Peer Review History
| Original SubmissionJune 21, 2021 |
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PONE-D-21-19718 SARS due to COVID-19: predictors of death and profile of patients in the state of Rio de Janeiro, 2020 PLOS ONE Dear Dr. Eleuterio, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Sep 18 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Kind regards, Giordano Madeddu Academic Editor PLOS ONE Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. You indicated that ethical approval was not necessary for your study. We understand that the framework for ethical oversight requirements for studies of this type may differ depending on the setting and we would appreciate some further clarification regarding your research. Could you please provide further details on why your study is exempt from the need for approval and confirmation from your institutional review board or research ethics committee (e.g., in the form of a letter or email correspondence) that ethics review was not necessary for this study? Please include a copy of the correspondence as an "Other" file. In addition, please ensure it is clear in your ethics statement that the Research Ethics Committee of the University Hospital Clementino Fraga Filho specifically granted an exemption, rather than an approval. 3. Thank you for stating the following in the Funding Section of your manuscript: “This study was funded by the Carlos Chagas Filho Foundation for Research Support of the State of Rio de Janeiro - FAPERJ. Process E_18/2015TXB: AÇÃO EMERGENCIAL COVID-19 - Chamada A - Apoio a Rede de Pesquisa em Vírus Emergentes e Reemergentes. Rio de Janeiro, RJ, Brazil. The National Council for Scientific and Technological Development (CNPq) and the Federal University of Rio de Janeiro (UFRJ) are responsible for granting the Scientific Initiation scholarship to co-author Marcella Cini Oliveira, through the Institutional Program for Scientific Initiation Scholarships (PIBIC). The National Council for Scientific and Technological Development (CNPq) and Department of Training and Support for the Formation of Human Resources (DCARH) of the State University of Rio de Janeiro (UERJ) are responsible for granting the Scientific Initiation Scholarship by the Institutional Program of Scientific Initiation Scholarships (PIBIC) to the co-author Mariana dos Santos Velasco.” We note that you have provided funding information that is currently declared in your Funding Statement. However, funding information should not appear in the Funding section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: “This study was funded by the Carlos Chagas Filho Foundation for Research Support of the State of Rio de Janeiro (http://www.faperj.br/) FAPERJ. Process E_18/2015TXB: AÇÃO EMERGENCIAL COVID-19 - Chamada A - Apoio a Rede de Pesquisa em Vírus Emergentes e Reemergentes. Rio de Janeiro, RJ, Brazil. The National Council for Scientific and Technological Development (CNPq) (https://www.gov.br/cnpq/pt-br) and the Federal University of Rio de Janeiro (UFRJ) are responsible for granting the Scientific Initiation scholarship to co-author MCO, through the Institutional Program for Scientific Initiation Scholarships (PIBIC). The National Council for Scientific and Technological Development (CNPq) (https://www.gov.br/cnpq/pt-br) and the Department of Training and Support for the Formation of Human Resources (DCARH) of the State University of Rio de Janeiro (UERJ) are responsible for granting the Scientific Initiation Scholarship by the Institutional Program of Scientific Initiation Scholarships (PIBIC) to the co-author MSV. The funders did not play any role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript” Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 4. Your ethics statement should only appear in the Methods section of your manuscript. If your ethics statement is written in any section besides the Methods, please delete it from any other section. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Title: SARS due to COVID-19: predictors of death and profile of patients in the state of Rio de Janeiro, 2020. Manuscript #: PONE-D-21-19718. The contribution of this article is the identification of independent risk factors for death among COVID-19 cases in a population of the state of Rio de Janeiro in Brazil. The authors captured measures for this study and classified the variables into four domains: Demographic, clinical, epidemiological, and health care. Before going into my comments, I am going to describe how this analysis should have been carried out using the non-parametric modeling: The primary aim of this study, per the authors, are (i) to describe the clinical and epidemiological profile of patients with SARS in the state of Rio de Janeiro, (ii) determine the predictors of death due to COVID-19-related SARS, and (iii) identify whether mortality patterns vary according to sociodemographic, clinical-epidemiological, and health care variables. It is clearly defined the population for the study is for all COVID-19 cases. The logistic regression modeling should be focused on finding the independent factors associated with each domain and combine all the domains in the final model to see what are predictors of the outcome among the COVID-19 cases. More importantly, the study includes age less than 18 years, which will bias study estimates, for example, comparing 0-9 years versus greater than 80 years of age. Several research publications were out on those cohorts as the pandemic evolved and did more research on hospitalized adult patients with COVID-19. Including patients, less than 18 years in this study is not a correct approach. As reported by the authors in Table 3, only 2% of the cases are among them. I do not know what proportion of death among those two percent in the less than 18 years of age. Comments: 1. Focus on COVID-19 cases. Including non-COVID-19 patients data divert the attention of the reader. Therefore, there is no need to include non-COVID-19 patients. 2. There should be a clear flow of data for an analyzable sample (Figure 1). 3. Exclude all data with less than 18 years of age. 4. The authors should follow the classification age per CDC standard; It should be age 18-49, 50-64, 65-74, and greater than or equal to 75 years. 5. Table 1 should be a distribution of all analyzable subjects among the measures in those four domains. 6. Table 2 should be odds ratios, 95% CI, and the associated probability value within each domain- report only the significant variables within each domain. 7. Table 3 should combine all the domain measures, use a step-wise logistic regression method to identify the independent factors associated with the outcome. Report the significant measures odds ratio, 95% CI, and its probability value. 8. Use the Table 3 odds ratio and its 95% CI to create a graphical representation as Figure 2. Minor comments: 1. The current variables listed in table 1 be moved to the methods section, not as a table. 2. All the other Tables 2,3 and 4 are to be removed and modified as mentioned above in the comments. 3. Availability of data and the ethical aspects section should be moved to the methods section. 4. All the tables and figures should be moved to the end of the manuscript and provide clear marking in the text where the text and figures should go. 5. The authors should mention the c-statistic of the individual domain model and the overall step-wise all domain model in the statistical methods section. 6. The details of AIC, VIF, and ROC are unnecessary and should be deleted in the statistical methods section. Also, it is not essential to know those values in the results or discussion section. A complete overhaul of analysis is needed to make it a tremendous COVID-19 research report from this retrospective data from Brazil. Reviewer #2: Title: SARS due to COVID-19: predictors of death and profile of patients in the state of Rio de Janeiro, 2020 Manuscript number======PONE-D-21-19718 Review by Mastewal Arefaynie /Assistant professor in public health) Wollo University Dessie, Ethiopia General comment There are several topological and grammar usage errors that need extensive proof reading for revisions. Specific comments Abstract 1. In the introduction part you state simply the objective of the study. But it needs the justification of the research (the identified gap). 2. Material and method part it is enough to say method. So remove material. Try to include the software you used for analysis and the type logistic regression you were used. 3. Result: are you using all SARS case or COVID-19 patients only? Try to focus only on the latter case. 4. Line “32” comorbidity was risk factor for death. But you state comorbidity like kidney disease in line “32-34”. But preferred to use each commodity factor by removing there commorbidity effect. 5. Immunodepression change to immunosuppression 6. The conclusion part Line “36” by using odds ratio, you try to conclude to factors. But it is advisable to include more predictors with direction. Introduction Generally it is good. But need some justification. 7. The justification to do the research is not well described for scholars. Methods 8. Change “Materials and Methods” to “methods” 9. “Line 82”, immediate notification of SARS cases was. Change cases to case or was to were. 10. “Line 86” during your description of the outcome variable, you say none death for hospitalization, and hospitalization in an intensive care unit patients. Why not declare their outcome? Unless miss-classification may be there. Your dependent variable should be cure and death. 11. You are using general linear logistic regression. But your outcome variable is dichotomous so binary logistic regression is appropriate. Also your result is expressed in OR. Result Unless you were doing comparative study among COVID-19 SARS and SARS, write the result only for you interest. Or compare them. Discussion Needs justification for factors Wish you the luckiest! Mastewal Arefaynie. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. 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| Revision 1 |
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SARS due to COVID-19: predictors of death and profile of adult patients in the state of Rio de Janeiro, 2020 PONE-D-21-19718R1 Dear Dr. Rodrigues de Araujo Eleuterio, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Paavani Atluri Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #3: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #3: The present work aimed to analyze and describe predictors of death from severe acute respiratory syndrome (SARS) due to COVID-19 in Rio de Janeiro, Brazil, trought the System for Epidemiological Surveillance of Influenza and the Mortality Information. In general, the authors concluded that male sex, old age, oxygen saturation <95%, respiratory distress, dyspnoea, chronic kidney and neurological diseases, immunosuppression, and use of invasive or noninvasive ventilatory support were related to death. As detailed in the file attached, the authors respond all the request made from previous reviewers. That being said, and, due to the importance of manuscript regarding the issue raised, I reccomend the manuscrip for publication in PLOS ONE. Best, ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #3: Yes: Raiane Cardoso Chamon ********** |
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