Peer Review History
| Original SubmissionNovember 9, 2021 |
|---|
|
PONE-D-21-35687Rare SARS-CoV-2 Infection in Newfoundland and Labrador in the Absence of Public Health Laboratory-based ConfirmationPLOS ONE Dear Dr. Grant, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jan 07 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Sanjay Kumar Singh Patel, Ph.D. Academic Editor PLOS ONE Journal Requirements: 1. When submitting your revision, we need you to address these additional requirements. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please amend your current ethics statement to address the following concerns: a) Did participants provide their written or verbal informed consent to participate in this study? b) If consent was verbal, please explain i) why written consent was not obtained, ii) how you documented participant consent, and iii) whether the ethics committees/IRB approved this consent procedure. 3. Thank you for stating the following financial disclosure: This work was supported by a Covid-19 rapid research funding opportunity grant (Funding Reference Number: VR1 – 173202) from the Canadian Institutes for Health Research awarded through the COVID Immunity Task Force to MG, RR and KHo. . Please state what role the funders took in the study. If the funders had no role, please state: The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript." If this statement is not correct you must amend it as needed. Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf. 4. In your Data Availability statement, you have not specified where the minimal data set underlying the results described in your manuscript can be found. PLOS defines a study's minimal data set as the underlying data used to reach the conclusions drawn in the manuscript and any additional data required to replicate the reported study findings in their entirety. All PLOS journals require that the minimal data set be made fully available. For more information about our data policy, please see http://journals.plos.org/plosone/s/data-availability. Upon re-submitting your revised manuscript, please upload your study’s minimal underlying data set as either Supporting Information files or to a stable, public repository and include the relevant URLs, DOIs, or accession numbers within your revised cover letter. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. Any potentially identifying patient information must be fully anonymized. Important: If there are ethical or legal restrictions to sharing your data publicly, please explain these restrictions in detail. Please see our guidelines for more information on what we consider unacceptable restrictions to publicly sharing data: http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. Note that it is not acceptable for the authors to be the sole named individuals responsible for ensuring data access. We will update your Data Availability statement to reflect the information you provide in your cover letter. 5. Thank you for stating the following in the Funding Section of your manuscript: "This work was supported by a Covid-19 rapid research funding opportunity grant (Funding Reference Number: VR1 – 173202) from the Canadian Institutes for Health Research awarded through the COVID Immunity Task Force to MG, RR and KHo." We note that you have provided funding information. However, funding information should not appear in the Funding section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: "This work was supported by a Covid-19 rapid research funding opportunity grant (Funding Reference Number: VR1 – 173202) from the Canadian Institutes for Health Research awarded through the COVID Immunity Task Force to MG, RR and KHo" Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 6. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The research article entitled, "Rare SARS-CoV-2 Infection in Newfoundland and Labrador in the Absence of Public Health Laboratory-based Confirmation" by Ings et al., assessed the incidence of COVID-19 infection in the absence of a confirmatory test in persons suspecting they contracted COVID-19, by ELISA testing against multiple SARS-CoV-2 antigens was done to detect antibodies against SARS-CoV-2. Authors have concluded that broad public awareness and declaration of pandemic status in March, 2020 contributed to the perceived risk of contracting COVID-19 in Newfoundland and Labrador from late 2019 to April 2021 and raised expectation of its severity. Altogether this is an important and timely research article, this reviewer has certain suggestions that would help produce a more comprehensive overview of the topic: Comments: 1. Authors should provide limitations to their study. 2. At least one additional Figure (illustration) may be provided as to highlight the summary or prospect of this study. 3. To ensure the robustness and effectiveness of the risk model authors may support their finding with citing resent research articles to this manuscript. 4. The abbreviations should be cross validated in the manuscript (First define them fully followed by abbreviation) and one paragraph can be added for abbreviations. Reviewer #2: The current research article entitled " Rare SARS-CoV-2 Infection in Newfoundland and Labrador in the Absence of Public Health Laboratory-based Confirmation" by Danielle Ings et al. has studied/surveyed using a questionnaire to capture their perceived risk factors for exposure and symptoms and multiple SARS-CoV-2 antigens were performed to detect antibodies against SARS-CoV-2. The inclusion criteria of the participants are confirmed COVID-19 diagnosis and the unvaccinated person believed to be in contact with COVID-19. The results suggested that most subjects had no detectable antibodies against SARS-CoV-2, and suspected individuals with COVID-19 had symptoms common to other respiratory infections. Only rare cases traveled from Newfoundland and Labrador have unusually severe or persistent symptoms despite detecting negative results of Public Health testing for SARS-CoV-2 RNA involved persons in close contact with confirmed cases. This study has some flaws which need some explanation from the author. However, the study addresses a research topic of great interest, but specific comments would help produce a more comprehensive overview of the topic: Comments: 1. The English of the manuscript can be polished. 2. Line 219 in the manuscript looks misplaced. 3. First two paragraphs of the discussion section can be shortened and relevant information about mortality rate and various prevention approaches should be provided related to immunity and health i.e. doi: 10.1007/s12088-020-00908-0 and information regarding anti-COVID-19 Agents DOI: 10.1007/s12088-020-00893-4 can be provided. 4. The title of the manuscript should be modified. The manuscript does not provide substantial proof that unusually or persistent symptoms in persons in close contact with confirmed cases are due to rare SARS-CoV-2 variants. 5. In conclusion, in lines 320 to 324, the authors signify selectivity for SAR-CoV-2 nucleocapsid in detecting previous exposure to SARS-CoV-2. However, in the following line, the author also mentions that detecting antibodies against SARS-CoV-2 nucleocapsid alone cannot be considered diagnostic of past COVID-19 infections. Please explain then how the idea of the study can be justified when these two claims contradict each other. 6. In material methods section, the authors mention PBMCs are isolated and stored, but these PBMCs are not used in the manuscript. Therefore, please rewrite the material method section accordingly. 7. The author has represented his results in optical density at 450 nm. However, a ratio-based analysis of samples can be done for precise representation 8. Please mention how the cut-off value is determined for positivity based on reactivity with S or RBD in the manuscript. [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
|
Few SARS-CoV-2 Infection in Newfoundland and Labrador in the Absence of Public Health Laboratory-based Confirmation PONE-D-21-35687R1 Dear Dr. Grant, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Sanjay Kumar Singh Patel, Ph.D. Academic Editor PLOS ONE |
| Formally Accepted |
|
PONE-D-21-35687R1 Few SARS-CoV-2 infections detected in Newfoundland and Labrador in the absence of Public Health Laboratory-based confirmation Dear Dr. Grant: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Sanjay Kumar Singh Patel Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .