Peer Review History
| Original SubmissionApril 20, 2021 |
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PONE-D-21-13112 Individual, Community, and Structural Factors Associated with Linkage to HIV Care Among People Diagnosed with HIV in Tennessee PLOS ONE Dear Dr. Ahonkhai, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. In your response, please pay particular attention to the concerns regarding the definition of linkage being used in the paper, as well as clarification of the modeling approach and interpretation of the study findings in light of structural factors. Please submit your revised manuscript by Sep 03 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Becky L. Genberg Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. In your Methods section, please ensure that the data sources and codes used are described in adequate detail. 3. In your Data Availability statement, you have not specified where the minimal data set underlying the results described in your manuscript can be found. PLOS defines a study's minimal data set as the underlying data used to reach the conclusions drawn in the manuscript and any additional data required to replicate the reported study findings in their entirety. All PLOS journals require that the minimal data set be made fully available. 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Note that it is not acceptable for the authors to be the sole named individuals responsible for ensuring data access. We will update your Data Availability statement to reflect the information you provide in your cover letter. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Reviewer #1: Overview: This study evaluates individual and county-level predictors of linkage to HIV care following new HIV diagnosis in Tennessee over time. The manuscript addresses an important topic and adds particular value by identifying structural drivers of poor linkage and persistent racial disparities using county-level data. The paper is well written and I think makes an important contribution, though I have some concerns about the definition of linkage to care and its interpretation. My comments/suggested edits are below: Major: 1. The authors define linkage as the date that the first CD4 count or HIV viral load measurement is taken including those drawn on the same date that the HIV diagnosis was made. While this certainly could represent linkage to HIV care, particularly if the diagnosis was made in an outpatient facility that also provides chronic HIV care, it equally could represent labs that are drawn in a non-HIV care facility (e.g. emergency department or inpatient hospital) at the time the diagnosis was made. Given that this likely does not constitute true linkage, I think the authors should consider incorporating sensitivity analyses where CD4 count/viral load measures within 24 hours of diagnosis from inpatient/emergency department or other episodic/urgent care settings (e.g. blood banks) are excluded from the linkage definition. Additional more granular information about the time to linkage following diagnosis would also be helpful – how commonly was the definition of linkage met on the same day as the diagnosis and how did this differ by care setting? 2. Given the above uncertainties with the linkage definition, I suggest incorporating a second outcome of the proportion achieving viral suppression by 6 and/or 12 months after diagnosis. This measures a different process than linkage alone, however it would strengthen study findings, particularly if disparities are similar between those who are less likely to link and those less likely to attain viral suppression. Minor: 1. Line 46 – consider changing ‘performing’ to something like ‘experience worse outcomes’. The wording here implies that non-Hispanic Black individuals are to blame for ‘underperforming’ in the care cascade, whereas the authors clearly intend to shed light on racial disparities and ways that the healthcare system is underperforming for these individuals. 2. Line 54 – “US” is duplicated, remove one instance. 3. Some of the county-level factors appear to have very extreme point estimates (e.g. ‘percent experiencing food insecurity’ with RR of 4.7 million and ‘percent households with a car with RR of 0.00). Can the authors double check these results and provide some explanation for the extreme values here? Reviewer #2: The authors assessed trends and factors associated with linkage to care among TN residents diagnosed with HIV from 2012 to 2016. The article was well-written. And the incorporation of a vast number of community-level exposures is a nice addition to the literature. My comments are detailed below. Abstract. The methods and discussion in the abstract suggest you ran county-level models. However, based on the methods in the narrative, it seems you ran a county-level analysis using individual data (i.e., using individual data with county-level independent variables). Is this an ecologic analysis? Methods: In general, I think the modelling approach requires clarification. And the approach for incorporating the county-level variables requires clarification. 1. Study, setting and design. How were county-level measures assigned or merged with eHARS data? Is the variable merged to an individual based on county of diagnosis or county of residence? Is this ecologic data: do you have measure county-level linkage and merge with a county-level exposure dataset? 2. Measures. For a variable like poor mental health days, did you use the average for the county? How variable is the measure – would the median be a better metric for a county? 3. Measures. Are all of the community SES variables a percent in the county? And were you able to drill down further, say to the zipcode? 4. Individual-level analysis. What are the a priori covariates in the multivariable analysis? And how/why were they chosen? Based on the tables, I think you fit three models, one for each threshold, with the variables listed under table 2, but this could be clearer in the narrative. 5. County-level analysis. You have listed a lot of independent variables (N = 23 county level). Did you fit a model for each independent variable/exposure of interest? If not, how did you address collinearity? Current approach suggests a need to correct for a lot of multiple testing – how was this addressed? 6. County-level analysis. How were model covariates selected? And was the approach for selecting model covariates different than the approach for selecting model covariates in the individual-level analysis. If so, why? Discussion. My primary concern with this discussion is that you’ve zeroed in on the significant findings and given very little consideration to your mostly null county-level associations. Usually, I think that’s fine, but in this case, I worry a reader may consider it fishing for a county-level association. Is it possible that the county-level variables are measured at too wide of a geographic level, e.g., would a zip-code level exposure be better? 1. The inpatient finding seems artifactual, given persons diagnosed while at an inpatient facility are admitted / on-site. I might re-frame this to look at outpatient as your reference. It seems more actionable to know if the health department or correctional facilities perform as well as outpatient facilities (table 2 suggests they perform worse). 2. Why declining linkage by 2016? What was happening or stopped happening – any TN DOH initiatives? 3. Minor / editorial, but I would suggest using a word other than “incited” to highlight the increase in discussions about racial disparities (discussion, paragraph 2). Is it possible to cite HIV literature on structural determinants versus COVID? 4. The structural racism angle/paragraph requires additional work. Your paper is about individual and community exposures. How do you tie them to structural racism (as a root cause)? And largely, your community level measures had a null association with linkage. Does this support your theory of structural racism as a root cause? Do you consider these county measures proxies for structural racism? 5. Limitations. I would add multiple testing. Are county level variables too broad of an exposure? ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-21-13112R1Individual, Community, and Structural Factors Associated with Linkage to HIV Care Among People Diagnosed with HIV in TennesseePLOS ONE Dear Dr. Ahonkhai, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Mar 03 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Natalie J. Shook Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: No ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Minor clarifications/comments: 1. Thank you to the authors for this revised manuscript. I agree with the updated definition of linkage to care, though the text describing the linkage definition could use slight clarification. Can the authors please add more specificity to what is meant by “the first CD4 or HIV-1 RNA test result… after diagnosis”? (line 77-78). I presume you included any CD4/viral load that was collected at least 1 day after the diagnosis – if this is correct, please revise to state “after the date of diagnosis”. 2. I disagree with the statement in the discussion that “increases in teen birth rate were associated with a strong, but statistically significant increase in linkage to HIV care.” I suggest changing strong to “small”, given that the aRR is 1.02 for the association between this teen pregnancy and linkage to care. Please correct the following omissions/typographical errors and re-run spell check throughout. 1. aRR for poor mental health days in the abstract is not updated with the new analysis – please check this 2. Line 212: I believe emergency room/department should be grouped with inpatient facility (as it is in Table 2). I believe “outpatient facility or emergency room” is an error here – please revise. 3. Line 253: remove inserted text “facilities ranged from 43% to” 4. Line 277: remove comma after “In addition” 5. Line 328: ‘geographic’ is misspelled Reviewer #2: Revised TN Linkage Study The authors assessed trends and individual and county-level factors associated with individual linkage to HIV care in TN. The authors did a nice job addressing previous comments. I appreciate the additional clarification in the methods/discussion related to the modelling approach and limitations. I enjoyed reading and applaud the authors for looking at so many social determinants. I have minor comments below. Abstract/Introduction. No comment. Methods. No comment. Results. 1) Minor. How do you interpret the teen birth rate finding? Is this a positive association: increasing teen birth rate is associated with increasing linkage to care? If so, do you think this is the result of confounding? I see this is clarified in the discussion narrative. But may want a sentence in results. Discussion. 1) Minor. The authors say, in the discussion and abstract, that racial disparities persisted even when adjusting for county-level social determinants of health. However, the modelling approach in the methods (and in Table 2) doesn’t appear to adjust for structural factors, just individual factors… “adjusting for a priori selected individual level covariates in multivariable analysis that were available in the surveillance data and known to be associated with the outcome of interest, including year of and age at diagnosis, sex, race/ethnicity and HIV transmission risk factor.” Does the individual model adjust for county-level social determinants? If so, please add. 2) Minor – line 328, don’t follow the euphemism ‘paints a picture’. I think you’re trying to say that segregation is correlated with geographic factors? Was it specifically correlated with poor mental health and therefore correlated with poor linkage? The point you’re trying to make about segregation is poorly constructed. Suggest revising. 3) Minor. Multiple testing is not specified in the limitations, although the authors suggest it was included. Imagine this was an oversight. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Individual, Community, and Structural Factors Associated with Linkage to HIV Care Among People Diagnosed with HIV in Tennessee PONE-D-21-13112R2 Dear Dr. Ahonkhai, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Natalie J. Shook Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-21-13112R2 Individual, Community, and Structural Factors Associated with Linkage to HIV Care Among People Diagnosed with HIV in Tennessee Dear Dr. Ahonkhai: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Natalie J. Shook Academic Editor PLOS ONE |
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