Peer Review History
| Original SubmissionJuly 27, 2021 |
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PONE-D-21-24371Habitat use by female desert tortoises suggests tradeoffs between resource use and risk avoidancePLOS ONE Dear Dr. Nafus, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== 1. You need to better frame the tests of the tradeoff hypothesis in the introduction/methods.2. The discussion should be revised to more explicitly discuss the evidence for and against this hypothesis.3. You need to discuss some alternative explanations for the mortality difference result.4. You need to tune down the language in the discussion, especially in the final few sentences, which currently give the impression that your data strongly support the behavioral tradeoff. ============================== Please submit your revised manuscript by Oct 30 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Currently, your Funding Statement reads as follows: “National Science Foundation Graduate Research Fellowship Program under Grant No. DGE-1148897 (MGN) California Energy Commission’s Public Interest Energy Research (PIER) Program under Agreement # 500-10-020 (BTD) USDA National Institute of Food and Agriculture, Hatch project CA-D-WFB-2097-H (BTD) Department of Energy under Award Number DE-FC09-07SR22506 (TDT, KAB) The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.” Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 3. We note that you have stated that you will provide repository information for your data at acceptance. Should your manuscript be accepted for publication, we will hold it until you provide the relevant accession numbers or DOIs necessary to access your data. 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Please upload a copy of Supporting Information Table S1 which you refer to in your text on page 11. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: No ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: In this nice study of G. agassizii comparing two common desert habitat types, Nafus and coauthors provide good evidence of interesting differences in body size, forage availability and burrow site selection. They also quantify survival and above-ground activity as measures of risk-taking behavior. The intro and discussion incorporate appropriate literature and do a good job of placing the study in context. This study is a valuable contribution, but I think the paper could frame the tests of the tradeoff hypothesis more clearly in the introduction/methods, and I have reservations that that they have actually demonstrated differences in risk-taking behavior between the habitat types. The discussion should be revised to more explicitly discuss the presented evidence for (and against) this hypothesis, and discuss alternative explanations for the mortality difference result. The language in the discussion, especially the final few sentences, might make a reader skimming this paper think the evidence supporting a behavioral tradeoff is much more substantial than it is in actuality. By making the ambiguities more transparent in the discussion, and framing the tests more clearly in the intro, the authors can easily make this study acceptable for publication. Major points: Stating predictions and explaining tests of hypothesis The idea that risk taking behavior should trade off with forage availability or nutritional state is clearly explained in the intro, and discussed theoretically at length in the discussion. However, this central pattern is only tangentially addressed in the specific context of the methods and results, and the pertinent results are barely explicitly discussed in the discussion. What exactly do you predict in your results from this theoretical tradeoff? What test was performed to demonstrate this tradeoff? Stating this at the end of the intro would help guide the reader in the methods section. Interpretation of evidence for risk-taking behavior As far as I can tell, the available information on risk avoidance behavior is the mortality data, showing that 3 tortoises died in CS while only 1 died in YW, and the surface activity data. Surface activity, an actual measure of tortoise risk-taking behavior, did not differ between the habitat sites. Thus, the conclusion that this study supports the hypothesis that risk taking behavior differs between habitat types rests solely on the barely significant difference in mortality based on rather small sample sizes (though I realize this is a ton of work to assess and difficult to show differences with such long-lived animals!). I think this mixed result should be explicitly spelled out in the discussion, and further caveated with the numerous possible alternative explanations for a mortality difference between habitat types that have nothing to do with behavior (predator abundance differences, tortoise size differences, available forage differences). It's not clear to me how habitat selection alone indicates the tradeoff (L312), so please make this clearer in the Discussion. L318: I think it's premature to say habitat quality affected morphometric parameters and mortality risk...you merely show an association, not causality. Given the lack of any behavioral evidence to support it, i think the last sentence is a stretch. Minor points L75: could you make explicit predictions from the theoretical tradeoffs described in the intro to guide readers as to how you are addressing your research questions with the data collected? The methods describe data collection but don't describe how the tests performed will address the questions about habitat use framed in the intro. L102: insert "are" after "Although they..." L193: specify that this is +/- SE (right?) L216: change this to "...burrow during 53 ± 4% (range: 20 – 100%) of observations" L279-80: remove partial sentence here. L251-256: In G. polyphemus, female-female agression and burrow defense is common. I am not sure whether social behavior is as important in lower-density G. agassizii populations, but is it possible that larger females exclude smaller females from high quality YW habitat? L251-256: Is there evidence of site/habitat type fidelity on the time scales that would lead to a pattern determined by growth in the juvenile/subadult stage? Or are tortoises moving between habitat types throughout their lives? ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Habitat use by female desert tortoises suggests tradeoffs between resource use and risk avoidance PONE-D-21-24371R1 Dear Dr. Nafus, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Ofer Ovadia Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors have addressed my concerns and I believe the manuscript is now acceptable for publication. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No |
| Formally Accepted |
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PONE-D-21-24371R1 Habitat use by female desert tortoises suggests tradeoffs between resource use and risk avoidance Dear Dr. Todd: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Ofer Ovadia Academic Editor PLOS ONE |
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