Peer Review History
Original SubmissionJune 4, 2021 |
---|
PONE-D-21-16684 The impact on research and researchers of conducting preclinical systematic reviews: a mixed methods case study PLOS ONE Dear Dr. Julia Menon, Thank you for submitting your manuscript to PLOS ONE. This is generally a well written paper but after careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please address the peer reviewers' comments which offer suggestions for improving readability and grammatical checks. Where applicable, we ask you to provide a point by point response the comments provided. As PLOS ONE does not copy edit accepted manuscripts we ask you to conduct a thorough spell and grammatical check before resubmission Please submit your revised manuscript by 30 August 2021. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. We look forward to receiving your revised manuscript. Kind regards, Eleanor Ochodo Academic Editor PLOS ONE Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Thank you for stating the following in the Competing Interests/Financial Disclosure * (delete as necessary) section: “I have read the journal's policy and the authors of this manuscript have the following competing interests: Julia Menon declares that she worked for the Department “Health Evidence” within the Radboudumc, in the same team as the coaches who provided training and support for the “knowledge infrastructure” module. Since February 2021, she has a paid position via ZonMw. Merel Ritskes-Hoitinga, who supervised this study, is the head of the SYstematic Review Center for Laboratory (animal) Experimentation (SyRCLE) team. Pandora Pound declared no competing interest. Erica van Oort, who supervised this study, is project manager for ZonMw and is in charge of the “knowledge infrastructure” module, as part of the ZonMw MKMD programme. However, we all sincerely declare that we did our utmost to remain impartial when conducting, analysing and supervising this study.” We note that you received funding from a commercial source: [Name of Company] Please provide an amended Competing Interests Statement that explicitly states this commercial funder, along with any other relevant declarations relating to employment, consultancy, patents, products in development, marketed products, etc. Within this Competing Interests Statement, please confirm that this does not alter your adherence to all PLOS ONE policies on sharing data and materials by including the following statement: "This does not alter our adherence to PLOS ONE policies on sharing data and materials.” (as detailed online in our guide for authors http://journals.plos.org/plosone/s/competing-interests). If there are restrictions on sharing of data and/or materials, please state these. Please note that we cannot proceed with consideration of your article until this information has been declared. Please include your amended Competing Interests Statement within your cover letter. We will change the online submission form on your behalf. 3. Your ethics statement should only appear in the Methods section of your manuscript. If your ethics statement is written in any section besides the Methods, please delete it from any other section. 4. Please include a copy of Table 1 which you refer to in your text on page 33 and table 12 in page 34. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: N/A ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: 1. Yes, this manuscript technically sound, and its data support the conclusions reached. 2. Yes, statistical analysis were performed appropriately 3. Yes, all data was available 4. Yes, it is presented in an intelligible fashion and written in standard English 5. Comments have been attached. Reviewer #2: I would like to thank the editor for the opportunity to review this very interesting paper; and would also like to thank the authors for conducting and reporting on this important and fascinating research topic on preclinical evidence synthesis; that is, relating to meta-research of laboratory experiments on animals. The paper investigates the impact of conducting a preclinical systematic reviews (SR), with funded coaching and workshops, on researchers and their subsequent research. While the limitations in terms of generalisability should be, and are, acknowledged, this is an important first step in reducing animal waste while improving and standardising preclinical work. The work shines the light on a very important and often neglected aspect of research waste: the waste of animal subjects in research. The authors are commended for this. It is our responsibility as scientists to conduct research on animals as ethically, rigorously and efficiently as possible; to ensure we obtain the correct results the first time, with minimal animal use. This may very well be a first-order seminal paper in the establishment of SRs as the top tier of the evidence hierarchy in this field. I offer the following thoughts with regards to the manuscript for the consideration of the editor and authors. I have marked the most pressing issues, ones I would classify as major in a differently designed study, with 'IMPORTANT' throughout the review. Overall The manuscript would benefit from editing for minor spelling, punctuation and grammatical errors throughout, but readability in general is good. I have attempted to identify the most glaring errors in this review. Abstract Lines 17-18: It is not clear from this statement whether the focus of the ZonMw grant scheme is preclinical SRs specifically, or SRs in general. Lines 22-23: This sentence does not accurately reflect that recruited researchers could be those who had finished a preclinical SR as well as those still busy conducting a preclinical SR (and indeed, those who had started, but not finished their SR). Lines 36-39: Though the authors do couch their language here, a word of caution: in the absence of measurements in a control group which did not receive the funded interventions and conducted a preclinical SR; the authors are requested to exercise caution in attributing the reported changes to the interventions alone. Even though researchers may themselves attribute these changes to the intervention, there may be a complex interplay of factors, e.g. the growth that happens during the work done for a PhD, contributing to their changing views and skill sets. Introduction General: It would be useful if authors could explicitly define early on in the manuscript what is meant by ‘preclinical’, as the term is also sometimes used to refer to pre-hospital and emergency medicine contexts. Line 41: Suggest changing to ‘Keeping up to date with health/medical literature…’ Line 46: Please remove errant ‘-‘ from the sentence ending on this line. Line 56: Consider changing ‘throw light’ to ‘cast light’. Line 74: This introductory line should be presented as such. In its present state it is confusing and appears as another question, instead of the overarching aim. I would suggest amending this sentence to ‘This work aims to assess the impact of conducting preclinical SRs on researchers, their research and their field through the following objectives:’ Lines 115-116: While it is acknowledged that these would be outside the scope of the current manuscript, which already describes a great deal of work, it would be interesting to assess the policy impacts and societal impacts (areas 2 and 4 in the manuscript) of the intervention in question using the modified Kuruvilla et al. 2007 checklist. Materials and Methods Line 142: It is not clear what is meant by ‘thrive’ in this context, but it is assumed to be an incorrect translation. Consider changing to ‘drive’ or ‘development’, depending on the original intent. Lines 157-158: This sentence contradicts methodology in following sections, which describes participants who had not finished their SRs also included in the sample. Please correct this factual inaccuracy, or elaborate on why non-completers were included post hoc – if that was the case. Line 163: It may be useful to include here whether participants consented to be contacted by ZonMw for the purposes of intervention assessment when providing details, if this was indeed the case. Line 177: It would be useful, though not essential, to state at the start of this section whether informed consent was sought to use the responses provided in questionnaires. Line 186: As it is not possible for researchers still conducting their SRs to evaluate post-SR skills and experience, it is assumed that this should read ‘For the latter, only points 1, 2 and 3 were evaluated.’ Please correct if this is the case, or elaborate on how post-intervention experiences would be appraised before the end of the intervention – if the manuscript is correct in its current format. IMPORTANT Lines 205-208: It is a pity that more demographic/explanatory variables were not collected on participants, as some measures of association could have been calculated. This would have provided some insights into differences between researchers and how this may, or may not, have shaped their responses – specifically given the outstanding uncertainty presented by the lack of a control group of questionnaire participants. It would be useful if the authors could include these considerations in their manuscript, perhaps as a next step in the evolution of understanding the role of SRs in preclinical work. Lines 235-236: Please provide a breakdown of the number of inputs per background/career level, i.e. ‘…Thorough piloting was performed for both questionnaires and semi-structured interviews by seven researchers knowledgeable in SRs with varying backgrounds and career levels, namely research assistant (n=x), PhD student (n=y) and professor (n=z).’ I don’t think it’s necessary to identify a person at a professorial level as ‘associate’ (or not). Results Lines 243-244: It is very possible that response and completion rates may be defined differently by different sources. A leading survey software defines response rate as ‘the number of people who completed the survey divided by the total sample’ (i.e. 45/95=47.4%), and completion rate as ‘the number of surveys filled out and submitted divided by the number of surveys started’ (i.e. 45/61=73.8%). Please revisit these concepts and calculations, and provide a reference for the definitions used to avoid confusion among readers. Line 248: Please revise the start of the sentence ‘And the 7 remaining…’. It is recommended that this sentence be combined with the previous sentence. Line 265-266: I am not convinced that reporting an ‘average median’ is wise; it is also a meaningless value in terms of agreement without information on the statements asked and the direction of the question. I wouldn’t risk readers skimming over this without referring to the figures, where the median breakdown per question provides much richer information. Line 317: Steer clear of statements such as ‘the results are quite positive’ as this indicates inherent bias for a result. IMPORTANT Lines 317-321: As stated before, it is very difficult to know whether the equivalence in the response of SR completers and non-completers can be ascribed to the SR, given the lack of a control comparator. It is possible that these insights may have evolved in respondents in a similar field, and with comparable education and training, in the absence of conducting a preclinical SR. This evolution might even be suggested by the identical medians in the two groups, with further SR experience (in completers) leading to no increase in critical appraisal compared to non-completers. It is accepted that this uncertainty is part of the case study design, but please make this clear to the reader. IMPORTANT Line 338: It would be interesting to know whether respondents participating in the scheme during 2020 had a different experience to those pre-pandemic in terms of time taken/delays with their SRs. If these data are available this might be an interesting aspect to include, as the time required to conduct an SR often presents a considerable barrier to their initiation and completion. Lines 470 and 484: Please steer clear from informal language such as ‘no easy business’ and ‘budge one bit’. Furthermore, ‘(yet)’ [line 484] again demonstrates an inherent bias by the author for a certain outcome, and should be avoided at all costs. Discussion IMPORTANT General: As stated before, it is very difficult to know whether the reported experiences and skills of respondents can be ascribed to conducting the preclinical SR, given the lack of a control comparator or association with explanatory variables. It is possible that the reported insights would have developed in respondents in a similar field and with comparable education and training. The authors do address the subjective nature of their findings, but could suggest next steps in this important work. As a starting point, it might be useful to suggest (and consider) a pre-post test with a new intake of researchers, measuring their attitudes and skills at baseline and again following the completion of their SR. An alternative, but a weaker test of causality, would be to measure explanatory variables and test associations with reported outcomes in future work. General: It was surprising not to see any exploration of the effect of the pandemic on the findings presented in this paper, given both the global impact of the event as well as several mentions of COVID-19 in the questionnaire responses – specifically related to delays in SR completion. It might be useful for the authors to include a paragraph on how this context may have shaped their findings, both in terms of practicalities for SRs as well as responses; particularly due to shifts in mental health and outlook for many during this time. IMPORTANT Lines 568-569: Statements attributing changes in mindset and behaviour to the conduct of preclinical SRs without acknowledging the complex myriad of circumstances that may contribute to these are problematic. Please review this statement (and others like it) to accurately reflect that preclinical SRs *appear to contribute* to a shift in mindset and behaviour, though comparative data, and more work to identify other explanatory factors, is needed. Conflicts of interest The authors declare their association with the invention provider upfront, and no serious conflicts were identified. I would like to caution the authors, however, around the language they use and how it unintentionally reflects a preferred direction of their findings. With thanks again for the opportunity, and best wishes. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Dr Amanda S Brand [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
|
Revision 1 |
PONE-D-21-16684R1The impact of conducting preclinical systematic reviews on researchers and their research: a mixed method case studyPLOS ONE Dear Julia Menon, Thank you for submitting your manuscript to PLOS ONE. Your responses to the previous comments raised have been well received. We however request that you respond to two minor comments by reviewer 2. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by 18 Dec 2021. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
We look forward to receiving your revised manuscript. Kind regards, Eleanor Ochodo Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #2: Thank you very much for your considered feedback and amendments to the manuscript - as I stated during the first round of review, this is a very important piece of work; I hope to see it in print (and cite it!). I have no further *material* comments, but two further suggestions to consider, based on your feedback: - Line 249: I think '(associate)' can be removed from the text entirely, i.e. "...namely research assistants (n=2), a PhD student (n=1) and professors (n=4)." - Line 523: I take your point on the intention behind "...had not (yet) made..." in the previous version, and that this reflects the wishes of the participant rather than you as an author team. While I do think it's better to steer clear from any wording that could result in perceived bias, you could consider changing the sentence to "...discovering that the insights from their SRs appeared to have had no impact on their field to date." This is entirely up to you, as the revised version you provided is also fine, but perhaps this provides a bit more nuance. Wishing you all the best, Amanda ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Dr Amanda Salomé Brand [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
Revision 2 |
The impact of conducting preclinical systematic reviews on researchers and their research: a mixed method case study PONE-D-21-16684R2 Dear Julia Menon, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Eleanor Ochodo Academic Editor PLOS ONE |
Formally Accepted |
PONE-D-21-16684R2 The impact of conducting preclinical systematic reviews on researchers and their research: a mixed method case study Dear Dr. Menon: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Prof Eleanor Ochodo Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .