Peer Review History
| Original SubmissionJuly 9, 2021 |
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PONE-D-21-22413 Seasonality of birth in the Baka Pygmies, environmental factors and climatic changes PLOS ONE Dear Dr. Ramirez Rozzi, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== ACADEMIC EDITOR: Thank you for submitting your work to Plos One. We now have two complete reviews, and both reviewers find that the manuscript has the potential to meet Plos One criteria for publication. However, both reviewers raise questions about the statistical analysis and the availability of data, as well as code for reproducing the analysis. These questions must be addressed prior to acceptance for publication. In particular, the authors must provide access to the data and code used to run the analysis, preferably as electronic files, to improve the ability of reviewers and readers to evaluate the data and use the remarkable data presented by this study. I realize that tables are presented in the word document SI. However a more analysis friendly format would be helpful. Further, the statistical analysis requires some more justification and attention to the interpretation of the results in terms of effect size. I would also note that mutual information is often a more appropriate metric for assessing the association between a climate and a population variable in a time-series when such series are short and noisy. See, for example, Cazelles B (2004) Symbolic dynamics for identifying similarity between rhythms of ecological time series. Ecol Lett 7:755–763. R1 and R2 provide additional comments that may improve the quality of the manuscript. For your reference, files are attached with R1 and R2 comments. ============================== Please submit your revised manuscript by Oct 09 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Jacob Freeman Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please complete the following questions designed to promote ethical global research practices. The information requested in this section should also be included in the Methods section of your manuscript. Did you obtain permissions from a local agency (e.g. government office, ethics committee or similar) to conduct this study? Provide details as to who granted local permissions and/or consent. Refer to any individuals involved by their role or title but do not list their name(s). Did you obtain written informed consent from a representative of the local community or region before the research took place? Did the individuals who provided consent for this research also agree to the sharing of the data obtained, as per your Data Availability Statement? How were the aims of the research investigation, its methodology, and its anticipated outcome(s) discussed with, and agreed upon by the people/s being studied or representatives of the local community? How did you establish who speaks for the community? What aspects of the research process, including the right to exercise control over how the information and/or materials are collected, studied, and/or published, did the local community being studied have control over? How were the ethical values of the local community acknowledged, discussed, and/or incorporated into the research design? Have the findings of the research been presented or made available in an understandable format to stakeholders in the community where the study was conducted (e.g. via a presentation, summary report, copies of publications, etc.)? 3. We note that you have referenced (ie. Bewick et al. [5]) which has currently not yet been accepted for publication. Please remove this from your References and amend this to state in the body of your manuscript: (ie “Bewick et al. [Unpublished]”) as detailed online in our guide for authors http://journals.plos.org/plosone/s/submission-guidelines#loc-reference-style [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Reviewed by M. Clauss: This manuscript presents data and analyses of reproductive seasonality in a group of subsistence hunter-gatherer-farmers-labourers, the Baka Pygmies. The data is sound (but not available easily for others - if one would want to repeat the analyses, one would miss the climate data at the monthly resolution - these need to be supplied). My main concern is the narrative of the manuscript. I made ample comments on this in the attached WORD file of the manuscript and ask the authors to go through those comments. I sum up some points here. 1. The justification of the work: this is done by (i) invoking relevance for the 'threat' status of this population (due to its life style), but this thread is not taken up in the discussion, and the relevance of the knowledge for a protection or for the benefit of the population is not even mentioned any more. (ii) by claiming important links of birth seasonality with other health parameters (like longevity, neonate survival etc.) - which are then never again mentioned. This sums up like a typical narrative that claims to be relevant for certain reasons but then fails to address these issues in the discussion. For me, this is one reason why people do not trust scientists - because many scientists use cool-sounding justifications for their work but then do not keep the promise these justifications made. It would be more honest, and satisfying, to give other reasons, and to mention these 'justifications' as outlook in the discussion (e.g., saying further work could test an effect of the seasonality on health/survival). 2. The structure of the explanations: In my view, the results are very similar to reference 30 Philibert et al. 2013, but this paper is only very sporadically referred to. In the discussion (and partly in the results), the authors give reasons why one would expect a seasonal reproductive pattern in this population - but this feels like an afterthought. It would be better to outline possible reasons for reproductive seasonality in the Intro and derive predictions from that. In particular, the discussion indicates that there are 3 different possible reasons for the observed seasonality, which the data alone cannot distinguish. I would find the manuscript much more satisfying, and honest, if these predictions were outlined at the beginning, also mentioning that one cannot distinguish between them. 3. The description of the lifestyle. The Baka are called "hunter-gatherers" especially in the Abstract and Intro, and only later it is stated that they also practice some kind of subsistence agriculture, and hire out as labourers to other groups. This comes as a disappointment, after the strong claims about "hunter-gatherers". I think the complete lifestyle picture should be mentioned in the abstract, and the Intro / Methods. 4. Structuring causes for reproductive seasonality. Coming from mammals, the main cause is nutritional status and health status (this are factors basically common to all animals). In humans, there are additionally behavioural and socio-economic factors. It would be good to clearly structure these effects in the Intro, e.g. there are (i) constraints on conception or pregnancy maintenance due to nutritional status, or infectious diseases (Malaria), or effects of climate on sperm quality (ii) constraints on the frequency of mating / intercourse, due to behavioural effect of climate (discomfort), of workload (tiredness in certain seasons), of working patterns (e.g. working or hunting away from mates), cultural restrictions, and deliberate birth timing. (iii) evolutionary ingrained triggers (e.g. phototriggers) that probably play a lesser role in humans in general, but also have little effect in the tropics. In the population here, many causes for reduced conception/mating seem to co-incide in the wet seasons. 5. Mentioning the magnitude of effect. Statistical significance is a necessary condition for the relevance of a finding, but more important is the magnitude of effect. Depending on how one calculates it, we get about 10% of all births in this population being due to seasonality, as opposed to about 90% being due to non-seasonal reproduction. This is never clearly stated in the manuscript, and is not part of the discussion about the reasons. But in my interpretation, stating this clearly would emphasize that while all the mentioned effects may have some effect, they are not overriding rulers of the Baka's reproduction. If you disagree about this conclusion, you should mention it and explain why it is wrong. Not mentioning the magnitude is just strange. 6. There are several specific instances where the text seems to contradict itself in short sequence, e.g. when saying that in the dry season, the diet is more diverse, but a few sentences later is is said that it is made up of 50% of one single kind of fruit. If it is dominated by a single fruit and YET more diverse, you shoud explain this so the reader does not feel confused. Another example is to say that the lack of such studies is "surprising" and then immediately explain why this data is hard to come by. If data are hard to come by, lack of work on it is not really a surprise .... Other instances indicated in the word file. 7. I would expect to have a clearer overview over the literature in terms of 'double peaks', e.g. Philibert et al. 2013 (I did not check other human literature). 8. The finding about an effect of global warming on the reproductive seasonality says that there is an effect on the second birht peak in the year (which occurs at later dates) but not on the first. This clearly means that the distance between these two peaks is increasing (or, in other words, the distance between the second peak and the subsequent first one of the next year is decreasing). This is not mentioned, and not analyzed. In particular, this should affect discussions about the "contstant" interbirth interval and the sentence that "siblings are likely to be borne at subsequent peaks". For example, one could correlate the dates of the peaks to test whether their distance increases, or correlate that distance with the years. Maybe in years where the second peak is particularly late, the next first peak of the following year is also delayed? 9. Very generally, the manuscript makes it clear that you do distinguish between birth and conception. Nevertheless, the choice of words often is as if you claimed that there is a direct effect of something, like temperature, on birthing. It is clear this is not how you mean it, yet the words sound like it. I recommend to mend this. One good way would be to replace the term "birth seasonality" by "reproductive seasonality" in many locations. Please see the attached word file for details. My apologies for some strong criticism, but I hope this gives you an idea how your work in its present state might be regarded. sincerely marcus clauss Please refer Reviewer #2: See attached PDF. This form requires more characters for some reason, so here are some: "Sed ut perspiciatis unde omnis iste natus error sit voluptatem accusantium doloremque laudantium, totam rem aperiam, eaque ipsa quae ab illo inventore veritatis et quasi architecto beatae vitae dicta sunt explicabo. Nemo enim ipsam voluptatem quia voluptas sit aspernatur aut odit aut fugit, sed quia consequuntur magni dolores eos qui ratione voluptatem sequi nesciunt. Neque porro quisquam est, qui dolorem ipsum quia dolor sit amet, consectetur, adipisci velit, sed quia non numquam eius modi tempora incidunt ut labore et dolore magnam aliquam quaerat voluptatem. Ut enim ad minima veniam, quis nostrum exercitationem ullam corporis suscipit laboriosam, nisi ut aliquid ex ea commodi consequatur? Quis autem vel eum iure reprehenderit qui in ea voluptate velit esse quam nihil molestiae consequatur, vel illum qui dolorem eum fugiat quo voluptas nulla pariatur?" ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Marcus Clauss Reviewer #2: Yes: Edward Hagen [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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PONE-D-21-22413R1Reproductive Seasonality in the Baka Pygmies, environmental factors and climatic changesPLOS ONE Dear Dr. Ramirez Rozzi, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ACADEMIC EDITOR: This is an well done study that now meets Plos One criteria for publication. Please consider my decision of minor revision as an opportunity to finalize any small editorial changes. We do not have copy editing services, and I noticed a couple typos. Thank you for submitting your work to Plos One. Please submit your revised manuscript by Mar 11 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Jacob Freeman Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #2: I Don't Know ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #2: The authors carefully addressed all my comments. As the authors correctly point out, my one major concern was due to a coding error on my part. Minor corrections: line 100: "The rainy seasons are characterized by short periods of torrential rainfall" line 156: "Subsistence activities vary according to the seasons, ..." line 194: "This study has obtained approval from..." line 360: "This study brought several findings: ..." is awkward. Maybe "This study had several results: ..." or similar. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Reproductive Seasonality in the Baka Pygmies, environmental factors and climatic changes PONE-D-21-22413R2 Dear Dr. Ramirez Rozzi, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Jacob Freeman Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-21-22413R2 Reproductive Seasonality in the Baka Pygmies, environmental factors and climatic changes Dear Dr. Ramirez Rozzi: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Jacob Freeman Academic Editor PLOS ONE |
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