Peer Review History

Original SubmissionJanuary 27, 2022
Decision Letter - Luigi Lavorgna, Editor

PONE-D-21-40766Changes in physical activity, dietary and sleeping pattern among the general population in COVID-19 : A systematic review protocolPLOS ON

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please submit your revised manuscript by Mar 31 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.
  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.
  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Luigi Lavorgna

Academic Editor

PLOS ONE

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3. We note that this manuscript is a systematic review or meta-analysis; our author guidelines therefore require that you use PRISMA guidance to help improve reporting quality of this type of study. Please upload copies of the completed PRISMA checklist as Supporting Information with a file name “PRISMA checklist”.

4. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Does the manuscript provide a valid rationale for the proposed study, with clearly identified and justified research questions?

The research question outlined is expected to address a valid academic problem or topic and contribute to the base of knowledge in the field.

Reviewer #1: Yes

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2. Is the protocol technically sound and planned in a manner that will lead to a meaningful outcome and allow testing the stated hypotheses?

The manuscript should describe the methods in sufficient detail to prevent undisclosed flexibility in the experimental procedure or analysis pipeline, including sufficient outcome-neutral conditions (e.g. necessary controls, absence of floor or ceiling effects) to test the proposed hypotheses and a statistical power analysis where applicable. As there may be aspects of the methodology and analysis which can only be refined once the work is undertaken, authors should outline potential assumptions and explicitly describe what aspects of the proposed analyses, if any, are exploratory.

Reviewer #1: Partly

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3. Is the methodology feasible and described in sufficient detail to allow the work to be replicable?

Descriptions of methods and materials in the protocol should be reported in sufficient detail for another researcher to reproduce all experiments and analyses. The protocol should describe the appropriate controls, sample size calculations, and replication needed to ensure that the data are robust and reproducible.

Reviewer #1: Yes

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4. Have the authors described where all data underlying the findings will be made available when the study is complete?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception, at the time of publication. The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

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5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

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6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above and, if applicable, provide comments about issues authors must address before this protocol can be accepted for publication. You may also include additional comments for the author, including concerns about research or publication ethics.

You may also provide optional suggestions and comments to authors that they might find helpful in planning their study.

(Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: In this protocol proposal, Pa Pa Soe et al describe a possible review protocol to investigate how COVID-19-related restrictions impacted on sleep quality, physical exercise and dietary pattern.

The aim is quite ambitious, as the amount of manuscripts on the topic has steeply surged within the last year in relation with both healthy conditions and diseases. I would better highlight why authors decided to only include manuscript published between January and February 2021 and also I would further introduce the possible association between the physical exercise and quality of life, including the sleeping status, in both healthy controls and in patients with other diseases (see this works Durucan et al. 2022 [10.1097/MRR.0000000000000519]; Cunha et al. 2021 [10.1016/j.numecd.2021.12.019]; Carotenuto et al. 2021 [10.3390/jcm10061234]; Beydoun et al. 2022 [10.1093/gerona/glac028]; Bruno et al. 2022 [10.1016/j.sleep.2022.01.002]). All the aforementioned manuscript usually referred to people’s condition during the period you choose for selecting manuscript and hence, during the more severe COVID 19 restrictions.

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Reviewer #1: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Revision 1

List of Amendments

Line number- 24 (Abstract)

"Were" was corrected by "will be" because it should be future tense.

Line number- 25 (Abstract)

"applied and search work will take one month" were added to clearly mention the planned time of search work.

Line number- 26 (Abstract)

"usages" was substituted by "characteristics" because key search terms include the characteristics of physical activity (e.g. frequency, duration), diet (e.g. patterns, food types) and sleep (quality, timing).

Line number- 28 and 29 (Abstract)

" as well as the screening form and the PRISMA flow" were added because these are important information for the selection process of this review.

Line number-55 (Introduction)

Citation [5] was moved to the end of the relevant information in line numbers- 53 to 55 and put together with citations [6, 7, 8] (Line number-55) because these discussion points were concerned with citation [5].

Line number- 58 (Introduction)

Citation [8] was moved to the end of the relevant information and put together with citation [9] (Line number-58) because citation [8] covered the information of line numbers- 55 to 58.

Line number- 67 (Introduction)

Citations [13, 14] were removed due to duplication and putting them [13,14] (Line number-67) at the end of the summarized or paraphrased information will be more relevant.

Line number- 69 (Introduction)

Citation [15] was removed due to duplication.

Line number- 75 (Introduction)

Citation [4] was removed because the suggestion points cited with [4] and [16] were more relevant to only citation [16].

Line number- 76 (Last paragraph of the Introduction Section)

The last paragraph of the introduction section was substituted by some information in order to be the relevant and strong justification of the review objective.

Line number- 99 (Methods)

"a" was added for grammar correctness.

Line number- 102 (Methods)

"will be totally applied" were added for grammar correctness.

Line number- 105 (Eligibility Criteria)

"the effects of preventive public health measures" were substituted by "the Covid-19 restrictions" which are more precise words.

Line number- 118-121 (Controls)

The paragraph under the sub-title of "Controls" was removed and restructured with " This review will not try to analyze the statistical significances of the changing effects of physical activity, diet and sleep between healthy and unhealthy groups. Therefore, control studies and comparisons between the general population and other control groups will not be considered to include in this review."

Line number- 133 (List and Definitions of Variables)

"sex" was corrected by "sexes" for grammar correctness.

Line number- 158-160 (Study Design)

"because this review wants to explore the events of many countries affected by the Covid-19 and the Covid-19 widely spread across the world after October 2019" were added for justifying the publication date eligible for this review.

Line number- 168-175 (Information Sources and Search Strategy)

"Developing the screening form (including search terms, number of references screened per time, per reviewer and per database, reasons for inclusion/exclusion), exercising independent searches, discussions among reviewers will be ensured. Besides, inter-reviewer agreement form (including "Paper Code", "Paper Title", "Includable-Yes", "Excludable-No", Uncertain-Maybe" and "Reasons for Inclusion/Exclusion") will be developed and practiced for systematic selection of the studies. The completed search will take about one month and therefore will be planned to start on January 8, 2021, and end on February 8, 2021." were added for providing more information of search and selection processes.

Line number-179 (Table.1. Search Strategy)

"Duration (PA), Frequency (PA), Intensity (PA) and Types (PA)" were added under the column of Physical Activity for application of detailed search.

Line number- 216 (Limitations of the study design)

"bias" was corrected by "biases" for grammar correctness.

PRISMA checklist

In the connection with previous email, we uploaded the “PRISMA checklist” in this time. However, we had already uploaded the PRISMA-P checklist (S1 file) and I think it is entitled for the study protocol. May I upload both files if you don’t mind.

Attachments
Attachment
Submitted filename: Respnose to reviewers.docx
Decision Letter - Luigi Lavorgna, Editor

PONE-D-21-40766R1Changes in physical activity, dietary and sleeping pattern among the general population in COVID-19 : A systematic review protocolPLOS ONE

Dear Dr. Soe,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please include all references that the auditor has indicated to you.

Please submit your revised manuscript by May 16 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.
  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.
  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Luigi Lavorgna

Academic Editor

PLOS ONE 

Journal Requirements:

Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Revision 2

List of Amendments

1. Line 49-51 (Introduction)

“that can transform the different forms of variants: Alpha-B.1.1.7, Beta-B.1.351, Gamma-P.1, Delta-B.1.617.2 and Omicron-BA.1 or BA.2 [1]. Its infectivity“ was added and Citation [1] was newly added.

2. Line 52 (Introduction)

Citation number was changed from [1-3] to [2-4].

3. Line 54 (Introduction)

Citation number was changed from [4] to [5].

4. Line 54-57 (Introduction)

"This mandatory self-isolation may affect people’s physical and mental health" were was substituted by "since lifting the strategic restrictions has some important advantages such as limiting the spread of the Covid-19 virus, enhancing more preparation time for the preventive strategies and avoiding the new peak of the Covid019 outbreak [6]. However, these restriction measures are mandatory". Citation number [6] was newly added.

5. Line 59 (Introduction) (Reviewer #1’s comment)

Citation number was changed from [5-8] to [7-12] and citation number [11] and [12] was newly added to provide evidence for relevant information.

6. Line number- 60 (Introduction)

"may give rise" was changed to "gave rise" for correction.

7. Line number- 61 (Introduction)

"the physically active people may decrease their activity" was changed to "the physically active people decreased their activity " for correction.

8. Line number- 61-62 (Introduction)

"may not be likely to increase their daily PA" was changed to "were not likely to increase their daily PA" for correction.

9. Line number- 62 (Introduction)

"prolonged homestay may decrease the amount of daily PA performed" was changed to " prolonged homestay decreased the amount of daily PA performed " for correction.

10. Line 62 (Introduction)

Citation number was changed from [8,9] to [10,13].

11. Line 63 (Introduction)

Citation number was changed from [10] to [14].

12. Line 65 (Introduction)

Citation number was changed from [11] to [15].

13. Line 67 (Introduction)

Citation number was changed from [4,12] to [5,16].

14. Line 71 (Introduction)

Citation number was changed from [13,14] to [17,18].

15. Line 74 (Introduction)

Citation number was changed from [15] to [19].

16. Line 74 - 76 (Introduction) (Reviewer #1’s comment)

‘The studies revealed that PA decreased although eating pattern was healthy [11] while those who adopted unhealthy lifestyle encountered the lower sleep quality [12].’ was newly added and the citation number [11] and [12] was also newly cited.

17. Line 78 (Introduction)

Citation number was changed from [13] to [17].

18. Line 80 (Introduction)

Citation number was changed from [4] to [5].

19. Line 81 (Introduction)

Citation number was changed from [16] to [20].

20. Line 89 (Introduction)

Citation number was changed from [17] to [21].

21. Line 122 (Materials and Methods)

Citation number was changed from [3,17] to [4,21].

22. Line 131 (Materials and Methods)

Citation number was changed from [18] to [22].

23. Line 131 (Materials and Methods)

Citation number was changed from [19] to [23].

24. Line 204 (Risk of bias (quality) assessment)

Citation number was changed from [20] to [24].

25. Line number- 248-249 (References)

The following reference was added.

1. Genomic Epidemiology of hCov-19 [Internet]. GISAID - Initiative. 2022 [cited 2022 Apr 30]. Available from: https://www.gisaid.org/

26. Line number- 263-266 (References)

The following reference was added.

6. Coronavirus disease (COVID-19): Herd immunity, lockdowns and COVID-19 [Internet]. WHO | World Health Organization. [cited 2022 Apr 30]. Available from: https://www.who.int/news-room/questions-and-answers/item/herd-immunity-lockdowns-and-covid-19

27. According to reviewer #1, Durucan et al. 2022 [10.1097/MRR.0000000000000519]; Cunha et al. 2021 [10.1016/j.numecd.2021.12.019]; Carotenuto et al. 2021 [10.3390/jcm10061234]; Beydoun et al. 2022 [10.1093/gerona/glac028]; Bruno et al. 2022 [10.1016/j.sleep.2022.01.002] were suggested to investigate how COVID-19-related restrictions impacted on sleep quality, physical exercise and dietary pattern.

We had cited both Cunha et al. 2021 [10.1016/j.numecd.2021.12.019] and Bruno et al. 2022 [10.1016/j.sleep.2022.01.002] in the manuscript, however, the rest articles were left with the reason of unaligned study population (patients).

Attachments
Attachment
Submitted filename: Response to reviewers.docx
Decision Letter - Luigi Lavorgna, Editor

Changes in physical activity, dietary and sleeping pattern among the general population in COVID-19 : A systematic review protocol

PONE-D-21-40766R2

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

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Kind regards,

Luigi Lavorgna

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Formally Accepted
Acceptance Letter - Luigi Lavorgna, Editor

PONE-D-21-40766R2

Changes in physical activity, dietary and sleeping pattern among the general population in COVID-19: A systematic review protocol

Dear Dr. Soe:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Luigi Lavorgna

Academic Editor

PLOS ONE

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