Peer Review History
| Original SubmissionOctober 1, 2021 |
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PONE-D-21-31577Emission factors for Vietnamese beef cattle manure sun-drying and the effects of drought stress on manure microbial communityPLOS ONE Dear Dr. Maeda, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Dec 19 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: General: It would seem the current emission factors estimates are grossly overestimating GHG emission from beef farms in Vietnam, thereby supporting the need for this research. My primary concern is very small number of experimental units for this study. The survey reached only 20 producers out of an estimated 580,000 (5.8 million cattle with average herd size of 10 cattle). And the emission studies were conducted on two runs with two replicates each (N=4). I would suggest additional replicates under different environmental conditions (rainy vs. dry season, hot vs colder, etc) to fully be able to conclude that the current emission factors need to be replaced. Specific comments are included on attachment. Reviewer #2: This is a very well written manuscript describing two manure drying studies focusing primarily on CH4 and N2O emissions and the changes in microbial populations during manure drying (predominant method in a Southern Vietnam province). Methods and conclusions are appropriate. My primary concerns are: 1. the limited degree of replication, and 2. the limited scope of the emission data (in the context of the larger manure system). I feel that both of these can easily be addressed by including a little extra text in the manuscript. This is a great initial investigation worthy of publication. Limited degree of replication--only two runs were conducted with multiple sampling of each experimental unit. From my read of the manuscript (and figure/table legends), it appears that gas emissions were measured twice on each tarp on sampling dates and that 4 samples were collected on those dates. This seems to be a split sample, each repeatedly measured for gases, and each sample was sampled at two locations (2 x 2 = 4 total manure samples). Take a few sentences in the experimental description to clarify how you set up the experiments and the number of sites sampled for both gases and manure. Please include the length of the drying and that daily sampling was done for 1 week. Also in the microbiology section, what does the 'manure sample (line 155) represent? Is it a composite from all four locations? Emission data scope--really this is some initial data into gas emissions from drying manure over 1 week. Really how representative is this by the farmers? Do they rake daily and always cover with a tarp? What happens if it gets rained on? What happens if they dry it for two weeks? This is a very narrow set of conditions investigated. You should really point this out in the final discussion paragraph and build a case for repeating this study with a range of potential conditions that farmers may encounter and management choices. Also, is the fresh manure removed daily? I think CH4 degassing from fresh manure (even over a few hours) would be substantial. This is good initial data that should be supplemented with additional studies. Make a good case for this in the paper. Specific comments: Title--'drought stress' by microbes is not a very good term. There is a rich body of work looking at drought stress, which is a prolonged soil drying and its effects on plants. I think 'effects of manure drying on the microbial community' is a better phrase for the title. L 148 'measured by colorimetric method' L 107 Is urine separation by sloping concrete floor typical of farmers in Southern Vietnam? This may explain your low N2O emissions if you remove easily oxidized N from the manure stream. L 188 'Quantitative PCR' L 214 A very high forage diet! Is this typical for cattle in S. Vietnam? Does the diet change as resources change? Might be good to explore diet effects on emissions (or talk about that for future work). L228 'losses explained by sampling? I don't think that is likely. You are missing both CO2 emissions and potentially leachate losses. Also NH3 loss can be substantial (but is lower for high forage diets). Maybe just characterize 'Sampling Losses' as 'Other' and then mention CO2 emissions and NH3 emissions and potential leachate losses (or other sources). L 250 - same comment at L228 L 301 'TS), counter to CH4 emission results.' L 325 YES! bring out that this is initial data for a single province. Need to build on this study to study manure handling in other areas. L 346 Reign in how broadly you apply your results--'at least for a province of Southern Vietnam.' L 390 to 392 I don't think your two manure drying runs is enough evidence to revise an IPCC factor. Your data is great justification for further work to determine if the factor is an overestimation. You also don't look at the whole manure management component. When applied to soils for fertilizer, you could have a very large gas efflux as new C is degraded in the cropping systems. L 404 'effect of drying stress on' Avoid the use of 'drought' and use 'drying' instead ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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Emission factors for Vietnamese beef cattle manure sun-drying and the effects of drying on manure microbial community PONE-D-21-31577R1 Dear Dr. Maeda, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, James E. Wells, PhD Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: (No Response) ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #2: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No |
| Formally Accepted |
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PONE-D-21-31577R1 Emission factors for Vietnamese beef cattle manure sun-drying and the effects of drying on manure microbial community Dear Dr. Maeda: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. James E. Wells Academic Editor PLOS ONE |
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