Peer Review History

Original SubmissionOctober 26, 2021
Decision Letter - Guadalupe Virginia Nevárez-Moorillón, Editor

PONE-D-21-34303Antimicrobial efficacy and possible mechanism of action of 2-hydroxyisocaproic acid (HICA)PLOS ONE

Dear Dr. Gupta,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please, carefully consider the reviewer's comments. Particularly regarding on what you can discuss based on your results. 

Please submit your revised manuscript by Jan 20 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.
  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.
  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Guadalupe Virginia Nevárez-Moorillón, Ph.D.

Academic Editor

PLOS ONE

Journal Requirements:

When submitting your revision, we need you to address these additional requirements.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at 

https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 

https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

2. Thank you for stating the following financial disclosure: 

"Funding

This work was supported by Strategic Science Investment Fund (SSIF), AgResearch Ltd., New Zealand."

Please state what role the funders took in the study.  If the funders had no role, please state: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript." 

If this statement is not correct you must amend it as needed. 

Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf.

3. In your Data Availability statement, you have not specified where the minimal data set underlying the results described in your manuscript can be found. PLOS defines a study's minimal data set as the underlying data used to reach the conclusions drawn in the manuscript and any additional data required to replicate the reported study findings in their entirety. All PLOS journals require that the minimal data set be made fully available. For more information about our data policy, please see http://journals.plos.org/plosone/s/data-availability.

Upon re-submitting your revised manuscript, please upload your study’s minimal underlying data set as either Supporting Information files or to a stable, public repository and include the relevant URLs, DOIs, or accession numbers within your revised cover letter. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. Any potentially identifying patient information must be fully anonymized.

Important: If there are ethical or legal restrictions to sharing your data publicly, please explain these restrictions in detail. Please see our guidelines for more information on what we consider unacceptable restrictions to publicly sharing data: http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. Note that it is not acceptable for the authors to be the sole named individuals responsible for ensuring data access.

We will update your Data Availability statement to reflect the information you provide in your cover letter.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: This is an interesting paper with potentially significant findings.

However, there are multiple important points that require clarification:

1. Which HICA was used? Was it DL-HICA?

2. What was the pH of HICA solution and the final pH during the incubations?

HICA comes in two isoforms of which DL is the more active one. It only stays in DL isoform in low pH and in more neutral conditions it becomes a racemic solution.

Please clarify in the methods and discuss in the discussion if relevant.

There is no mention of what controls were used. Looking at Figure 1 it looks like there was a non-HICA containing control.

1. What was the pH of this non-HICA containing control?

2. What other controls were used in the various experiments?

3. Please clarify for all experiments what controls were used.

The Discussion is far too long and starts off as a second introduction. Please focus on discussing your own results here. Also, please discuss the limitations of the study and the methods used. Please do not speculate beyond your results.

Reviewer #2: This study evaluates antibacterial effect of a natural compound 2-hydroxyisocaproic acid and shows new interesting perspectives of possible antibacterial mode of action this agent. The mode of action has been studied with several different methods. There are several points in the study, which should be considered, and corrected or explained.

1. Title and the text: Is it better to use antibacterial term together with or instead of antimicrobial, because it could be more precise in this context?

2. Materials and methods: Row 107 "our laboratory culture collection." Which is the name of the organization?

3. Materials and methods: The testings of antimicrobial susceptibility of bacteria are told to be performed with three replicates, but obviously not repeated in this study. Therefore, the degree of evidence should be considered. Antibacterial efficacy of 2-hydroxyisocaproic acid has been reported earlier against Escherichia coli, Pseudomonas aerunginosa and Staphylococcus aureus, but there are several bacterial species included in this study, which are tested for the first time. Is the evidence of their susceptibility for HICA sufficient? Repetition of the efficacy testings of bacterial species is recommended.

4. Materials and methods: What is the pH-value, in which the experiments have been performed? This might have an influence on antibacterial effect.

5. Materials and methods: Were the final test concentrations, for which the bacterial strains and isolates were exposed 0,5-32mg/mL or lower after adding 50 microliter of bacterial suspension and 50 microliter of MHB to 100 microliter of test solutions? This should be explained more clearly in the text, and corrected to the results, if needed.

6. Materials and methods: In the row 125: "or water (untreated control)". Isn't this sterile water?

7. Materials and methods: Sterile water in MHB acted as a negative control in the efficacy testings. Were there used any positive control, which is known to kill the bacterial strains?

8. Materials and methods: There are multiple methods used in this study, but all bacterial strains, which are introduced in the beginning of Materials and method section are not tested in all experiments. The bacterial strains and isolates, which are tested in different experiments (range 2-14) should be clarified in the text. Because of using the terms Gram-positive and negative bacteria readers may suppose that all 14 strains and isolates have been tested in all experiments.

9. Statistical analyses in the bacterial susceptibility testings are told to been done with single factor ANOVA, for which the results should be normally distributed. Three replicates per group is also the lowest number of replicates for these analyses. Is the normal distribution of the results within the groups confirmed or has this been possible?

10. Results: Row 294: "Florescence" should be corrected fluorescence.

11. Results: In the row 329 there is written: "HICA addition induced a rapid depolarisation of the cytoplasmic membrane of both Gram-positive and Gram-negative bacteria as evident by rapid increase in fluorescence intensities." However, the colors blue/red possibly shows the opposite in the Figure. This should be corrected.

12. Discussion: In the Discussion there is a risk for misinterpretation of the results. For instance, the term of Gram-positive bacteria as plural may end up to larger adaptation of the results than is meaningful. As earlier was mentioned, all bacterial strains (n=14) included in the first part of the study are not tested in the other parts of the study. The number of bacterial strains tested in them varied from 2 to 7. So, the results should be adapted only on the tested bacterial strains and isolates of each experiment, not on all Gram-positive and Gram-negative bacteria in general. For clarity, the names of tested bacterial strains and their designation codes should be written in the Discussion text. Some examples are below.

a. "Further evidence for the antimicrobial effect of HICA was provided using the bacterial cell

viability assay of several Gram-positive and Gram-negative bacteria." Comment: The exact amount of Gram-positive and Gram-negative bacterial strains should be mentioned, like three Gram-positive bacterial and four Gram-negative bacterial strains. And the bacterial strains tested should be mentioned by their names and designation codes (or by other distinctive manners).

b. "HICA disrupted the cell membrane integrity of both Gram-positive and Gram-negative bacteria (Fig 2)." Comment: Please, tell also the exact amount of tested bacterial strains (n=7?) and individualize them in this part of the study.

c. "This characteristic of NPN is used to examine the permeability of the outer membrane of Gram-negative bacteria [21]." Comment: Name exactly the bacterial strains, which were tested in this method of the study (n=4?).

d. "The effect of HICA on the cytoplasmic membrane potential of both Gram-positive and Gram-negative bacteria were examined using the membrane potential-sensitive dye 3,3'-Dipropylthiadicarbocyanine iodide [DiSC3(5)]." Comment: Please, individualize the bacterial strains, which were tested in this part of the study (n=2) for the reason mentioned earlier.

e. "In the present study, B. cereus and P. aeruginosa were selected as model microorganisms to investigate the morphological changes in Gram-positive and Gram-negative bacteria after HICA treatment." Comment: Please, individualize the exact bacterial strains, which were used in both electron microscopy methods, because there were some other strains from these species included in the study too.

13. Discussion: "sub and supra-MIC" Comment: Is this expressed in correct language? Should it be written as: below and beyond, or under and over the minimum inhibitory concentrations?

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Revision 1

We thank reviewers for reviewing our work.

Reviewer 1

1. Which HICA was used? Was it DL-HICA?

Yes, DL-HICA was used in this study. That information was added in the text under materials and methods (L 118-120)

2. What was the pH of HICA solution and the final pH during the incubations?

HICA comes in two isoforms of which DL is the more active one. It only stays in DL isoform in low pH and in more neutral conditions it becomes a racemic solution.

Please clarify in the methods and discuss in the discussion if relevant.

Information about HICA isoform used in this study and the pH during the incubation was added in the text (L 118-120) and (L 136, L 151, L546, L548), respectively. DL-HICA was used in our study and other studies elsewhere that reported antimicrobial activity. But there is no information in the literature about the relationship between HICA’s antimicrobial activity and its isoform. So, we have not further commented on it.

3. There is no mention of what controls were used. Looking at Figure 1 it looks like there was a non-HICA containing control.

1. What was the pH of this non-HICA containing control?

2. What other controls were used in the various experiments?

3. Please clarify for all experiments what controls were used.

Non-HICA control used was growth medium + cells + sterile water (pH ≈ 7.2), included in the text (L546)

All the experiments were performed with relevant untreated controls and the HICA-treated groups were compared against respective untreated controls. This information was included in all relevant methodologies.

4. The Discussion is far too long and starts off as a second introduction. Please focus on discussing your own results here. Also, please discuss the limitations of the study and the methods used. Please do not speculate beyond your results

Reduced the amount of introductory and methodology information in the discussion section and focused more on discussing results and limitations.

Reviewer 2

1. Title and the text: Is it better to use antibacterial term together with or instead of antimicrobial, because it could be more precise in this context?

Changed the term ‘antimicrobial’ to ‘antibacterial’ in the title and the other places in the text as suggested

2. Materials and methods: Row 107 "our laboratory culture collection." Which is the name of the organization?

Included in the text - Food System Integrity Team, AgResearch Ltd., New Zealand (L105-106)

3. Materials and methods: The testing of antimicrobial susceptibility of bacteria are told to be performed with three replicates, but obviously not repeated in this study.

Therefore, the degree of evidence should be considered. Antibacterial efficacy of 2-hydroxyisocaproic acid has been reported earlier against Escherichia coli, Pseudomonas aeruginosa and Staphylococcus aureus, but there are several bacterial species included in this study, which are tested for the first time. Is the evidence of their susceptibility for HICA sufficient? Repetition of the efficacy testings of bacterial species is recommended.

The MIC and MBC values in the Table 1 were obtained by conducting MIC and MBC assays with three replicates of HICA with a dilution series consisting final concentrations, 32 mg/mL, 16 mg/mL, 8 mg/mL, 4 mg/mL, 2 mg/mL, 1 mg/mL, 0.5 mg/mL and 0.25 mg/mL. The results of all three replicates were consistent showing the same minimum inhibitory concentration and minimum bactericidal concentrations. For instance, all three replicates of HICA showed that ≥ 0.5 mg/mL HICA concentrations could inhibit the growth of Shewanella putrefaciens SM26 completely in the MHB (no OD change) and ≥ 1 mg/mL HICA concentrations resulted no colonies on SBA plates. Therefore, minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) of HICA against Shewanella putrefaciens SM26 were 0.5 mg/mL and 1 mg/mL respectively. Now, the use of three replicates of HICA to assess the MIC and MBC against all test bacteria is included in the method section (L141-143 and L258). Supplementary file_S1(Table S1).

4. Materials and methods: What is the pH-value, in which the experiments have been performed? This might have an influence on antibacterial effect.

Different pH values have been documented in the text, including discussion, (L 136, L 151, L546, L548) also, (L544 – L550).

5. Materials and methods: Were the final test concentrations, for which the bacterial strains and isolates were exposed 0,5-32mg/mL or lower after adding 50 microliter of bacterial suspension and 50 microliter of MHB to 100 microliter of test solutions? This should be explained more clearly in the text, and corrected to the results, if needed.

Included the working concentrations of HICA in the text to clarify the final HICA concentrations after two-fold dilution in the assay with medium and the cells. (L127-132).

6. Materials and methods: In the row 125: "or water (untreated control)". Isn't this sterile water?

Yes, it is sterile water. Included in the text (L132)

7. Materials and methods: Sterile water in MHB acted as a negative control in the efficacy testing. Were there used any positive control, which is known to kill the bacterial strains?

No positive control was used in the efficacy assay as there was no intention of comparing the antimicrobial efficacy of HICA to any known compound. Purpose was to determine the MIC and MBC values.

8. Materials and methods: There are multiple methods used in this study, but all bacterial strains, which are introduced in the beginning of Materials and method section are not tested in all experiments. The bacterial strains and isolates, which are tested in different experiments (range 2-14) should be clarified in the text. Because of using the terms Gram-positive and negative bacteria readers may suppose that all 14 strains and isolates have been tested in all experiments.

Included bacteria names in the methodologies

9. Statistical analyses in the bacterial susceptibility testings are told to been done with single factor ANOVA, for which the results should be normally distributed. Three replicates per group is also the lowest number of replicates for these analyses. Is the normal distribution of the results within the groups confirmed or has this been possible?

Three replicates have been employed and accepted as the minimum number of replicates to determine the statistical significance between groups using one-way ANOVA [1]. Normal distribution of the data within the groups was confirmed by Shapiro-Wilk test of normality before performing ANOVA.

10. Results: Row 294: "Florescence" should be corrected fluorescence.

Corrected (L315)

11. Results: In the row 329 there is written: "HICA addition induced a rapid depolarisation of the cytoplasmic membrane of both Gram-positive and Gram-negative bacteria as evident by rapid increase in fluorescence intensities." However, the colors blue/red possibly shows the opposite in the Figure. This should be corrected.

Corrected the colors in the figure 4 caption (L359-360)

12. Discussion: In the Discussion there is a risk for misinterpretation of the results. For instance, the term of Gram-positive bacteria as plural may end up to larger adaptation of the results than is meaningful. As earlier was mentioned, all bacterial strains (n=14) included in the first part of the study are not tested in the other parts of the study. The number of bacterial strains tested in them varied from 2 to 7. So, the results should be adapted only on the tested bacterial strains and isolates of each experiment, not on all Gram-positive and Gram-negative bacteria in general.

For clarity, the names of tested bacterial strains and their designation codes should be written in the discussion text. Some examples are below.

a. "Further evidence for the antimicrobial effect of HICA was provided using the bacterial cell

viability assay of several Gram-positive and Gram-negative bacteria." Comment: The exact amount of Gram-positive and Gram-negative bacterial strains should be mentioned, like three Gram-positive bacterial and four Gram-negative bacterial strains. And the bacterial strains tested should be mentioned by their names and designation codes (or by other distinctive manners).

Included the number of bacteria and their names in the text (L450-L453)

b. "HICA disrupted the cell membrane integrity of both Gram-positive and Gram-negative bacteria (Fig 2)." Comment: Please, tell also the exact amount of tested bacterial strains (n=7?) and individualize them in this part of the study.

Included the number of bacteria and their names in the text (L467-472)

c. "This characteristic of NPN is used to examine the permeability of the outer membrane of Gram-negative bacteria [21]." Comment: Name exactly the bacterial strains, which were tested in this method of the study (n=4?).

Included the number of Gram-negative bacteria and their names in the text (L482-483)

d. "The effect of HICA on the cytoplasmic membrane potential of both Gram-positive and Gram-negative bacteria were examined using the membrane potential-sensitive dye 3,3'-Dipropylthiadicarbocyanine iodide [DiSC3(5)]." Comment: Please, individualize the bacterial strains, which were tested in this part of the study (n=2) for the reason mentioned earlier.

Included the number of bacteria and their names in the text (L502-505)

e. "In the present study, B. cereus and P. aeruginosa were selected as model microorganisms to investigate the morphological changes in Gram-positive and Gram-negative bacteria after HICA treatment." Comment: Please, individualize the exact bacterial strains, which were used in both electron microscopy methods, because there were some other strains from these species included in the study too.

Included strain names in the text (L524)

13. Discussion: "sub and supra-MIC" Comment: Is this expressed in correct language? Should it be written as: below and beyond, or under and over the minimum inhibitory concentrations?

The terms “sub-MIC” and “supra-MIC” to describe lower and higher concentrations of MIC of a particular antimicrobial compound are used in previous antimicrobial research [2-4].

References

[1] Liu X, Zhang M, Meng X, He X, Zhao W, Liu Y, et al. Inactivation and membrane damage mechanism of slightly acidic electrolyzed water on Pseudomonas deceptionensis CM2. Molecules (Basel, Switzerland). 2021;26:1012.

[2] Juma A, Lemoine P, Simpson ABJ, Murray J, O’Hagan BMG, Naughton PJ, et al. Microscopic investigation of the combined use of antibiotics and biosurfactants on methicillin resistant Staphylococcus aureus. Frontiers in Microbiology. 2020;11.

[3] Odenholt I, Holm SE, Cars O. Effects of supra- and sub-MIC benzylpenicillin concentrations on group A β-haemolytic streptococci during the postantibiotic phase in vivo. Journal of Antimicrobial Chemotherapy. 1990;26:193-201.

[4] Odenholt-Tornqvist I, Löwdin E, Cars O. Pharmacodynamic effects of subinhibitory concentrations of beta-lactam antibiotics in vitro. Antimicrobial Agents and Chemotherapy. 1991;35:1834-9.

Attachments
Attachment
Submitted filename: Response to reviewers Final.docx
Decision Letter - Guadalupe Virginia Nevárez-Moorillón, Editor

PONE-D-21-34303R1Antibacterial efficacy and possible mechanism of action of 2-hydroxyisocaproic acid (HICA)PLOS ONE

Dear Dr. Gupta,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please consider mainly the first suggestion of the reviewer, that I consider will improve the document.  Please submit your revised manuscript by Apr 03 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.
  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.
  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Guadalupe Virginia Nevárez-Moorillón, Ph.D.

Academic Editor

PLOS ONE

Journal Requirements:

Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The manuscript has improved but there are still a number of outstanding issues:

1. The lack of pH controls needs to be at least discussed. Ideally the experiments would be repeated with them but an insightful discussion may suffice. It is well known that some microbes tolerate low pH poorly whereas others benefit from it. It would be important to know if the effects seen are actually due to the antimicrobial effect of HICA or the low pH (as low as 3 as stated in the methods).

2.I note that the word antimicrobial has been changed to antibacterial throughout. I presume this is due to comments made by the reviewers. The change is correct in some instances but in others not. HICA does have antifungal activity (see reference below) and when described more broadly antimicrobial activity is more appropriate than antibacterial activity. The authors need to go through each of those changes and check what exactly they mean and which of the two words is more appropriate.

Sakko M, Moore C, Novak-Frazer L, Rautemaa V, Sorsa T, Hietala P, Järvinen A, Bowyer P, Tjäderhane L, Rautemaa R.2-hydroxyisocaproic acid is fungicidal for Candida and Aspergillus species. Mycoses. 2014 Apr;57(4):214-21. doi: 10.1111/myc.12145. Epub 2013 Oct 11.

Nieminen MT, Novak-Frazer L, Rautemaa V, Rajendran R, Sorsa T, Ramage G, Bowyer P, Rautemaa R. A novel antifungal is active against Candida albicans biofilms and inhibits mutagenic acetaldehyde production in vitro. PLoS One. 2014 May 27;9(5):e97864. doi: 10.1371/journal.pone.0097864.

A recent publication on HICA activity against anaerobic bacteria is also relevant for this paper.

Sakko M, Rautemaa-Richardson R, Sakko S, Richardson M, Sorsa T. Antibacterial Activity of 2-Hydroxyisocaproic Acid (HICA) Against Obligate Anaerobic Bacterial Species Associated With Periodontal Disease. Microbiol Insights. 2021 Oct 21

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Revision 2

We thank reviewers for reviewing our work.

1. The lack of pH controls needs to be at least discussed. Ideally the experiments would be repeated with them, but an insightful discussion may suffice. It is well known that some microbes tolerate low pH poorly whereas others benefit from it. It would be important to know if the effects seen are actually due to the antimicrobial effect of HICA or the low pH (as low as 3 as stated in the methods).

This has been identified and discussed in the discussion segment. The lack of information on clarifying the relationship between low pH of HICA and its antimicrobial activities in the current work and the need for future studies to fill that knowledge have been identified and discussed. Please see lines 547 to 562

2. I note that the word antimicrobial has been changed to antibacterial throughout. I presume this is due to comments made by the reviewers. The change is correct in some instances but in others not. HICA does have antifungal activity (see reference below) and when described more broadly antimicrobial activity is more appropriate than antibacterial activity. The authors need to go through each of those changes and check what exactly they mean and which of the two words is more appropriate.

We thoroughly checked the manuscript and changed the terminology accordingly.

Attachments
Attachment
Submitted filename: Response to reviewers 2.docx
Decision Letter - Guadalupe Virginia Nevárez-Moorillón, Editor

Antibacterial efficacy and possible mechanism of action of 2-hydroxyisocaproic acid (HICA)

PONE-D-21-34303R2

Dear Dr. Gupta,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Guadalupe Virginia Nevárez-Moorillón, Ph.D.

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Formally Accepted
Acceptance Letter - Guadalupe Virginia Nevárez-Moorillón, Editor

PONE-D-21-34303R2

Antibacterial efficacy and possible mechanism of action of 2-hydroxyisocaproic acid (HICA)

Dear Dr. Gupta:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Guadalupe Virginia Nevárez-Moorillón

Academic Editor

PLOS ONE

Open letter on the publication of peer review reports

PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.

We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.

Learn more at ASAPbio .