Peer Review History
| Original SubmissionJune 8, 2022 |
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PONE-D-22-16566Wastewater surveillance in smaller college communities may aid future public health initiatives PLOS ONE Dear Dr. Newman, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please provide more detailed information on the methodology used and QA/QC protocols in your revised manuscript. Also please cite recent published papers on this topic. Please submit your revised manuscript by Sep 09 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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We will update your Data Availability statement to reflect the information you provide in your cover letter. 3. We note that you have stated that you will provide repository information for your data at acceptance. Should your manuscript be accepted for publication, we will hold it until you provide the relevant accession numbers or DOIs necessary to access your data. If you wish to make changes to your Data Availability statement, please describe these changes in your cover letter and we will update your Data Availability statement to reflect the information you provide. 4. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: N/A Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors of the manuscript PONE-D-22-16566 have conducted a nice study but there are some loopholes in the manuscript which needs to be fixed before accepted for publication. The points to be addressed are mentioned below; Please reframe the 1st sentence of the abstract. The part “since its declaration” doesn’t sound good. Maybe the sentence can be reframed to “Since the declaration of COVID-19 pandemic” or any other of your choice. In the introduction, please cite references where WBE has been imposed at school/ college/ university level. Few of the references are provided below; https://doi.org/10.1371/journal.pone.0270168 https://doi.org/10.1016/j.scitotenv.2021.146408 https://doi.org/10.1016/j.scitotenv.2021.146749 Please highlight the novelty of the study in the last paragraph of the introduction. Why was the ww sample from one WWTP heat inactivated but other one not? Was there any field blank, method blank, extraction blank? What about negative controls? What are the QA/QC measures taken into consideration? Was the LoD, LoQ determined? Was any RT-qPCR inhibition noticed? Incorporate statistical analysis. Critical scientific explanation for the obtained results are missing. Please provide better picture resolution of the figures and the fonts should be legible. Please incorporate references in support of the obtained results. The literatures provided below when cited would enhance the manuscript; https://doi.org/10.1371/journal.pone.0266407 https://doi.org/10.1128/aem.01740-21 https://doi.org/10.1016/j.scitotenv.2021.152503 https://doi.org/10.1016/j.scitotenv.2021.150264 https://doi.org/10.1371/journal.pwat.0000007 https://doi.org/10.1021/acsestwater.2c00052 Reviewer #2: This is a well-written report of SARS-CoV-2 wastewater monitoring conducted at three rural locations. The analysis is clearly reported and follows one conventional viral concentration procedure that has been commonly used despite its analytical challenges and drawbacks (e.g., <0.51% recovery of phi6 used as an indicator for SARS-CoV-2 in this paper: https://www.sciencedirect.com/science/article/pii/S0048969721058009 ) My primary concern is that the PEG precipitation method does not necessarily appear to generate concentrations that provide reliable detection or trend information. For example, the authors report low concentrations in the wastewater during the Omicron surge, lack of correlation with observed clinical case trends, and lag of wastewater data (rather than lead over clinical cases). Some of these observations could be explained by poor clinical testing or other environmental factors, but it’s also possible some of the observations result from analytical issues. The analysis appears to have been performed carefully and consistently, so I wonder how effective this particular method actually is at low concentrations (which may be most relevant in these communities). Generally, we’ve found the PEG precipitation method to perform poorly. The authors should provide more context in terms of the success (or not) of the PEG method applied in generating reliable results that can be used to capture trends in infection rates for similar contexts. If other studies have demonstrated the particular utility of this method, this would build confidence in the wastewater results reported. The normalization with PMMoV also does not appear to improve the correlations with clinical cases—is this consistent with what others have seen using this method in similar contexts? Were correlations between wastewater and clinical cases in this study better or worse with and without PMMoV normalization? I absolutely agree that rural areas and small communities can benefit from wastewater monitoring, but more sensitive and reliable methods may be needed to confidently report results (e.g., analysis of primary clarifier sludge is much more sensitive as an overall method for detection https://pubs.rsc.org/en/content/articlehtml/2022/ew/d1ew00826a ). If the wastewater measurements don’t consistently lead over clinical cases, the tool is not useful for early warning. Only analytical results (non-normalized) from WWTP plant (Figure 2C) appears to have consistent detection for N1 and N2 as well as trends that fit with expectations from the known surges in infections. Can the authors explain the poor agreement between N1 and N2 in Figure 2a? I recommend that the authors report the full suite of Minimum Information for Publication of Quantitative Real-Time PCR Experiments (MIQE) to improve the completeness of the reported results ( for further information, see Bivins et al, 2021 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8341816/ ). Especially given higher rates of non-detects, the limit of detection (LOD) in terms of genome copies / ul extract as well as genome copies/ ml wastewater sample. Standard curves are shown, but I don’t believe the LOD was reported. How non-detects were treated in triplicate qPCR analysis should also be reported (e.g., if 1 or more results of the triplicate were below the LOD, were the replicates assigned a value such as the LOD, were the results censored, or how else where they handled?). ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Wastewater surveillance in smaller college communities may aid future public health initiatives PONE-D-22-16566R1 Dear Dr. %Newman%, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Asli Aslan Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: N/A ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No ********** |
| Formally Accepted |
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PONE-D-22-16566R1 Wastewater surveillance in smaller college communities may aid future public health initiatives Dear Dr. Newman: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Asli Aslan Academic Editor PLOS ONE |
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