Peer Review History
| Original SubmissionDecember 2, 2021 |
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PONE-D-21-38179Analysis of the impact of coronavirus disease 19 on hospitalization rates for chronic non-communicable diseases in BrazilPLOS ONE Dear Dr. Guimarães, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Your findings are of interest but there are important areas for improvement, as clearly indicated by the reviewers.. Please address all their comments carefully. Reviewer 1 has raised several important methodologic issues, including the potential use of interrupted time series analysis. Reviewer 2 has identified key issues with respect to interpretation of your findings. In particular, and as they pointed out, reduced admissions for NCDs reflect not only social distancing measures, and reluctance to seek care; they also can reflect diminished availability of hospital beds for admission of patients for NCDs without COVID, if most beds are devoted to COVID patients. Their point about NCD patients being admitted with COVID is also important--a person who requires hospitalization for congestive heart failure and has COVID may "officially" be counted as a COVID admission, but they have congestive heart failure (potentially worsened/precipitated by COVID). It would also be essential to articulate clearly what your analysis adds to existing knowledge. Please submit your revised manuscript by Feb 20 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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If you are unable to obtain permission from the original copyright holder to publish these figures under the CC BY 4.0 license or if the copyright holder’s requirements are incompatible with the CC BY 4.0 license, please either i) remove the figure or ii) supply a replacement figure that complies with the CC BY 4.0 license. Please check copyright information on all replacement figures and update the figure caption with source information. If applicable, please specify in the figure caption text when a figure is similar but not identical to the original image and is therefore for illustrative purposes only. The following resources for replacing copyrighted map figures may be helpful: USGS National Map Viewer (public domain): http://viewer.nationalmap.gov/viewer/ The Gateway to Astronaut Photography of Earth (public domain): http://eol.jsc.nasa.gov/sseop/clickmap/ Maps at the CIA (public domain): https://www.cia.gov/library/publications/the-world-factbook/index.html and https://www.cia.gov/library/publications/cia-maps-publications/index.html NASA Earth Observatory (public domain): http://earthobservatory.nasa.gov/ Landsat: http://landsat.visibleearth.nasa.gov/ USGS EROS (Earth Resources Observatory and Science (EROS) Center) (public domain): http://eros.usgs.gov/# Natural Earth (public domain): http://www.naturalearthdata.com/ [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The reviewer thanks the authors for submission of this manuscript, entitled “Analysis of the impact of coronavirus disease 19 on hospitalization rates for chronic non-communicable diseases in Brazil”, which compares hospitalization rates pre- and during-pandemic via Poisson regression. Below are a few points to consider to improve the manuscript: Abstract: • It would be helpful for the reader if the pre- vs during-pandemic period (as relevant to the Brazilian setting) were defined in the abstract • Lines 47-48, that these declines in hospitalizations were due to “social distancing measures” is somewhat vague - might be clearer to say due to increased barriers to care during the pandemic, transport restrictions during lockdowns, etc. • Include confidence intervals for estimates in abstract. Background: • Line 51: “third leading country” - this is a bit unclear - 3rd highest number of cases? Deaths? Per capita cases / deaths? Methods: • Line 168: definition of start of pandemic period: In the background, it was stated that restrictions were imposed following the declaration of the pandemic on 11 March 2020 - if this is the case, it’s unclear to me why the pandemic period in the analysis is then defined as starting on 1 March 2020. Were significant restrictions imposed in some areas in Brazil prior to March 11? If so, this should be clarified in the background section. If not, then it might be better to define the pandemic period as starting on March 11 rather than March 1, to align with when restrictions were actually imposed and thus began to represent barriers to care. (Otherwise, if defining the start of the pandemic period prior to imposition of actual restrictions, you may bias your estimate towards the null). • Consider alternative methods that may be more suitable for answering this question - when analysing the impact of large-scale population-level events (i.e. a pandemic, a country-wide health policy change, etc), interrupted time series (ITS) analysis can be a useful method, as it adjusts for secular trends (other trends in the outcome that are unrelated to the event/intervention/pandemic), by fitting 2 separate regression lines to capture the deviation of the post-intervention data from its pre-intervention trend. This would allow you to isolate the effect of the pandemic on hospitalization rates from other health systems level factors that may have changed over time and affected hospitalization rates. ITS is not always an appropriate method as it requires large sample sizes over multiple time points, however, you seem to have an adequate amount of data and number of time points to make this feasible, so it is worth exploring. Otherwise, you could briefly state why ITS has not been used, if you feel it is not appropriate. • Accounting for missing data: the issue of missing data only comes up in the discussion, where a high proportion of missing data is mentioned. It should be made clearer what proportion of data are missing, and on which variables, and methods to account for missing data should be considered (see comments under “discussion”). • Your current analysis is not really a time series, as you are not looking at the outcome over a series of different time points, but rather, you are grouping time into two categories (pre- vs during pandemic). So, if you choose to keep your initial analysis, I would recommend not referring to it as a time series. Results: • Table 1: Include confidence intervals for % change (also applies to subsequent tables) Discussion: • Could add brief comment on assumptions of Poisson and that they have been met (otherwise alternatives e.g. Negative binomial may be more suitable) • Line 449: in the section discussing that private sector hospitalizations were not included, it would be good to add more detail on in what ways private vs. public sector patients may differ from one another (if known) (e.g. differences in socioeconomic status?), to get more insight into how this might bias the estimate • Missing data: a “high incidence” of missing data for “many variables” is mentioned - this is unclear - how much missing data (%)? And on how many variables? Depending on the amount and pattern of missingness, different methods can be applied to account for this - e.g. multiple imputation, inverse probability weighting, etc. Reviewer #2: Thank you for submitting your manuscript, the paper is very well written and structured. You conducted an ecological time series study having had access to Brazilian national health service records for admissions prior and during the pandemic. You utilized ICD-10 coding and grouped admissions by NCD. In summary you report that admissions for NCDs across Brazil fell during the surge of COVID-19 admissions and this was due to implementation of social distancing measures. The phenomenon of reduced NCD admissions, myocardial infarctions during the COVID-19 pandemic is well reported in the literature. Your study while giving large numbers and a nationwide view however lacks granularity beyond the statement of number of admissions. In my opinion several important points are missing like the surge in COVID-19 admissions involved patients also with comorbidities of the NCD groups and this represents a confounder to your data and analysis. Also importantly the pressure on the healthcare system meant there were no more beds for non COVID cases and if there were the NCD patients would be at higher risk of getting the infection and dying (saying patients with NCDs had unequal access is debatable if they are more vulnerable?). Healthcare workers were also affected by COVID reducing healthcare capacity further. I think there are more sides to the story that social distance measures were the cause of reduction in NCD admissions, it is not only the fear but also the lockdown how can patients travel to hospital if there is no transport etc.? The limitations you give to your study need a little more work as they are incomplete, while you discuss the lack of private hospital data there are several omissions in your data i.e. knowing the proportion of NCD patients prior and during (through comorbidities) COVID-19. NCDs are not only managed by admissions to hospital but also by primary care. Overall the study appears to be too narrow and the conclusions not necessarily substantiated, when it is likely there is a bigger picture, consider revising the discussion and broadening. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Lena Faust Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Analysis of the impact of coronavirus disease 19 on hospitalization rates for chronic non-communicable diseases in Brazil PONE-D-21-38179R1 Dear Dr. Guimarães, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Kevin Schwartzman Academic Editor PLOS ONE Additional Editor Comments (optional): None Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The reviewer thanks the authors for making the effort to address comments and explain/justify their methodological choices. The reviewer feels comments were adequately addressed. Reviewer #2: Thank you for revising your manuscript, reviewing the limitations and broadening the discussion. I find the paper has improved with a more balanced discussion. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No |
| Formally Accepted |
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PONE-D-21-38179R1 Analysis of the impact of coronavirus disease 19 on hospitalization rates for chronic non-communicable diseases in Brazil Dear Dr. Guimarães: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Kevin Schwartzman Academic Editor PLOS ONE |
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