Peer Review History

Original SubmissionSeptember 20, 2022
Decision Letter - Gulali Aktas, Editor

PONE-D-22-26070Risk factors for mechanical ventilation and ECMO in COVID-19 patients admitted to ICU: A multi-center retrospective observation studyPLOS ONE

Dear Dr. Takazawa,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

==============================

ACADEMIC EDITOR: Manuscript ID PONE-D-22-26070 entitled "Risk factors for mechanical ventilation and ECMO in COVID-19 patients admitted to ICU: A multi-center retrospective observation study" which you submitted to the PLOS ONE, has been reviewed. A minor revision decision is applied to your manuscript according to the reviewer comments.

==============================

Please submit your revised manuscript by 11th of November, 2022. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.
  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.
  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Gulali Aktas

Academic Editor

PLOS ONE

Journal requirements:

When submitting your revision, we need you to address these additional requirements.

1.  Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at

https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf  and

https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

2. Please provide additional details regarding participant consent. In the ethics statement in the Methods and online submission information, please ensure that you have specified what type you obtained (for instance, written or verbal, and if verbal, how it was documented and witnessed). If your study included minors, state whether you obtained consent from parents or guardians. If the need for consent was waived by the ethics committee, please include this information.

3. In your Data Availability statement, you have not specified where the minimal data set underlying the results described in your manuscript can be found. PLOS defines a study's minimal data set as the underlying data used to reach the conclusions drawn in the manuscript and any additional data required to replicate the reported study findings in their entirety. All PLOS journals require that the minimal data set be made fully available. For more information about our data policy, please see http://journals.plos.org/plosone/s/data-availability.

Upon re-submitting your revised manuscript, please upload your study’s minimal underlying data set as either Supporting Information files or to a stable, public repository and include the relevant URLs, DOIs, or accession numbers within your revised cover letter. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. Any potentially identifying patient information must be fully anonymized.

Important: If there are ethical or legal restrictions to sharing your data publicly, please explain these restrictions in detail. Please see our guidelines for more information on what we consider unacceptable restrictions to publicly sharing data: http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. Note that it is not acceptable for the authors to be the sole named individuals responsible for ensuring data access.

We will update your Data Availability statement to reflect the information you provide in your cover letter.

4. Please amend either the title on the online submission form (via Edit Submission) or the title in the manuscript so that they are identical.

5. Your ethics statement should only appear in the Methods section of your manuscript. If your ethics statement is written in any section besides the Methods, please delete it from any other section.

6. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

Additional Editor Comments :

Dear Dr. Takazawa

Manuscript ID PONE-D-22-26070 entitled "Risk factors for mechanical ventilation and ECMO in COVID-19 patients admitted to ICU: A multi-center retrospective observation study" which you submitted to the PLOS ONE, has been reviewed. The comments of the reviewer(s) are included at the bottom of this letter.

The reviewer(s) have suggest some minor revisions to your manuscript. Therefore, I invite you to respond to the reviewer(s)' comments and revise your manuscript.

Comments of Reviewer 1

Manuscript is a clear, concise, and well-written with relevant introduction. Conclusion in abstract should be written more clearly and precisely. In Methodology explain terms PACHE II score, SOFA score, and how did you calculate them.

Some values in Table 1 and others are express as numbers and percentages, please write n(%) for that variables. If it is possible, please divide Table 2 and Table 3 into two or more tables.

Comments of Reviewer 2

The manuscript PONE-D-22-26070 is a well prepared original article about risk factors of intensive care either with ECMO or mechanical ventilation in Covid-19 patients. I congratulate authors for such a good work. My comments about the sections of the manuscript are as following:

Title is relevant as keywords after abstract which is an adequate summary of the study.

Rationale and aims are clearly mentioned in introduction

Methods and the study design expressed perfectly. Statistical analyses are correct and adequate for the study design.

Presentation of the results is clear. Tables improved the readiness. However, unit of all variables must be stated in the tables. I advise n,% for categorical variables.

Discussion is fair enough. Yet, I suggest discussing the role of inflammatory burden on necessity of ECMO or mechanical ventilation. Studies in literature reported higher inflammatory markers in serious Covid-19 cases compared to the patients with mild or moderate disease (Hematology 2021;26(1):529-542. DOI: 10.1080/16078454.2021.1950898). Discuss.

Conclusions must be clarified. The statement 'This study revealed several risk factors on ICU admission that are related to the 261 need for subsequent MV or ECMO in COVID-19 patients admitted to the ICU.' is not the best conclusion that could be drawn from the study.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Manuscript is a clear, concise, and well-written with relevant introduction. Conclusion in abstract should be written more clearly and precisely. In Methodology explain terms PACHE II score, SOFA score, and how did you calculate them.

Some values in Table 1 and others are express as numbers and percentages, please write n(%) for that variables. If it is possible, please divide Table 2 and Table 3 into two or more tables.

Reviewer #2: The manuscript PONE-D-22-26070 is a well prepared original article about risk factors of intensive care either with ECMO or mechanical ventilation in Covid-19 patients. I congratulate authors for such a good work. My comments about the sections of the manuscript are as following:

Title is relevant as keywords after abstract which is an adequate summary of the study.

Rationale and aims are clearly mentioned in introduction

Methods and the study design expressed perfectly. Statistical analyses are correct and adequate for the study design.

Presentation of the results is clear. Tables improved the readiness. However, unit of all variables must be stated in the tables. I advise n,% for categorical variables.

Discussion is fair enough. Yet, I suggest discussing the role of inflammatory burden on necessity of ECMO or mechanical ventilation. Studies in literature reported higher inflammatory markers in serious Covid-19 cases compared to the patients with mild or moderate disease (Hematology 2021;26(1):529-542. DOI: 10.1080/16078454.2021.1950898). Discuss.

Conclusions must be clarified. The statement 'This study revealed several risk factors on ICU admission that are related to the 261 need for subsequent MV or ECMO in COVID-19 patients admitted to the ICU.' is not the best conclusion that could be drawn from the study.

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: Yes: Ozge Kurtkulagi

**********

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Revision 1

Comments of Reviewer 1

Manuscript is a clear, concise, and well-written with relevant introduction.

Conclusion in abstract should be written more clearly and precisely.

Reply: We have modified the conclusion in the abstract according to your suggestion.

In Methodology explain terms APACHE II score, SOFA score, and how did you calculate them.

Reply: We have added a description of APACHE II and SOFA scores in the Methods section Further, we have cited references for where more information on these scores can be obtained.

Some values in Table 1 and others are express as numbers and percentages, please write n(%) for that variables.

Reply: We have changed the display of the variables in Table 1, as recommended.

If it is possible, please divide Table 2 and Table 3 into two or more tables.

Reply: Tables 2 and 3 are certainly large, but we would like to present the findings at a glance. Hence, we would prefer to retain the table in its current form, if there are no space constraints according to the journal requirements.

Comments of Reviewer 2

The manuscript PONE-D-22-26070 is a well prepared original article about risk factors of intensive care either with ECMO or mechanical ventilation in Covid-19 patients. I congratulate authors for such a good work. My comments about the sections of the manuscript are as following:

Title is relevant as keywords after abstract which is an adequate summary of the study.

Rationale and aims are clearly mentioned in introduction

Methods and the study design expressed perfectly. Statistical analyses are correct and adequate for the study design.

Presentation of the results is clear. Tables improved the readiness. However, unit of all variables must be stated in the tables. I advise n,% for categorical variables.

Reply: We have mentioned the units of the variables in Table 1, as recommended.

Discussion is fair enough. Yet, I suggest discussing the role of inflammatory burden on necessity of ECMO or mechanical ventilation. Studies in literature reported higher inflammatory markers in serious Covid-19 cases compared to the patients with mild or moderate disease (Hematology 2021;26(1):529-542. DOI: 10.1080/16078454.2021.1950898).

Reply: Thank you for presenting this important article. The article emphasizes a decrease in lymphocytes as an indicator of COVID-19 severity, especially when compared to neutrophils and platelets. We have cited this article as Reference 9.

Conclusions must be clarified. The statement 'This study revealed several risk factors on ICU admission that are related to the 261 need for subsequent MV or ECMO in COVID-19 patients admitted to the ICU.' is not the best conclusion that could be drawn from the study.

Reply: We have modified the conclusion according to your suggestion.

Journal requirements:

When submitting your revision, we need you to address these additional requirements.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at

https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

Reply: We have made revisions to ensure that the manuscript matches the style of PLOS ONE.

2. Please provide additional details regarding participant consent. In the ethics statement in the Methods and online submission information, please ensure that you have specified what type you obtained (for instance, written or verbal, and if verbal, how it was documented and witnessed). If your study included minors, state whether you obtained consent from parents or guardians. If the need for consent was waived by the ethics committee, please include this information.

Reply: We have added the following sentence as additional details regarding participant consent: Since the ethics committees of the participating institutions waived the need for obtaining verbal or written consent from the patients participating in this study, patient informed consent was obtained in the form of the option to opt-out on the institutions’ websites.

The current study did not include minors.

3. In your Data Availability statement, you have not specified where the minimal data set underlying the results described in your manuscript can be found. PLOS defines a study's minimal data set as the underlying data used to reach the conclusions drawn in the manuscript and any additional data required to replicate the reported study findings in their entirety. All PLOS journals require that the minimal data set be made fully available. For more information about our data policy, please see http://journals.plos.org/plosone/s/data-availability.

Upon re-submitting your revised manuscript, please upload your study’s minimal underlying data set as either Supporting Information files or to a stable, public repository and include the relevant URLs, DOIs, or accession numbers within your revised cover letter. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. Any potentially identifying patient information must be fully anonymized.

Important: If there are ethical or legal restrictions to sharing your data publicly, please explain these restrictions in detail. Please see our guidelines for more information on what we consider unacceptable restrictions to publicly sharing data: http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. Note that it is not acceptable for the authors to be the sole named individuals responsible for ensuring data access.

We will update your Data Availability statement to reflect the information you provide in your cover letter.

Reply: In this revision, we provide the minimal underlying dataset of the study as Supplementary Table S2. The table contains anonymized patient data.

4. Please amend either the title on the online submission form (via Edit Submission) or the title in the manuscript so that they are identical.

Reply: We confirmed that the title on the online submission form (via Edit Submission) and the title in the manuscript are identical.

5. Your ethics statement should only appear in the Methods section of your manuscript. If your ethics statement is written in any section besides the Methods, please delete it from any other section.

Reply: We have removed the ethics statement apart from that in the methods section.

6. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

Reply: We have confirmed that the reference list is complete and correct. The references we have cited do not include retracted articles.

Attachments
Attachment
Submitted filename: Response to Reviewers 101922ver2.docx
Decision Letter - Gulali Aktas, Editor

Risk factors for mechanical ventilation and ECMO in COVID-19 patients admitted to the ICU: A multicenter retrospective observational study

PONE-D-22-26070R1

Dear Dr. Takazawa,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Gulali Aktas

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Authors were very responsive to the reviewers' comments. The manuscript is improved significantly. Therefore it is acceptable for publication.

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: (No Response)

Reviewer #2: All review suggestions were followed b y the authors. Well done. There is nothing more that require further revision. I recommend publication.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: No

**********

Formally Accepted
Acceptance Letter - Gulali Aktas, Editor

PONE-D-22-26070R1

Risk factors for mechanical ventilation and ECMO in COVID-19 patients admitted to the ICU: A multicenter retrospective observational study

Dear Dr. Takazawa:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Professor Gulali Aktas

Academic Editor

PLOS ONE

Open letter on the publication of peer review reports

PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.

We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.

Learn more at ASAPbio .