Peer Review History
| Original SubmissionDecember 28, 2021 |
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PONE-D-21-40761Indigenous microorganisms relieved the benefits of growth and nutrition regulated by arbuscular mycorrhizal fungi for four pioneer herbs in karst soilPLOS ONE Dear Dr. He, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== ACADEMIC EDITOR: The study is interesting and the manuscript is relatively well written. But the manuscript still have some problems as suggested by the reviewers. The authors should respond to the comments of the reviewers one by one and revise the manuscript accordingly. ============================== Please submit your revised manuscript by Mar 04 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Jian Liu Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We note that the grant information you provided in the ‘Funding Information’ and ‘Financial Disclosure’ sections do not match. When you resubmit, please ensure that you provide the correct grant numbers for the awards you received for your study in the ‘Funding Information’ section. 3. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: Yes Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: In this manuscript, the authors explored and discussed the interactions between Arbuscular mycorrhizal and indigenous microorganisms in regarding to their effects on plant growth and nutrient accumulation. The findings may help elucidate the role of AMF and other soil microorganisms in constructing the plant communities in the Karst area in China. Main suggestions; 1. ‘Relieve’ usually refers to lightening the pressure, stress, weight, etc. on (something)(https://www.collinsdictionary.com/us/dictionary/english/relieve), which is the bad situation of something. Therefore, ‘offset’ is recommend here to replace ‘relieve’. The definition of ‘offset’ is something that counterbalances, counteracts, or compensates for something else; compensating equivalent (https://www.collinsdictionary.com/us/dictionary/english/offset). 2. Th title is suggested as ‘Indigenous microorganisms relieved the benefits of growth and nutrition regulated by inoculated arbuscular mycorrhizal fungi for four pioneer herbs in karst soil’,as the the native soil microbes and native AMF were not separated in this study. 3. There are too many English grammar mistakes in the manuscript. It is strongly suggested that the English expresses should be checked through the whole manuscript. Some corrections were made in the manuscript. 4. Line 353: the treatment description is not consistent with the Methods part. 5. In the Discussion part, there are too much discussions on the effects of AMF, which were already intensively studied by other researchers. Furthermore, it is better to extend the findings of this study to the mechanisms of ecological processes in the Karst area or how this findings can be applied in the restoration of the vegetation in the Karst area. Reviewer #2: This article entitled "Indigenous microorganisms relieved the benefits of growth and nutrient regulated arbuscular mycorrhizal fungi for four pioneer herbs in karst soil", provides an interesting work about the effects of mycorrhizal fungi interacting with indigenous microorganisms on plants in degraded soil. The authors claimed that the indigenous microorganisms relieved the benefits of AM fungi in the growth and nutrient absorption of four plants in kast. The topic is very interesting and innovative. The experiment is well done and the writing is good. Some modifications are necessary before the consideration of publication. In general: 1. How can you give the H2 “Indigenous microorganisms relieved the benefits of AM fungi on 98 plant growth and nutrient accumulation”? it is not enough based your literatures review to deduce this H2. 2. Why you chose the four species to manipulate the experiment? Please give the reason. 3. In the discussion you paid more attention on the effect of AMF on plant growth and nutrient absorption. However, I think the combined effects of mycorrhizal fungi and indigenous microorganisms is more important to explanation. Some details: 1. Line 36: indigenous microbes are inconsistent with line 28. 2. Line 106-108: do you sure the consistency of soil condition in physicochemical properties in AMF, AMI and CK? It is different in natural soil and sterilized soil in general cognition except for microbes. 3. Line 118: 10 g Glomus mosseae should being 10 g Glomus mosseae inoculum. 4. Line 118-119: Did the 10 g Glomus mosseae inoculum include the spore, hyphal and root piece? Please give the information. 5. Line 152: are you sure this condition is the constant weight of drying? 6. Line 173-174: Whether the data has been tested for normality and homogeneity of variance before analysis? In the best way, additional description is necessary to ensure the feasibility of statistical data. 7. Line 154-156: how to calculate the accumulations, can you give us the details about it? 8. Line 290-291: Change "in negative N/P of " for "in negative N/P ratio of "; Change "in positive N/P of " for "in positive N/P ratio of "; 9. Line 322: Change " the N/P of " for "the N/P ratio of " 10. Line 272-273: the indigenous microorganisms relieved the benefits of AM fungi on P accumulation. This sentence is unclear and contradicts the first part of the sentence (AM fungi improved P accumulation). 11. Line 376: Change "streptomycetes " for " Streptomyces sp." Reviewer #3: Soil microbial interactions play an important role for plant adaptation in natural habitat. As a kind of beneficial microorganisms, Arbuscular mycorrhizal fungi largely promote growth via the improvement of mineral nutrients for the host plant. This paper attempts to solve the interaction between AM fungi and indigenous microorganisms and explore the benefits of indigenous microorganisms on AM fungi promoting plant growth and nutrient utilization through four karst herbs, which were planted in three different microbial condition soil. The results indicated that the indigenous microorganisms relieved AM fungi's benefits in biomass and nutrient accumulation for plants. I believe this work is interesting and meaningful to apply mycorrhizal technology for restoring in degraded karst areas. However, it still needs to improve in some points as the potential publication of this paper, in detail as follows: 1.Line 92-95: This sentence of “Thus, an experiment was ……with indigenous microorganisms”, is not necessary in the Introduction section. It is better to take it into the Methods section. 2.Line 103: do the “1120m.a.s.l” represent elevation? Please correct it. 3.Line 104: “ soil microbial conditions” should be “ soil microbial condition soil”. 4.Line 110: specify limestone soil as International Soil Classification 5.Line 117-118: I confused the reason about promoting germination rate by yours treatment of 200g soil. Please check it and clear it. 6.Line 121-122: This does not makes sense at all. Are you saying that you added AMF inoculum to your treatment control? If so, that does not constitute a control at all. 7.Line 121-123 This part (starting from "Especially, a 10 g…" and ending on "… a double-layer filter paper") is not clear at all. Please make it clear. 8.Line 302: please correct the citation of He, Jiang et al.(2017). 9.Line 328: please correct the citation of Shen, Cornelissen et al.(2017). Check all reference citations in full text, I think it's not standard. 10.Line 332-335: This sentence was so long, I'm very confused with this result; please make it clear and shorten it. 11.Lin 399: change “we can say that” being “ we suggest that”, delete “Finally”. 12.The discussion needs further refinement and accuracy, comparing your results with previous researches for drawing relevant conclusions. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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PONE-D-21-40761R1Indigenous microorganisms offset the benefits of growth and nutrition regulated by inoculated arbuscular mycorrhizal fungi for four pioneer herbs in karst soilPLOS ONE Dear Dr. He, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== ACADEMIC EDITOR: The revised version has been improved a lot. But the manuscript still has some problems as suggested by the reviewer. ============================== Please submit your revised manuscript by Apr 14 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Jian Liu Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: Yes Reviewer #3: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: 1. Line 37-39. What is the purpose to compare the growth status of the species in this experiment? Is it essential for this topic? 2. Line 93-94. What were the evidences to support this hypothesis before this research was conducted? 3. Please add sub-headlines for the Discussion part. It is not clear what is the central topic for each paragraph. Still,there are too many discussions on the roles of AMF on plant growth, which were not the central topic of this study. 4. Line 396-399. The first argument is self-contradictory with the following statement. 5. Line 399-401. What is the significance of this finding? 6. Some grammar mistakes and English expressions are corrected in the tracked PDF. Reviewer #2: Thanks for the authors. I think all the comments have been addressed so far. I have no other questions. Reviewer #3: All comments were addressed. In this edition, the results and discussion were reorganized and now are clear for readers. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 2 |
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PONE-D-21-40761R2Indigenous microorganisms offset the benefits of growth and nutrition regulated by inoculated arbuscular mycorrhizal fungi for four pioneer herbs in karst soilPLOS ONE Dear Dr. He, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== ACADEMIC EDITOR: The revised version has been improved a lot. All the comments have been addressed. But the authors still need to polish the language and revise the language errors. For example: Line 390 : “the benefits form” should be “the benefits from”. ============================== Please submit your revised manuscript by Apr 20 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Jian Liu Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. Additional Editor Comments (if provided): The revised version has been improved a lot. All the comments have been addressed. But the authors still need to polish the language and revise the language errors. For example: Line 390 : “the benefits form interaction” should be “the benefits from interaction” [Note: HTML markup is below. Please do not edit.] Reviewers' comments: [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 3 |
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Indigenous microorganisms offset the benefits of growth and nutrition regulated by inoculated arbuscular mycorrhizal fungi for four pioneer herbs in karst soil PONE-D-21-40761R3 Dear Dr. He, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Jian Liu Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-21-40761R3 Indigenous microorganisms offset the benefits of growth and nutrition regulated by inoculated arbuscular mycorrhizal fungi for four pioneer herbs in karst soil Dear Dr. He: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Jian Liu Academic Editor PLOS ONE |
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