Peer Review History

Original SubmissionOctober 4, 2021
Decision Letter - Sengottayan Senthil-Nathan, Editor

PONE-D-21-31910A novel binary pesticidal protein from Chryseobacterium arthrosphaerae controls Diabrotica virgifera virgifera via a different mode of action to existing commercial pesticidal proteinsPLOS ONE

Dear Dr. Sallaud,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

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We look forward to receiving your revised manuscript.

Kind regards,

Sengottayan Senthil-Nathan, Ph D

Academic Editor

PLOS ONE

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The project was supported by the SEMAE “French Interprofessional Organization for Seeds and Plants” former GNIS association under the call named “Fond Diabrotica”. 

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Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: 

RJ, VG, ST, AP, AMH, ZS, EB, MB, LB, PC, DV, WA, CA, FT, WP, TH, BH, ST, CS 

Grant number = “Fond Diabrotica" 

Funder = French Interprofessional Organization for Seeds and Plants” former GNIS association under the call named

URL of the funder = https://www.gnis.fr/

The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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Additional Editor Comments:

Minor revision is requested

Points to be consider:

In brief: A complete check for formatting and typographic errors must be done. I can’t understand several points because of language barrier.

Specific points:

Abstract needs to be modified to deliver a proper meaning.

Introduction

A clear picture of resistance and advantage of bio-insecticide should be provided.

At least refer following documents (10.3389/fphys.2019.01591, 10.1016/j.envint.2017.12.038, 10.3390/molecules26123695, 10.1016/j.aquatox.2020.105474)

I’m not convinced with method. Please prove detailed methodology for each experiment.

A proper explanation of obtained results with appropriate citations indicating all the results shall be included in the discussion

Complete update of citations throughout from introduction to discussion is needed.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

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2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

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3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

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4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

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5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: In this study, the effect of GDI0005A and GDI0006A recombinant proteins on the Western Corn Rootworm (WCR) was investigated. The results showed that these proteins showed good insecticidal activity against the larvae of WCR. This reviewers thinks that the experiment is well design and properly executed . The manuscript is well written, especially for a person without a strong background in molecular biology. Hence it can reach general readers of PlosOne .This reviewer believes, this manuscript it fits for PlosOne after some minor revisions (below).

1. Brief introduction why this strain was selected could be included in the introduction.

2. Despite the method is clear, it is not clear how and why the binary toxins (GDI0005A and GDI0006A) were detected at the first place as candidate of the novel toxin? From the genome?

3. Predicted protein sequences were annotated based on homology to sequences in public databases. Provide details what public databases that are used in this study.

4. Reference for the bioinformatics tools (not only links to their gihub) i.e. SPADES and Prodigal will be appreciated.

5. Why after scoring, the experimental plates were placed in a -80˚C freezer prior calculating the total weights?

Reviewer #2: The manuscript entitled A novel binary pesticidal protein from Chryseobacterium arthrosphaerae controls

Diabrotica virgifera virgifera via a different mode of action to existing commercial

pesticidal proteins..”is a result of planned research. In general, the paper is well written, concise and the subject is interesting.

Manuscript contains significant information to justify publication. Some minor corrections need to be performed to improve the paper.

Comments:

1. Proof read the entire manuscript for typographical errors and fix all grammatical errors. In case extensive revision of the English language has been recommended.

2. The manuscript title is not particularly appropriate and needs to be revised in terms of grammar.

3. Please revise the abstract. The abstract should contain a summary of the results and should exclude the irrelevant content. The abstract must provide enough information that will allow a reader to understand the key findings of the research.

4. Latest references are missing in the entire manuscript; following are few latest references suggested, can be used in material method and discussion section.

5. Introduction section should be clear with research gaps and how the present work going to contribute in advanced scientific research

6. Author can cite the related articles on pyrethroids such as doi: 10.1007/s13205-016-0372-3;DOI: 10.3390/microorganisms8020223;https://doi.org/10.1007/s13205-016-0541-4;doi.org/10.3389/fmicb.2019.01778

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Reviewer #1: No

Reviewer #2: Yes: Pankaj Bhatt

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Revision 1

Responses to Editor Comments:

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming.

Authors: The manuscript has been reviewed according to PLOS ONE’s style requirements.

2. Thank you for stating the following in the Acknowledgments Section of your manuscript:

Authors: Funding information was removed from the manuscript and the amended statements are found in this cover letter

3. We note that you have stated that you will provide repository information for your data at acceptance. Should your manuscript be accepted for publication, we will hold it until you provide the relevant accession numbers or DOIs necessary to access your data. If you wish to make changes to your Data Availability statement, please describe these changes in your cover letter and we will update your Data Availability statement to reflect the information you provide.

Authors: GDI0005A and GDI0006A are available in Genbank under accession numbers OK428600 and OK428601 respectively. Information has been added in the supplemental table S1. They have also been registered in Bacterial Pesticidal Protein Resource Center [BPPRC] database under the name Xpp84Aa1 (GDI0005A) and Xpp85Aa1 (GDI0006A). This information has been added in the text of the manuscript in the first chapter of the result part.

4. PLOS ONE now requires that authors provide the original uncropped and unadjusted images underlying all blot or gel results reported in a submission’s figures or Supporting Information files.

Authors: An original image of the Figure 8B has been uploaded to Plos site.

5. Please review your reference list to ensure that it is complete and correct

Authors: The reference list has been fully reviewed

Additional Editor Comments: Minor revision is requested

In brief: A complete check for formatting and typographic errors must be done. I can’t understand several points because of language barrier.

Authors: The manuscript has been thoroughly re-cheeked for formatting and typographic errors. It has also been reviewed by another English native speakers.

Specific points:

Abstract needs to be modified to deliver a proper meaning.

Authors: We have entirely revised the abstract and hope it has largely improved.

Introduction

A clear picture of resistance and advantage of bio-insecticide should be provided.

At least refer following documents (10.3389/fphys.2019.01591, 10.1016/j.envint.2017.12.038, 10.3390/molecules26123695, 10.1016/j.aquatox.2020.105474)

Authors: Two suggested references (ref 36 & 37) were included in the introduction to add a better overview on bio-insecticide advantages

Method: I’m not convinced with method. Please prove detailed methodology for each experiment

Authors: All methods have been reviewed and improved by all co-authors. Please kindly refer to our improvements visible through the tracked changes.

A proper explanation of obtained results with appropriate citations indicating all the results shall be included in the discussion

Authors: The discussion has been reviewed to better explain all results obtained with appropriate citations.

Complete update of citations throughout from introduction to discussion is needed.

Authors: we have reviewed all citations throughout all the document

Reviewers' comments:

Reviewer #1:

In this study, the effect of GDI0005A and GDI0006A recombinant proteins on the Western Corn Rootworm (WCR) was investigated. The results showed that these proteins showed good insecticidal activity against the larvae of WCR. This reviewer thinks that the experiment is well design and properly executed. The manuscript is well written, especially for a person without a strong background in molecular biology. Hence it can reach general readers of PlosOne. This reviewer believes, this manuscript it fits for PlosOne after some minor revisions (below).

Authors: We are pleased to hear that the reviewer sees high value in our scientific findings and believes our experiments were done correctly and our manuscript is well written. We like to also thank for the valuable comments we have now addressed.

Authors: We have revised the manuscript regarding English and readability. The paper has been reviewed by an English native speaker. We have also double-checked for formatting and typing errors

1. Brief introduction why this strain was selected could be included in the introduction.

Authors: A description on the strategy used to select the strain has been added

2. Despite the method is clear, it is not clear how and why the binary toxins (GDI0005A and GDI0006A) were detected at the first place as candidate of the novel toxin? From the genome?

Authors: Yes, the candidates were detected from the genome - The information has been added more clearly in the first paragraph of the results in association with the description of the strategy mentioned in the previous paragraph 1.)

3. Predicted protein sequences were annotated based on homology to sequences in public databases. Provide details what public databases that are used in this study.

Authors: The information on which public databases was used is now mentioned in the text. It is BPPRC, UniProtKB, public patent databases such as EPO and USPTO

4. Reference for the bioinformatics tools (not only links to their gihub) i.e. SPADES and Prodigal will be appreciated.

Authors: References for SPADES and Prodigal were added

5. Why after scoring, the experimental plates were placed in a -80˚C freezer prior calculating the total weights?

Authors: Larvae cannot be weighed while they are still alive, so it is why they are killed by placing them in a freezer.

Reviewer #2: The manuscript entitled A novel binary pesticidal protein from Chryseobacterium arthrosphaerae controls

Diabrotica virgifera virgifera via a different mode of action to existing commercial

pesticidal proteins..”is a result of planned research. In general, the paper is well written, concise and the subject is interesting. Manuscript contains significant information to justify publication. Some minor corrections need to be performed to improve the paper.

Authors: We are pleased to hear that the reviewer finds our scientific findings interesting and believes our manuscript is concise and well written. We like to also thank for the valuable comments we have now addressed.

1. Proof read the entire manuscript for typographical errors and fix all grammatical errors. In case extensive revision of the English language has been recommended.

Authors: The manuscript has been thoroughly re-cheeked for formatting and typographic errors. It has also been reviewed by another English native speakers. Please refer to all the tracked changes in the manuscript.

2. The manuscript title is not particularly appropriate and needs to be revised in terms of grammar.

Authors: A novel title is proposed

3. Please revise the abstract. The abstract should contain a summary of the results and should exclude the irrelevant content. The abstract must provide enough information that will allow a reader to understand the key findings of the research.

Authors: The abstract has been reviewed by several authors. Please refer to all the tracked changes in the manuscript.

4. Latest references are missing in the entire manuscript; following are few latest references suggested, can be used in material method and discussion section.

Authors: All references were reviewed

5. Introduction section should be clear with research gaps and how the present work going to contribute in advanced scientific research

Authors: The introduction has been reviewed to better explain research gaps and how the present work can contribute in advanced scientific research.

6. Author can cite the related articles on pyrethroids such as doi: 10.1007/s13205-016-0372-3;DOI: 10.3390/microorganisms8020223;https://doi.org/10.1007/s13205-016-0541-4;doi.org/10.3389/fmicb.2019.01778

Authors: The following reference was added in the introduction –

DOI: 10.3390/microorganisms8020223;

Attachments
Attachment
Submitted filename: Response To Reviewers.docx
Decision Letter - Sengottayan Senthil-Nathan, Editor

A novel binary pesticidal protein from Chryseobacterium arthrosphaerae controls western corn rootworm by a different mode of action to existing commercial pesticidal proteins

PONE-D-21-31910R1

Dear Dr. Sallaud,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Sengottayan Senthil-Nathan, Ph D

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

The manuscript can be accepted now

Reviewers' comments:

Formally Accepted
Acceptance Letter - Sengottayan Senthil-Nathan, Editor

PONE-D-21-31910R1

A novel binary pesticidal protein from Chryseobacterium arthrosphaerae controls western corn rootworm by a different mode of action to existing commercial pesticidal proteins

Dear Dr. Sallaud:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Prof. Sengottayan Senthil-Nathan

Academic Editor

PLOS ONE

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