye’s wave aberration”. US patent #6,264,328 “Wavefront sensor with off-axis illumination” and US patent 6,338,559 “Apparatus and method for improving vision and retinal imaging”. Q.Y. has patents with the University of Rochester, Canon Inc. and the University of Montana, for image stabilization algorithms: US patent #9,226,656: “Real-time optical and digital image stabilization for adaptive optics scanning ophthalmoscopy”, US patent # 9,406,133: “System and method for real-time image registration”, US patent #: 9,485,383, “Imaging based correction of distortion from a scanner” and US patent #:9,454,084, “Light source modulation for a scanning microscope”. D.H.B. is an inventor on US patent App. 16/389,942. Additionally. Q.Y. has undertaken consultancy work for Oculus VR and Boston Micromachine Corporation. These competing interests do not alter our adherence to PLOS ONE policies on sharing data and materials. We note that you received funding from commercial sources: National Eye Institute, Arnold and Mabel Beckman Foundation, Alcon, and Warby Parker, Johnson & Johnson, and Facebook Reality Lab. Please provide an amended Competing Interests Statement that explicitly states this commercial funder, along with any other relevant declarations relating to employment, consultancy, patents, products in development, marketed products, etc. Within this Competing Interests Statement, please confirm that this does not alter your adherence to all PLOS ONE policies on sharing data and materials by including the following statement: "This does not alter our adherence to PLOS ONE policies on sharing data and materials.” (as detailed online in our guide for authors http://journals.plos.org/plosone/s/competing-interests). If there are restrictions on sharing of data and/or materials, please state these. 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We require that authors provide all relevant data within the paper, Supporting Information files, or in an acceptable, public repository. Please add a citation to support this phrase or upload the data that corresponds with these findings to a stable repository (such as Figshare or Dryad) and provide and URLs, DOIs, or accession numbers that may be used to access these data. Or, if the data are not a core part of the research being presented in your study, we ask that you remove the phrase that refers to these data. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: N/A Reviewer #2: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: In this study, Godat and colleagues investigate response properties from foveolar retinal ganglion cells (RGCs) in the non-human primate retina using in vivo functional imaging. They combine adaptive optics ophthalmoscopy with calcium imaging to optically record the activity of RGCs virally transduced with calcium indicator. Indeed, the fovea structure makes it possible to stimulate foveolar cones while recording calcium responses evoked in the corresponding RGCs in two spatially distinct areas. Such an approach had recently been reported by the same group (McGregor et al, Nat com 2020) to evaluate a strategy of vision restoration via optogenetic therapy. In this manuscript, they demonstrate its interest in basic science. First, they functionally sort the RGCs using chromatic stimuli. They separate putative midget RGCs, determine their spatial frequency function, and model their receptive field. Interestingly, they found higher spatial sensitivity compared to previous studies suggesting that measures collected through animal optics (cornea, aqueous, lens, and vitreous) may not faithfully represent the RGCs properties and/or that properties from more eccentric RGCs may differ. Overall, this is an interesting manuscript. Importantly, the authors carefully report the limitations/uncertainties regarding the method and their modelization. I am just providing here a few minor comments/questions that the authors may consider. (1) The overall time course of the experiment should be clarified. What is the time window of the recordings after the AAV injection? Is there a potential long-term impact of the GCamp6 f/s on the RGCs? How stable is its expression? (2) Did the author notice differences between retinas transduced with different calcium indicators (GCamp6f vs GCamp6s) or vectors? (3) Time of the day, the overall length of the sessions as well as previous light history should be reported. (4) Line 221, the FWHM of the Thorlabs LED could be mentioned. (5) Which drug is used for pupil dilation? (6) As mentioned, technical limitations of in vivo functional imaging are duly mentioned and discussed (along with the advantages of this method) in different sections of the manuscript (for example L170 in the methods or line 535 in the results). A suggestion would be to consolidate these remarks into a discussion paragraph comparing this relatively recent method to more classical electrophysiology techniques. (7) Line 985, the abbreviation PSF does not seem to be defined. (8) L1055 the conflicts of interest appear to be displaced in the references section. (9) Figure 5, is “green points (squares), 640 blue points (triangles), and red points (circles)” the right temporal order? Did the authors notice any trend over the 3 weeks? (10) Figure 7 e and f, there is no legend on the y-axis. (11) Figure 9, the center/surround caption is very hard to read. Reviewer #2: In this manuscript, Godat and colleagues recorded visual responses of retinal ganglion cells in the central fovea of living primates using calcium imaging. Recordings from these regions of highest acuity have been challenging in in-vitro studies due to the difficulties in preserving the fovea during retinal extraction and the displacement of retinal ganglion cells and their input photoreceptors. The authors confirm that previously described properties of more peripheral midget and parasol ganglion cells are conserved in the fovea. Furthermore, they provide a model to describe how retinal ganglion cells sample from the underlying cone photoreceptor mosaic. They use this model to demonstrate that their recordings are consistent with the hypothesis that midget ganglion cells in the central fovea sample from one or few cones to preserve the resolution of the underlying photoreceptor mosaic. Our knowledge on foveal retinal processing is limited to anatomical analyses, and parafoveal and LGN measurements. This manuscript hence provides an interesting new data set and confirms hypotheses derived from previous studies. In particular, the model of cone mosaic and retinal ganglion cell responses allowed the authors to determine whether foveal retinal ganglion cells preserve the resolution of the underlying photoreceptor mosaic. For publication, three main points should be addressed: (1) The manuscript is difficult to understand for readers who are not experts in optics. It would profit from illustrations of the experimental setup. (2) The manuscript lacks figures showing raw data. (3) A concluding paragraph is missing. Major comments: (1) Provide visual help to understand methodology: Large parts of the manuscript are, understandably, very technical and only comprehensible to experts in optics. However, schematics illustrating the overall setup and the most important issues and corrections, together with clear conceptual explanations of the setup/measurements/analysis would make this manuscript much more accessible to a broader readership. (2) Lack of raw data: The manuscript contains only one trace of raw data (Figure 2a). It is very difficult for the reader to judge the quality of the data, the repeatability of responses across trials and sessions, and to compare it to previously published in-vitro and LGN data. One of the apparent advantages of the here used technique is that the same cells can be imaged across multiple days. However, little data and no metrics are presented to illustrate how consistent these responses are. The authors should provide more raw traces that illustrate the different cell types, subjects, and repeated measurements, also for the color stimuli; and it would be interesting to see some metrics on the within- and between-session consistency of the responses (e.g. of the average curves shown in Fig. 5). (3) Concluding paragraph: Currently, confirmation of previous findings and novel or unexpected findings are distributed across various paragraphs. A concluding paragraph highlighting which hypotheses/findings from LGN recordings and anatomical studies were confirmed, and which novel aspects were found, would make the manuscript easier to understand. Minor comments: Technical information for primate researchers: Given that only very few primates can be used for invasive studies, all information that allows optimizing future studies is highly valuable. Therefore, it would be of service to the community if the authors could add a paragraph on the different conditions used in M1, M2 and M3. For instance, only M2 and M3 received cyclosporin A treatment; was it not necessary in M1 due to the different vector used to express GCaMP? How did the efficiency of transmission compare between 7m8-SNCG-GCaMP6f and AAV2-CAG-GCaMP6s? Was there a difference between the signal of the fast and slow GCaMP in the context of the described image acquisition? Line 160: Can the authors clarify what the Watt measurements refer to? Is this the amount of light across the whole pupil? Line 163: Please spell out the referenced maximum permissible exposure value. Line 358: What is the assumption of 199 um/deg based on? Line 1055: correct reference Figure 5: The plots appear to be cut. Some dots below 0 df/f are not visible (e.g. L1) and probably also some error bars are cut (e.g. M2). Figure 7e: typo in “single” Figure 9a: Cell M4 has very variable responses across repetitions (Figure 5) and the here used average tuning curve is hence not very informative. Another example cell would be more suited to demonstrate the effects of the optics. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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In vivo chromatic and spatial tuning of foveolar retinal ganglion cells in Macaca fascicularis PONE-D-22-17429R1 Dear Dr. Godat, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Manuel Spitschan Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: I Don't Know ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors have answered all my questions and requests for clarification. The manuscript is now ready for publication. Reviewer #2: I would like to thank the authors for providing the additional raw data representations, analysis, and technical details. All my comments have been addressed and the manuscript has gained in clarity and readability for a broader readership. I fully support publication of the revised manuscript and am sure the retina field will appreciate this very difficult to obtain set of data and analysis. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** |
| Formally Accepted |
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PONE-D-22-17429R1 In vivo chromatic and spatial tuning of foveolar retinal ganglion cells in Macaca fascicularis Dear Dr. Godat: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Manuel Spitschan Academic Editor PLOS ONE |
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