Peer Review History
| Original SubmissionMay 3, 2022 |
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PONE-D-22-12668Prognostic variables and 4-year survival outcomes in CD20 Positive AIDS Related Lymphoma in the Anti-retroviral treatment era: A Retrospective Review from a Single Centre in KwaZulu-Natal, South AfricaPLOS ONE Dear Dr Rapiti Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by 30th July 2022. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Kind regards, Zivanai Cuthbert Chapanduka, MBChB (M.D) Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Thank you for the opportunity to review thi manuscript entitled "Prognostic variables and 4-year survival outcomes in CD20 Positive AIDS Related Lymphoma in the Anti-retroviral treatment era: A Retrospective Review from a Single Centre in KwaZulu-66 Natal, South Africa". This research is a well-designed retrospective study highlighting that established scoring systems for aggressive lymphomas are relevant in the context of AIDS related lymphomas. Additional findings were that a low viral load was associated with increased probability of CR and that male gender and 6 or more cycles of chemotherapy were associated with longer survival. Assessing predictors of lymphoma outcome within the context of an HIV endemic setting is important and will be of interest to the readership of PLOSOne. It is recommended that the manuscript be accepted for publication with revisions. The following is unclear and should be addressed: 1. Within the abstract, it states that “attaining a CR and male gender were significantly associate with improved 4-year OS and PFS”. The p-value for male gender is stated. It is not clear where the impact of attaining CR on 4-year OS and PFS is stated; a HR and p-value were not calculated for this variable within Table 3. 2. In Figure 1 a. On the left (CR), there are 56 patients that achieved CR1 with 11 of these lost to follow up after CR1 and 21 patients required salvage therapy (2 of these were patients that had achieved CR1 – from the text), leaving 27 of the 102 patients unaccounted for. The authors should add into the flow chart what happened to these 27 patients. Were they lost to follow up before CR1, did they demise before achieving CR1 or before salvage therapy could be offered, or refuse salvage? b. On the right (PFS), it should be added that 12 demised and 30 were lost to follow up, as per OS. Or the figure restructured to indicate that the demised/LTFU box is applicable to both OS and PFS. 3. Please elaborate within the method section as to why the cut-off values were chosen for analysis. Why was age <40 years chosen, if the IPI decision point is age <60? All of the other cut-offs are the same as the IPI. Why was CD4 count cut-off of 100 chosen for comparison? 4. In Table 1, the percentage of patients with CD4 count <100 and >100 are not stated, while percentages are stated for other categories. This should be remedied. 5. All data underlying the findings should be made available within the manuscript. The authors should consider adding percentages for each category in Table 2 to Table 4, as done for Table 1, as this information is not stated within the text. Additionally, data on which the interpretation were based may be incomplete. In all tables, it will be useful to add how many patients had available data for each variable. For example, we learn in the limitations that for VL only 65 patients had data. It will be valuable to know an n for all variables analysed, as this has impact on the calculated hazard ratios and p-values. 6. The manuscript should be carefully checked to make sure that all abbreviations are written out on first use. Reviewer #2: -I suggest a clear definition of CD20 positive AIDS-related lymphomas and why that terminology has been preferred to (CD20 positive) lymphomas associated with HIV infection (as per WHO classification of lymphomas). This is more so given the stated limitation that the diagnosis of AIDS was not confirmed in a sizeable population in this cohort of patients - In this study, what subtypes of CD20 ARLs were encountered and in which proportions? - I see that the only chemo regimens used were CHOP or R-CHOP. Were these given at standard doses and frequency or there were dose & frequency modifications? (If dose &/or frequency modifications were done, did that have any impact on PFS or OS?) And were these the regimens also used to treat Burkitt lymphoma and primary CNS lymphoma, if you had any in this patient cohort? And were the other known prognostic factors in Burkitt lymphoma such as CNS involvement or tumour diameter assessed? - Prognostic value of age >35 (rather than >40 years) is known to be poorer than <35 years for this patient population. What was the literature basis of using 40 years in this study rather than 35 years? - I've concerns about two important findings in this study that contradict literature in which larger numbers of patients were assessed: 1) Impact of adding rituximab to CHOP - no beneficial effect in this cohort 2) Impact of starting chemo in ART naive vs patients already on ART - no effect of OS Do you think this is the message you would want the paper to convey to the audience or you think this is artefactual due to small sample size? If the latter is true, don't you think it is better to get a more representative sample size before publishing this article? - Table 1: please put percentages for patients with CD4 counts below and above 100 - I would think it is important to put the total number of patients with ARL seen during the study period and then state how many were selected for the study, the selection criteria and why the rest were excluded - I notice that poor virological control had an impact on achieving CR. Why was that so, and what was the impact of confounders such as higher rates of neutropenia, delay in giving chemo as per protocol, compliance to chemo, opportunistic infections, etc? Were these confounding factors similar in those with HIV VL <50 and those with higher viral load and if not, did you test their prognostic impact independently? - Line 283: You mention IMPROVED 4-year survival: do you have pre-HAART era survival rates in similar patient cohort to compare with? This is more so important given that you didn't find survival benefit in those patients on ART versus those not on ART when given chemo - Line 349 may need to be relooked - I suggest that you include absolute numbers in your results section for the readers to get context of some of your discussion points. e.g., you seem to be recommending readers to utilise radiotherapy more, but it is not clear how many of your patients received it and for what indication or stage of disease, and at palliative or curative doses.. If the numbers are small, your seemingly positive vibe with radiotherapy may just have been by chance. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. 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| Revision 1 |
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Prognostic variables and 4-year survival outcomes in CD20 Positive AIDS Related Lymphoma in the Anti-retroviral treatment era: A Retrospective Review from a Single Centre in KwaZulu-Natal, South Africa PONE-D-22-12668R1 Dear Dr. Rapiti We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Zivanai Cuthbert Chapanduka, MBChB (M.D) Academic Editor PLOS ONE Additional Editor Comments (optional): Congratulations on the acceptance of your manuscript by both reviewers who expressed satisfaction with your responses. If you find anything that must be corrected, please point it out to the Academic Editor or other Editor as soon as possible. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? Reviewer #1: Yes Reviewer #2: (No Response) Academic editor opinion: Yes 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: (No Response) Academic editor opinion: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: (No Response) ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: (No Response) Academic editor opinion: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors have addressed and clarified all previous concerns. Line 211: "The data for 26 plasmablastic lymphoma patients has been published." Please supply the reference. Reviewer #2: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** |
| Formally Accepted |
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PONE-D-22-12668R1 Prognostic variables and 4-year survival outcomes in CD20 Positive AIDS-Related Lymphoma in the Anti-retroviral treatment era: A Retrospective Review from a Single Centre in KwaZulu-Natal, South Africa Dear Dr. Rapiti: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Zivanai Cuthbert Chapanduka Academic Editor PLOS ONE |
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