Peer Review History
| Original SubmissionJuly 21, 2021 |
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PONE-D-21-23669 Complexity and variability analyses of motor activity distinguish mood states in Bipolar Disorder PLOS ONE Dear Dr. Jakobsen, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Oct 11 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Kind regards, Gaetano Valenza, Ph.D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. In your Data Availability statement, you have not specified where the minimal data set underlying the results described in your manuscript can be found. PLOS defines a study's minimal data set as the underlying data used to reach the conclusions drawn in the manuscript and any additional data required to replicate the reported study findings in their entirety. All PLOS journals require that the minimal data set be made fully available. For more information about our data policy, please see http://journals.plos.org/plosone/s/data-availability. Upon re-submitting your revised manuscript, please upload your study’s minimal underlying data set as either Supporting Information files or to a stable, public repository and include the relevant URLs, DOIs, or accession numbers within your revised cover letter. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. Any potentially identifying patient information must be fully anonymized. Important: If there are ethical or legal restrictions to sharing your data publicly, please explain these restrictions in detail. Please see our guidelines for more information on what we consider unacceptable restrictions to publicly sharing data: http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. Note that it is not acceptable for the authors to be the sole named individuals responsible for ensuring data access. We will update your Data Availability statement to reflect the information you provide in your cover letter. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The manuscript compared activity patterns in patients (n=14) with bipolar disorder during between their manic states and euthymia, using various mathematical tools, such as sample entropy, or graph-based method. The significant differences in activity patters were found in some indices. However, the results were inconsistent against the choice of the parameter vales of analytical methods, or time of day. In addition, the manuscript includes some important issues possibly affecting the results. 1) The first recording of motor activity was conducted during hospitalization, while the second was conducted out of the hospital? If so, how do the authors think the effects of different recording situations? 2) The process that one-minute activity counts were derived from tri-axial acceleration data were not described. For example, some filtering was applied to the raw data?, how the 3-dimentional data were converted into one-dimensional data? The definition of “activity” is the most important in those research. 3) The mathematical interpretation of the index, RMSSD/SD, might be provided for a potential reader of the journal. 4) Why was the string number set to six in the symbolic dynamics method? 5) Did the results change when a different number of cliques was selected? 6) Age often affects the activity levels or variance. The author may test the correlation of age with significant behavioral indices. 7) Related above, the reviewer suggests to check the correlation among behavioral indices (e.g. sample entropy vs network properties). This may provide further insight on what kind of behavioral dynamics contributes the results obtained. 8) The results derived from 1190 minutes data were possibly affected by the differences in sleep between mania and euthymia. Sleep effects should be carefully treated. 9) As the authors discussed by themselves, the results of the similarity graph method were inconsistent among different hyper-parameter values, or difference in time of day. This would be one of targets for criticism of this manuscript. Showing the systematic changes of behavioral indices with varying parameter vales may be one possible way to show the robustness of the results. More specifically, for example, calculate 3-cliques values for k=2,3,4,5,…, and then plot the results as a function of k. Similarly, effects of the choice the time window of data could be evaluated (e.g., 7:00-9:00, 8:00-10:00,….) 10) Figure 2: no label and no unit on the y-axis Reviewer #2: This is an interesting study that will be of interest to the readership of PLOS One and to the field of psychiatry more broadly. The authors identify within subject differences in the complexity of motor activity patterns between mania and euthymic states among individuals with bipolar disorder. Although the sample size is small, realistically it is difficult to collect such data and the authors should be commended for their effort. The study provides empirical support of what is clinically intuitive, using a sound methodology and the approaches taken are somewhat novel in the area. Some of the expression of terms in the manuscript is in my opinion quite awkward and could be improved. I have the following feedback that I believe the authors could integrate to improve the quality of this manuscript. Abstract - Line 37-38: the authors state that there were fewer edges and bridges in their analysis. It would be helpful for the reader if the authors provided some context in the abstract for people unfamiliar with this approach. As currently written, it assumes knowledge of this analysis before reading the rest of manuscript. Are edge and bridge frequency measures of complexity analogous to entropy? If so please state, if not please differentiate. Intro - Line 54/55: needs citation - Line 56: in my opinion ‘full-blown’ mood episode is a rather colloquial/unrefined way of describing a severe, clinically confirmed mood episode. The authors might consider revising. - Line 71: ‘dissolved’ is a strange way to describe circadian dysfunction. I would suggest an attenuated or less robust circadian rhythm instead if that is what the authors mean? - Line 95/96: what do the authors mean when they state that non-linear dynamic analyses are considered the most rewarding method – could the authors revise the term ‘rewarding’. Do you mean recommended method or most informative method? You could additionally elaborate on why this method is superior. - General comments on introduction and positioning the study: the authors refer to the previous similar work conducted in this area (e.g. review of the Krane-Gartiser et al studies). However, it is not quite clear what the unique contribution of this study is. The authors suggest that previous studies have been conducted using small sample sizes, but so too is the present study one with a small sample size. The authors state that previous work has focused on groupwise differences and in contrast the current study involves a within-subject/intra-individual design. I believe the authors have missed the opportunity to emphasise how their approach advances the evidence demonstrated previously. Perhaps you might consider highlighting the advantages of intra-individual comparisons between acute and remitted mood states in order to communicate the novelty of your study. Method and Results - The standard convention in the participants section would be to state the n of sample. This is done elsewhere in manuscript but should also be in the top-line of the participants section. - The brand and manufacturer of the actigraph used should be stated (or otherwise the manufacturer of the accelerometer that the researchers mounted to the wristband). Is reference 28 supposed to refer to this? Please make more explicit in methods section. - Do I understand correctly that the accelerometry was only conducted over the space of one day? This is a major limitation and needs to be acknowledged. - Were there any bespoke R packages used to analyse these data? If so it would be best practice to acknowledge and reference. Also is a markdown of this R code available anywhere for those who wish to apply a similar approach? - The authors should provide further justification for selected the morning and evening time windows. Was this decided post-hoc upon inspection of available data (implied in manuscript) or was this an a priori decision based on some inference of the circadian rest-activity pattern? If the latter the authors should be aware that the biological morning and evening is determined by the underlying circadian rhythm and, as this was not assessed, arbitrarily defining morning and evening times for the purpose of comparing circadian timing is not appropriate. Later in the discussion the authors use these findings to argue that there is a reduction in circadian variation which I do not think is appropriate. They looked at a diurnal difference within a two hour period in both the morning and evening… any claims made about the underlying circadian rhythm of patients with mania should be revised and the conclusions tempered. - Regarding the threshold of <5% missing data considered acceptable – do the authors have a reason for selecting this minimum threshold or a source they can reference for this recommendation? - Why was autocorrelation with a lag of 1 minute chosen? The Krane-Gartiser study to which the authors refer in discussion used several different autocorrelation lag windows. - For the general reader who is unfamiliar with the RMSSD measure it might be useful to state that this measures instability between successive intervals rather than solely variability as assessed by SD. Furthermore, it is unclear to me why both are given as a ratio of the mean. Is there an assumption that greater motoric activity is correlated with both greater RMSSD and SD and the ratios are an attempt to deal with this confound? (e.g. deriving a coefficient of variation). Similarly, the reason for using the RMSSD as a ratio to SD could be explained. Could the authors please expand on their methods here. Is this to uncouple epoch-to-epoch instability from over variability? - The authors go into great detail in explaining the similarity graph algorithm. However, I believe they should highlight what this measure reflects and how it different from variability, instability, and complexity as assessed by the other measures. What is the benefit of this analysis and if similar to the entropy and symbolic dynamics method? Could the authors provide context on why this does not create a redundancy of measures? - Table 2 correction: for the RMSSD (% of mean), the value should be 69.8 rather than using a comma as a decimal point. - Several results in Table 2 and Table 3 are reported as significant at P<0.05 yet the methods section describes a Bonferroni revised alpha of 0.0125 being the threshold for statistical significance. Please clarify which is the correct threshold and update the results and discussion accordingly. Discussion - Generally, the discussion could be improved by situating the novelty of the authors findings within the theme of how these findings might be clinically translated. Much of the discussion section in which the authors interpret their results recaps the results section. - The use of circadian variation in lines 437-438 is not appropriate for the reasons I have previously detailed. Caution should be applied in making inferences about the circadian timing system as there is no contemporaneous measure of endogenous clock function. Please give consideration to this point in the revised manuscript. - Anitpsychotic and mood stabiliser medications are mentioned in the discussion, but these are not highlighted as limitations. Both may have profound effects on motor rest-activity patterns and surely obfuscate the effect of mood state. - The authors state that no previous studies have applied such state-of-the-art measures. Yet, as I understand it, the novelty is limited to the similarity graph algorithm. Most of the measures of instability/complexity/autocorrelation have previous been applied in other studies. Therefore, the authors should revise this claim. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-21-23669R1Complexity and variability analyses of motor activity distinguish mood states in Bipolar DisorderPLOS ONE Dear Dr. Jakobsen, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, your work should be revised further to fully meet PLOS ONE’s publication criteria. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. In particular, the role and impact of sleep pattern on your findings should be carefully evaluated and reported. We recommend to remove the sleep period data and re-evaluate the experimental results. Once you do so, please submit your revised manuscript by Dec 20 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Gaetano Valenza, Ph.D. Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: (No Response) Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Thank you for your responses to my comments and suggestions. But, I still have concern about the effects of sleep on your results. To my comment # 8, the authors respond `in the analysis we have focused on the overall differences in the motor activity recordings. There has been no particular attention on sleep, beyond as a factor in the overall analysis’. As clearly shown in Fig. 2, activity pattens and activity mean levels during sleep periods are different between mania and euthymia. I suspect that those clear differences have non-negligible effects on the results. The authors may discuss this or examine effects of activity data during sleep on their results, for example, by removing sleep period data. Reviewer #2: The authors have returned a considered response to each of the points raised and this revision improves the overall quality of the original manuscript. I am pleased to recommend publication. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Complexity and variability analyses of motor activity distinguish mood states in Bipolar Disorder PONE-D-21-23669R2 Dear Dr. Jakobsen, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Gaetano Valenza Academic Editor PLOS ONE |
| Formally Accepted |
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PONE-D-21-23669R2 Complexity and variability analyses of motor activity distinguish mood states in Bipolar Disorder Dear Dr. Jakobsen: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Gaetano Valenza Academic Editor PLOS ONE |
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