Peer Review History
| Original SubmissionApril 16, 2021 |
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PONE-D-21-12444 Identifying monitoring information needs that support the management of fish in large rivers PLOS ONE Dear Dr. Counihan, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. We have now received reviews from two anonymous. As you can see from their relatively brief comments, they both agree on the value of the proposed conceptual model for identifying information gaps and guide monitoring in conservation science. However, they also point out some important shortcomings that need your attention. The same set of issues were raised by both reviewers. Reviewer 1 wonders about the utility of such conceptual models in the more realistic case of multiple species contexts. How could the model be expanded in this regard, besides the case of simple richness measures? In addition, how could the model help in actually prioritising or ranking the variables or interactions identified? Finally, reviewer 1 also noticed that an important stressor related to fragmentation and connectivity is only marginally discussed and included in the model. This is critical for meta-population dynamics and should be given more emphasis. Reviewer 2, similarly raises the critical issue of the multi-species context, and how the needs of different species could be simultaneously identified. Therefore, I advice to expand the Discussion in this regard, eventually acknowledging limitations and suggesting future research needs. Reviewer 2 also wonders how such models could effectively guide restoration and decision-making beyond monitoring needs; if the relative importance of data gaps and interactions is not quantified (e.g. via a cost-benefit analysis), how could it help prioritise the focus of monitoring and action? Besides carefully responding to each reviewers' comments and modify the manuscript accordingly, I also suggest to simplify the manuscript, which feels rather long. Perhaps some of the background information from each case study could be included as supplementary or shortened. Also, caption from Fig.5 (and sister-figures) is rather hard to digest for the reader. I wonder if this could be simplified as well. I believe that the issues raised by the reviewers are valid and should considered with great care before we can accept the manuscript, even though both proposed 'minor revisions' are needed. We look forward to your revision in due time. Please submit your revised manuscript by Jul 31 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Stefano Larsen Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. Additional Editor Comments (if provided): [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: N/A Reviewer #2: N/A ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: In this study a conceptual model is used to aid the development of best practices of large river monitoring programs. The model was developed based on former scientific works and during scientists workshop negotiations. Case study applications prove that the application of this complex conceptual model can be useful to identify critical information gaps, which can then be used to develop management and monitoring objectives. I like the approach of developing such conceptual models, which can reveal information gaps, and think that the model in general can be useful to adopt across large river systems with some refinements and local adaptations. Consequently, I believe showing such an approach can provide useful information for the readers. What I lack is to show more convincingly how such complex models can be used for multispecies systems, where not only the requirements of a single species is evaluated, which in fact the more realistic situation. How can individual species level models be put together to provide meaningful information for management? It would be useful to discuss this in more detail in the Discussion section. Also a critical issue which should be briefly discussed is how the identified critical target variables should be prioritized, especially in a multispecies systems, where several variables will appear. Development of this section could convince the reader and could clearly show the applicability of such conceptual models by management. Although channel morphology/hydraulics may contain fragmentation/connectivity issues this should be made more clear in the material, because this is one of the most critical issue, which determine fish (meta)population or metacommunity dynamics. In fact fragmentation is often used as one of the most critical variable of anthropogenic drivers and as such is a critically important target to mitigate by management. However, it does not appear either in Fig 2 or Fig 3, but only on the case study figures belonging to morphology/hydraulics TIER1 components. Reviewer #2: Dear Editor, This study demonstrates how a conceptual model can be used to identifying knowledge gaps in the mechanisms by which Essential Ecosystem Characteristics influence large-river fish species in the USA. These gaps should then be filled to improve the effectiveness of restoration and management. I agree on the value of these conceptual models to identify knowledge gaps and inform decisions on what to monitor to fill them and allow a better understanding of the system and, therefore, enhance our capacity to manage them adequately. However, I disagree with some of the arguments: - The conceptual model represents potential interactions across different structural element of the river system but does not allow quantitative evaluations of strength of those interaction. As such, the value of is conceptual model is limited to identifying knowledge gaps and cannot be used to evaluate the relative importance of each interaction. Therefore, this conceptual model should only be used for identifying knowledge gaps and not for decision-making, as argued (see L771-773), beyond monitoring. - The conceptual model lacks a cost analysis to evaluate the most efficient way of filling knowledge gaps. Some of the gaps might be more difficult/ costly or even feasible to fill. Without such analysis we can only identify the gaps but cannot prioritise where to focus monitoring on a cost-effective way and just confirm where gaps exist. - Three of the case studies present conceptual models for individual species. While I see the value of developing these conceptual models for charismatic endangered species, I wonder how feasible/ useful it would be this method when facing management needs for many species simultaneously. One of the case studies does present a conceptual model for the full fish community, but focused on diversity, rather than individual species, so no information of particular species issues are addressed. Would it be feasible to elaborate a conceptual model that addressed all individual species needs/ issues simultaneously? This would allow identifying knowledge gaps common to multiple species simultaneously. Minor comments: - L304 & 369. What does ATV stand for? - The manuscript is quite long, especially because of the description of each case study. It would be good to present the information of these case studies in a more synthetic way (maybe on a table?). ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-21-12444R1 Identifying monitoring information needs that support the management of fish in large rivers PLOS ONE Dear Dr. Counihan, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== Dear Dr Counihan, first of all, I apologize for the very long processing time of you manuscript. We have now obtained comments from two additional reviewers; they were aware that the manuscript was already revised and they also had access to the original (first round) comments. Both reviewers clearly see the value of this work. Reviewer 3 makes an important point regarding the usability of your approach beyond the specific case studies and the scientists involved. In order to facilitate the uptake of your approach to a wider audience, perhaps a step-by-step guide or a concise follow-through instruction box could really help. Reviewer 4 has only minor comments and suggests edits to aid readability of the manuscript. Please note that Reviewer 4 has included an attachment. We will be pleased to accept this paper once you considered both reviewers comments carefully. Looking forward to receive the last revision. Many thanks for your patience ============================== Please submit your revised manuscript by Dec 25 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Stefano Larsen Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #3: (No Response) Reviewer #4: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #3: Yes Reviewer #4: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #3: N/A Reviewer #4: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #3: (No Response) Reviewer #4: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #3: Yes Reviewer #4: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #3: This revised manuscript defines and explores a conceptual model setting a structured framework that aims to identify gaps in monitoring information that could inform the management of fish in large rivers. After reading the manuscript, I still have the general feeling that something is lacking to make a more useful contribution to river and fish managers. As it stands, I feel that the manuscript is the result of trying to synthetize discussions and outcomes from the held workshops. But the manuscript tries to offer more than that. If I understand well, the authors want to provide a model to be followed so that, at the end, the model user comes out with the variable(s) that would need to be measured in order to fill the knowledge gap(s) that we need to improve the management of a river or a species. If the authors want their model to be used by other researchers and managers than those that participated to the workshops and those that work on the four study cases, a clear guidance through the different steps should be provided, just as a manual. Otherwise, the manuscript is just the result of a brainstorming that the authors want to share in a paper. I am NOT saying that the information provided in the manuscript is useless or has no rigor or significance. On the contrary, I think the manuscript brings interesting evidence and synthesis. I am just saying that if the authors want their model to be used, they need to provide clear step-by-step guidance. I think this is more useful than case studies if they want the model to be largely used. PlosOne is publishing papers on the basis of methodological rigor and high ethical standards. Based on that and since the manuscript is rather conceptual, I think the manuscript can be published in this journal without further changes, so that my above general comment is only a suggestion. L. 114-116. Something is missing in this sentence? L.264. add “hierarchically” after “the spatial scales considered are” L.512-515. This is repeated in many figures. Consider reducing this to avoid repetitions Resolution of the figures must be improved Reviewer #4: In this manuscript the authors used a conceptual model to help management of large river monitoring programs in identifying knowledge gaps. I believe the authors have addressed very well the comments from the first round of review. For this reason the manuscript story and approach sound solid with a good description for the four cases, highlighting the main potential factors of disturbance and knowledge gaps in large rivers as well as when informations are not enough and more data are necessary. I have included in the attached pdf some small comments to help the authors to improve the readability, and I believe that the authors would not need any additional comment on the main manuscript concept. Best regards ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #3: No Reviewer #4: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 2 |
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PONE-D-21-12444R2Identifying monitoring information needs that support the management of fish in large riversPLOS ONE Dear Dr. Counihan, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Mar 11 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Stefano Larsen Academic Editor PLOS ONE Additional Editor Comments: Dear Dr. Counihan, Thanks for your patience during this long review process. It looks as though you have clarified all reviewers' comments, and we are ready to accept the manuscript for publication. However, although you mentioned to have checked the resolution of the Figures, they still look rather fuzzy to me, and difficult to read. If I zoom in the figures in the manuscript pdf, they really look out of focus. Please, rework the figures and submit a clearer version. I have scored the ms as 'minor revision', but note that higher resolution images need to be included. Looking forward to hear from you SL [Note: HTML markup is below. Please do not edit.] Reviewers' comments: [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 3 |
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Identifying monitoring information needs that support the management of fish in large rivers PONE-D-21-12444R3 Dear Dr. Counihan, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Stefano Larsen Academic Editor PLOS ONE Additional Editor Comments (optional): Dear Dr Counihan, thanks for clarifying our queries regarding the Maps. Reviewers' comments: |
| Formally Accepted |
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PONE-D-21-12444R3 Identifying monitoring information needs that support the management of fish in large rivers Dear Dr. Counihan: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Stefano Larsen Academic Editor PLOS ONE |
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