Peer Review History
Original SubmissionOctober 26, 2021 |
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PONE-D-21-34303Antimicrobial efficacy and possible mechanism of action of 2-hydroxyisocaproic acid (HICA)PLOS ONE Dear Dr. Gupta, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please, carefully consider the reviewer's comments. Particularly regarding on what you can discuss based on your results. Please submit your revised manuscript by Jan 20 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. Any potentially identifying patient information must be fully anonymized. Important: If there are ethical or legal restrictions to sharing your data publicly, please explain these restrictions in detail. Please see our guidelines for more information on what we consider unacceptable restrictions to publicly sharing data: http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. Note that it is not acceptable for the authors to be the sole named individuals responsible for ensuring data access. We will update your Data Availability statement to reflect the information you provide in your cover letter. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This is an interesting paper with potentially significant findings. However, there are multiple important points that require clarification: 1. Which HICA was used? Was it DL-HICA? 2. What was the pH of HICA solution and the final pH during the incubations? HICA comes in two isoforms of which DL is the more active one. It only stays in DL isoform in low pH and in more neutral conditions it becomes a racemic solution. Please clarify in the methods and discuss in the discussion if relevant. There is no mention of what controls were used. Looking at Figure 1 it looks like there was a non-HICA containing control. 1. What was the pH of this non-HICA containing control? 2. What other controls were used in the various experiments? 3. Please clarify for all experiments what controls were used. The Discussion is far too long and starts off as a second introduction. Please focus on discussing your own results here. Also, please discuss the limitations of the study and the methods used. Please do not speculate beyond your results. Reviewer #2: This study evaluates antibacterial effect of a natural compound 2-hydroxyisocaproic acid and shows new interesting perspectives of possible antibacterial mode of action this agent. The mode of action has been studied with several different methods. There are several points in the study, which should be considered, and corrected or explained. 1. Title and the text: Is it better to use antibacterial term together with or instead of antimicrobial, because it could be more precise in this context? 2. Materials and methods: Row 107 "our laboratory culture collection." Which is the name of the organization? 3. Materials and methods: The testings of antimicrobial susceptibility of bacteria are told to be performed with three replicates, but obviously not repeated in this study. Therefore, the degree of evidence should be considered. Antibacterial efficacy of 2-hydroxyisocaproic acid has been reported earlier against Escherichia coli, Pseudomonas aerunginosa and Staphylococcus aureus, but there are several bacterial species included in this study, which are tested for the first time. Is the evidence of their susceptibility for HICA sufficient? Repetition of the efficacy testings of bacterial species is recommended. 4. Materials and methods: What is the pH-value, in which the experiments have been performed? This might have an influence on antibacterial effect. 5. Materials and methods: Were the final test concentrations, for which the bacterial strains and isolates were exposed 0,5-32mg/mL or lower after adding 50 microliter of bacterial suspension and 50 microliter of MHB to 100 microliter of test solutions? This should be explained more clearly in the text, and corrected to the results, if needed. 6. Materials and methods: In the row 125: "or water (untreated control)". Isn't this sterile water? 7. Materials and methods: Sterile water in MHB acted as a negative control in the efficacy testings. Were there used any positive control, which is known to kill the bacterial strains? 8. Materials and methods: There are multiple methods used in this study, but all bacterial strains, which are introduced in the beginning of Materials and method section are not tested in all experiments. The bacterial strains and isolates, which are tested in different experiments (range 2-14) should be clarified in the text. Because of using the terms Gram-positive and negative bacteria readers may suppose that all 14 strains and isolates have been tested in all experiments. 9. Statistical analyses in the bacterial susceptibility testings are told to been done with single factor ANOVA, for which the results should be normally distributed. Three replicates per group is also the lowest number of replicates for these analyses. Is the normal distribution of the results within the groups confirmed or has this been possible? 10. Results: Row 294: "Florescence" should be corrected fluorescence. 11. Results: In the row 329 there is written: "HICA addition induced a rapid depolarisation of the cytoplasmic membrane of both Gram-positive and Gram-negative bacteria as evident by rapid increase in fluorescence intensities." However, the colors blue/red possibly shows the opposite in the Figure. This should be corrected. 12. Discussion: In the Discussion there is a risk for misinterpretation of the results. For instance, the term of Gram-positive bacteria as plural may end up to larger adaptation of the results than is meaningful. As earlier was mentioned, all bacterial strains (n=14) included in the first part of the study are not tested in the other parts of the study. The number of bacterial strains tested in them varied from 2 to 7. So, the results should be adapted only on the tested bacterial strains and isolates of each experiment, not on all Gram-positive and Gram-negative bacteria in general. For clarity, the names of tested bacterial strains and their designation codes should be written in the Discussion text. Some examples are below. a. "Further evidence for the antimicrobial effect of HICA was provided using the bacterial cell viability assay of several Gram-positive and Gram-negative bacteria." Comment: The exact amount of Gram-positive and Gram-negative bacterial strains should be mentioned, like three Gram-positive bacterial and four Gram-negative bacterial strains. And the bacterial strains tested should be mentioned by their names and designation codes (or by other distinctive manners). b. "HICA disrupted the cell membrane integrity of both Gram-positive and Gram-negative bacteria (Fig 2)." Comment: Please, tell also the exact amount of tested bacterial strains (n=7?) and individualize them in this part of the study. c. "This characteristic of NPN is used to examine the permeability of the outer membrane of Gram-negative bacteria [21]." Comment: Name exactly the bacterial strains, which were tested in this method of the study (n=4?). d. "The effect of HICA on the cytoplasmic membrane potential of both Gram-positive and Gram-negative bacteria were examined using the membrane potential-sensitive dye 3,3'-Dipropylthiadicarbocyanine iodide [DiSC3(5)]." Comment: Please, individualize the bacterial strains, which were tested in this part of the study (n=2) for the reason mentioned earlier. e. "In the present study, B. cereus and P. aeruginosa were selected as model microorganisms to investigate the morphological changes in Gram-positive and Gram-negative bacteria after HICA treatment." Comment: Please, individualize the exact bacterial strains, which were used in both electron microscopy methods, because there were some other strains from these species included in the study too. 13. Discussion: "sub and supra-MIC" Comment: Is this expressed in correct language? Should it be written as: below and beyond, or under and over the minimum inhibitory concentrations? [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
Revision 1 |
PONE-D-21-34303R1Antibacterial efficacy and possible mechanism of action of 2-hydroxyisocaproic acid (HICA)PLOS ONE Dear Dr. Gupta, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please consider mainly the first suggestion of the reviewer, that I consider will improve the document. Please submit your revised manuscript by Apr 03 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Guadalupe Virginia Nevárez-Moorillón, Ph.D. Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The manuscript has improved but there are still a number of outstanding issues: 1. The lack of pH controls needs to be at least discussed. Ideally the experiments would be repeated with them but an insightful discussion may suffice. It is well known that some microbes tolerate low pH poorly whereas others benefit from it. It would be important to know if the effects seen are actually due to the antimicrobial effect of HICA or the low pH (as low as 3 as stated in the methods). 2.I note that the word antimicrobial has been changed to antibacterial throughout. I presume this is due to comments made by the reviewers. The change is correct in some instances but in others not. HICA does have antifungal activity (see reference below) and when described more broadly antimicrobial activity is more appropriate than antibacterial activity. The authors need to go through each of those changes and check what exactly they mean and which of the two words is more appropriate. Sakko M, Moore C, Novak-Frazer L, Rautemaa V, Sorsa T, Hietala P, Järvinen A, Bowyer P, Tjäderhane L, Rautemaa R.2-hydroxyisocaproic acid is fungicidal for Candida and Aspergillus species. Mycoses. 2014 Apr;57(4):214-21. doi: 10.1111/myc.12145. Epub 2013 Oct 11. Nieminen MT, Novak-Frazer L, Rautemaa V, Rajendran R, Sorsa T, Ramage G, Bowyer P, Rautemaa R. A novel antifungal is active against Candida albicans biofilms and inhibits mutagenic acetaldehyde production in vitro. PLoS One. 2014 May 27;9(5):e97864. doi: 10.1371/journal.pone.0097864. A recent publication on HICA activity against anaerobic bacteria is also relevant for this paper. Sakko M, Rautemaa-Richardson R, Sakko S, Richardson M, Sorsa T. Antibacterial Activity of 2-Hydroxyisocaproic Acid (HICA) Against Obligate Anaerobic Bacterial Species Associated With Periodontal Disease. Microbiol Insights. 2021 Oct 21 [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
Revision 2 |
Antibacterial efficacy and possible mechanism of action of 2-hydroxyisocaproic acid (HICA) PONE-D-21-34303R2 Dear Dr. Gupta, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Guadalupe Virginia Nevárez-Moorillón, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
Formally Accepted |
PONE-D-21-34303R2 Antibacterial efficacy and possible mechanism of action of 2-hydroxyisocaproic acid (HICA) Dear Dr. Gupta: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Guadalupe Virginia Nevárez-Moorillón Academic Editor PLOS ONE |
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