Peer Review History

Original SubmissionApril 26, 2022
Decision Letter - Shao-Jun Tang, Editor

PONE-D-22-11884Cutaneous expression of Growth-Associated Protein 43 is not a compelling marker for human nerve regeneration after chronic focal nerve injuryPLOS ONE

Dear Dr. Schmid,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised by the reviewers.

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We look forward to receiving your revised manuscript.

Kind regards,

Shao-Jun Tang

Academic Editor

PLOS ONE

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2. Thank you for stating the following financial disclosure: 

"ABS is supported by a Wellcome Trust Clinical Career Development Fellowship (222101/Z/20/Z) and the National Institute for Health Research (NIHR) Oxford Biomedical Research Centre (BRC). The views expressed are those of the authors and not necessarily those of the NHS, the NIHR or the Department of Health. The Oxford carpal tunnel cohort was supported by an advanced postdoc mobility fellowship from the Swiss National Science Foundation (P00P3-158835 to ABS) and an early career research grant from the International Association for the Study of Pain (to ABS). GB is supported by Diabetes UK (19/0005984). This research was funded in whole, or in part, by the Wellcome Trust [222101/Z/20/Z]. For the purpose of Open Access, the author has applied a CC BY public copyright license to any Author Accepted Manuscript version arising from this submission."

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

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2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

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3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

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4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

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5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Manuscript number: PONE-D-22-11884

Title: Cutaneous expression of Growth-Associated Protein 43 is not a compelling marker for human nerve regeneration after chronic focal nerve injury.

Overview and general recommendation:

GAP43 is a well-known marker for neuronal development/growth in embryo and regeneration after neuronal injury in adult rodent animal. Capral tunnel syndrome (CTS) is a typical model both for human sensory nerve degeneration due to nerve compression and regeneration after surgery decompression. The strength of the paper is that Carrol et al choose the optimized model to investigate the difference of GAP43+ immune-positive cutaneous nerve fibers before and after surgery and whether GAP43 expression is related to after surgery regeneration; The authors provided the meaningful and realistic results of GAP43+ fiber regeneration in chronic nerve injury of CTS in patients. This article is acceptable for publication after the. following points are addressed.

The major concerns:

Title: As this study only investigates the carpal tunnel syndrome patient’s index finger skin sample with average symptom duration 37.6 months, which belongs to chronic neuronal injury, it should be cautioned to expand the conclusion to all chronic focal nerve injury which may involve different mechanisms. I suggest that the title should be specified to carpal tunnel syndrome only.

The GAP43 immunofluorescence staining image: The study measures and expresses the GAP43+ fiber in a reasonable scientific way (Fig 1 and 2) with matched statistics calculation. I strongly suggest the authors provide data from PGP9.5 and GAP43 staining to show the audience that both fibers are effectively detected.

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Reviewer #1: No

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Attachments
Attachment
Submitted filename: 05.14.22 Plos one review .docx
Revision 1

Point by point reply

1. Title: As this study only investigates the carpal tunnel syndrome patient’s index finger skin sample with average symptom duration 37.6 months, which belongs to chronic neuronal injury, it should be cautioned to expand the conclusion to all chronic focal nerve injury which may involve different mechanisms. I suggest that the title should be specified to carpal tunnel syndrome only.

We have now changed out title as suggested to read: “Cutaneous expression of Growth-Associated Protein 43 is not a compelling marker for human nerve regeneration in carpal tunnel syndrome”

2. The GAP43 immunofluorescence staining image: The study measures and expresses the GAP43+ fiber in a reasonable scientific way (Fig 1 and 2) with matched statistics calculation. I strongly suggest the authors provide data from PGP9.5 and GAP43 staining to show the audience that both fibers are effectively detected.

We agree that the inclusion of staining images is helpful to assure the readers of the quality of our staining. We have now added a new Figure 2 including confocal immunohistochemistry images demonstrating staining of GAP-43 and PGP in skin sections.

Editorial items

When submitting your revision, we need you to address these additional requirements.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at

https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and

https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

We have layouted our article according to the guidelines.

2. Please state what role the funders took in the study. If the funders had no role, please state: ""The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.""

If this statement is not correct you must amend it as needed.

Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf.

We have provided the updated funding statement in the cover letter.

3. We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For more information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions.

We have updated the data availability statement and now provide both RNAseq and phenotypic/staining data in open access (see cover letter and manuscript).

4. Please amend either the abstract on the online submission form (via Edit Submission) or the abstract in the manuscript so that they are identical.

We have adjusted the abstract in the manuscript.

5. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information.

We have adjusted our supporting information files and citations in accordance with PLOSone guidelines.

Decision Letter - Michal Hetman, Editor

PONE-D-22-11884R1Cutaneous expression of Growth-Associated Protein 43 is not a compelling marker for human nerve regeneration in carpal tunnel syndromePLOS ONE

Dear Dr. Schmid,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. I agree with the reviewer that adding more images to Fig. 2 would be beneficial (especially those that show nerve terminals). 

Please submit your revised manuscript in 45 days after this decision letter. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.
  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.
  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Michal Hetman

Academic Editor

PLOS ONE

Journal Requirements:

Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

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2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Partly

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3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

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5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: 08.15.22 Resubmission review

1. Title. I really appreciate that the author changed the title to make it specific to carpal tunnel syndrome.

2. The GAP43 immunofluorescence staining image needs minor revise. In figure 2, the PGP9.5 staining appears correct, however the GAP43 staining presents minor problem. Most of the GAP43 Cy3 color overlaps with PGP9.5 (AlexaFluor-488) and fails to show the difference between the two nociceptors. Consideration It is true that most GAP43+ fibers are usually positive for PGP9.5, even they might be different nociceptors, derived from different types of DRG neuron, thus they should have their own unique morphology. The overlapped immunofluorescence staining is a weakness of this image. Another weakness of this figure is the nerve bundle traveling inside the dermis is well presented, however, the axon terminals located inside the epidermis which is the most important part to distinguish the different type of nociceptor are not well stained. Therefore, it is difficult to discern the two types of nociceptors. Overall, considering the weakness of figure 2, I would suggest the author provide additional PGP9.5 and GAP43 double staining image with the emphasis on the fiber located within epidermis as a minor revise.

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7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

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[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Attachments
Attachment
Submitted filename: 08.15.22 2nd review final 2.docx
Revision 2

Reviewer 1: The GAP43 immunofluorescence staining image needs minor revise. In figure 2, the PGP9.5 staining appears correct, however the GAP43 staining presents minor problem. Most of the GAP43 Cy3 color overlaps with PGP9.5 (AlexaFluor-488) and fails to show the difference between the two nociceptors. It is true that most GAP43+ fibers are usually positive for PGP9.5, even they might be different nociceptors, derived from different

types of DRG neuron, thus they should have their own unique morphology. The overlapped immunofluorescence staining is a weakness of this image.

Another weakness of this figure is the nerve bundle traveling inside the dermis is well presented, however, the axon terminals located inside the epidermis which is the most important part to distinguish the different type of nociceptor are not well stained. Therefore, it is difficult to discern the two types of nociceptors. Overall, considering the weakness of figure 2, I would suggest the author provide additional PGP9.5 and GAP43 double staining image with the emphasis on the fiber located within epidermis as a minor revise.

Response: We would like to thank the reviewer for this comment. We have now taken new images of the double staining of PGP and GAP-43 and revised our figure accordingly.

However, we are somewhat puzzled by the comment. PGP9.5 stains all nerve fibres, it is a pan-axonal stain. There are therefore no nerve fibres that are GAP-43 positive but PGP9.5 negative. As such GAP-43 does not stain a different subset of nociceptors than PGP9.5 would, but rather GAP-43+ neurons are a subset within PGP+ nerve fibres. We agree though that in the image we provided, most PGP+ fibres were also GAP-43 positive. That is because we selectively chose a section of a patient with overlap to show the staining quality.

We have now revised our figure to include a representative image which shows some PGP+ intraepidermal nerve fibres with and some without GAP-43 labelling. We have highlighted these with arrows and arrow heads respectively.

We have now also delineated the dermal/epidermal border to help the readers distinguish between dermal and intraepidermal nerve fibres, as in fact our previous image contained many intraepidermal nerve fibres. Please note that the morphology of finger skin is quite distinct (e.g., many papillary indentations) from the leg. This may have led to the misinterpretation of the images to only contain dermal fibres. We hope that these revisions and the new images will help showcase the quality of our staining as well as the double labelling better.

Attachments
Attachment
Submitted filename: Response to reviewers 2.docx
Decision Letter - Michal Hetman, Editor

Cutaneous expression of Growth-Associated Protein 43 is not a compelling marker for human nerve regeneration in carpal tunnel syndrome

PONE-D-22-11884R2

Dear Dr. Schmid,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

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Kind regards,

Michal Hetman

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Formally Accepted
Acceptance Letter - Michal Hetman, Editor

PONE-D-22-11884R2

Cutaneous expression of Growth-Associated Protein 43 is not a compelling marker for human nerve regeneration in carpal tunnel syndrome

Dear Dr. Schmid:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Michal Hetman

Academic Editor

PLOS ONE

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