Peer Review History
| Original SubmissionAugust 19, 2021 |
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PONE-D-21-26846Evaluating interhemispheric connectivity during midline object recognition using EEGPLOS ONE Dear Dr. Thirugnanasambandam, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Mar 17 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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AD was funded by the Master’s research fellowship from DBT.” We note that you have provided funding information that is not currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: “The work was supported by NINDS intramural research program. NT was funded by Ruth L. Kirschtein NRSA award from NINDS (2013-2016) and DBT/WT India Alliance fellowship grant IA/CPHI/16/1/502624 (2017-present). AD was funded by the Master’s research fellowship from DBT. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. 4. We note that you have stated that you will provide repository information for your data at acceptance. Should your manuscript be accepted for publication, we will hold it until you provide the relevant accession numbers or DOIs necessary to access your data. If you wish to make changes to your Data Availability statement, please describe these changes in your cover letter and we will update your Data Availability statement to reflect the information you provide. Please include your amended statements within your cover letter; we will change the online submission form on your behalf. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Das and colleagues aimed to replicate the results of a previous EEG study (Mima et al., J. Neurosci., 2001), which showed that midline recognition of familiar, visual objects induces a transient interhemispheric coherence in the alpha-band; while such interhemispheric synchronization was absent during the presentation of meaningless objects or passive viewing. In the present study, Das et al. assessed interhemispheric coherence during midline object recognition using EEG, and they evaluated also the interhemispheric functional connectivity, after EEG source reconstruction. The Authors replicated the alpha desynchronization effect from the 2001 study, but not the interhemispheric coherence results. Nonetheless, they found modulations in the imaginary part of coherency and Granger causality estimates between left and right occipito-temporal regions. I agree that the use of more advanced methods and connectivity measures is interesting to investigate object recognition and it may help to provide novel insights into this neural mechanism, and the Authors should be applauded for pursuing this path. However, I have some major concerns that make the current work not suitable for publication in its current form. My concerns are listed below in order of occurrence. I hope that these points will help the Authors to improve their work and manuscript. <abstract> * It is unclear whether the imaginary coherency effects are also specific for the alpha-band. The Authors should explicitly mention that in the Abstract. <introduction> * The Authors use interchangeably the words “synchronization” and “synchronisation”. Please be consistent. In general, a final proofreading is needed to correct typos and make the grammar more consistent. * In the first paragraph, the Authors introduce the term “alpha rhythm” without specifying the frequency range. These details are important, especially for a broader, less expert readership. Also, the use of parentheses to report time windows is confusing. I suggest to avoid that, and instead report simply the extremes of each time interval using an en dash (e.g., “117–373 ms”). * Mima et al. employed familiar and unfamiliar/meaningless objects. I am not sure what “non-object stimuli” are. I recommend the Authors to clarify the design of the previous study and report its results using unambiguous terminology. This will also help the reader to understand the rationale and details of the current work. <materials and="" methods=""> * (minor) Figure 1. More or less 50% of this figure is occupied by the electrodes layout (1A), which does not really add any useful information and it is not central for the description of the procedure. More space should be given to the design of the experiment and the stimuli (1B-C). * The Authors mentioned that anatomical MRI images “were either MPRAGE or 3D-T1 images from a 3T scanner”. What does that mean? Did the Authors used different sequences for anatomical image acquisition across subjects? Furthermore, several technical details are missing. What parameters were used for data acquisition? What is the model and manufacturer of the scanner? * (minor) Sensor data analysis. I suggest to change the name of the subsection to “Sensor-space analyses”. * Sensor data analysis. For one subject in one session, one channel was rejected and interpolated. However, no motivation for doing that has been provided. Was the channel contaminated by excessive artifacts during the recording? If that is the case, how were these identified? Please motivate this choice. * (minor) Sensor data analysis. The Authors report mean and standard deviation across subjects of the number of trials used for the successive analyses. In addition to the SD, the range (minimum-maximum across subjects) may actually provide a more informative measure of the amount of trials surviving preprocessing. * Sensor data analysis. The Authors should specify the frequency range for the estimation of alpha-band coherence. This information is currently missing in the Methods section. * Using the imaginary part of coherency reduces the possible confounding effects of zero-lag interactions. However, when estimated in sensor-space, even this measure does not provide any meaningful interpretations in terms of underlying cortical sources, but it provides only an estimate of statistical dependencies between sensors (see Brunner et al., Front. Comput. Neurosci., 2016; Van de Steen et al., Brain Topogr., 2016). To avoid any confusion, the authors should clarify that. * Source localization. How was the noise covariance matrix estimated? Which time window have the Authors employed for estimation? * Source localization. The Authors mentioned that Granger causality estimates were derived to assess the interactions between left and right ROIs. It is unclear what variant of Granger causality was used: time-domain definition, Geweke’s frequency-domain definition, or else? References are also missing. Without these details, it is impossible to assess the quality of the methodological procedures. * Statistical analysis: Sensor space. It is unclear why the Authors restricted their analysis to the alpha-band. I understand the goal to replicate the previous findings, but thanks to modern computers and cluster-based permutation tests for statistical comparison (e.g., see Maris and Oostenveld, J. Neurosci. Methods, 2007), a full time-frequency analysis in sensor-space is called for. <results> * Figure 2. The font of axes and colorbar ticks’ labels should be increased. Units are missing for the labels of the x and y axis. Please use the letters A-B to distinguish between the left and right panel in the figure. I also recommend to center the scale of the colorbar around zero (i.e., no increase/decrease) to improve interpretability of the results. * Figure 3. In addition to describing the difference in bars’ texture between the two types of stimuli (solid black/checked) in the caption, please add a legend showing such difference. This information should be immediately clear from the figure. Furthermore, I suggest to rename the label of x-axis to “Preselected time windows” or something like that. * Figure 4. Same comments as for Figure 3 (see above). * Sensor-space coherence/iCoh results. Something unclear to me is the reason why the Authors decide to report and comment only the statistical comparison with respect to baseline if it is not the best at capturing the main results that they are trying to convey (i.e., differences between familiar and unfamiliar objects). The Authors did such comparison only for the power (see Figure 5). Unless the Authors have a specific reason to avoid that, I suggest adding to the statistical design the comparison familiar vs. unfamiliar/meaningless objects. This analysis could be done in the entire time-frequency space, by using the nonparametric cluster-based permutation approach (as I mentioned in a previous point). * Sensor-space results. Like for the other analyses, it is unclear why the Authors restricted the comparison in few time windows and one frequency band. Also, the Authors mention that “In order to get a more conservative and robust estimation of the coherence between the two regions, imaginary part of coherency was computed.” This sentence is misleading and should be rephrased. Coherence and iCoh measure essentially two different things. * Figure 8. Same comments as for Figure 3 (see above). * Granger causality results. Without specifying how Granger causality was estimated it is impossible to assess the reliability of the results shown. <discussion> * I agree that the advantage of using EEG source reconstruction is its high temporal resolution, combined with a reasonably acceptable localization of cortical sources of activity. However, the Authors did not take full advantage of this characteristics of the EEG signals, by restricting their analyses to four windows of interest. * What is the definition of “true functional connectivity” for the Authors? I suggest to expand on that. And, in general, I recommend to be a bit more cautious in drawing certain conclusions.</discussion></results></materials></introduction></abstract> ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Evaluating interhemispheric connectivity during midline object recognition using EEG PONE-D-21-26846R1 Dear Dr. Thirugnanasambandam, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Kiyoshi Nakahara, PhD Academic Editor PLOS ONE Additional Editor Comments (optional): I apologize for the delay in finalizing our decision; we received your revised manuscript on April 11 and asked the previous reviewer to review it, but have not received a reply. Therefore, I have reviewed the revised manuscript and have decided to accept for publication. |
| Formally Accepted |
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PONE-D-21-26846R1 Evaluating interhemispheric connectivity during midline object recognition using EEG Dear Dr. Thirugnanasambandam: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Kiyoshi Nakahara Academic Editor PLOS ONE |
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