Peer Review History

Original SubmissionAugust 26, 2021
Decision Letter - Qi Zhao, Editor

PONE-D-21-25428MNI: An enhanced multi-task neighborhood interaction model for recommendation on knowledge graphPLOS ONE

Dear Dr. Hao Zhang,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please submit your revised manuscript by Oct. 6th. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.
  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.
  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Qi Zhao

Academic Editor

PLOS ONE

Journal Requirements:

When submitting your revision, we need you to address these additional requirements.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at 

https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 

https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

2. Thank you for your submission to PLOS ONE. Before we can proceed, we kindly ask you to address the following concerns:

Upon internal assessment of your manuscript, we found that it is similar to one of your previous works published in PLOS ONE: "Multitask Feature Learning Approach for Knowledge Graph Enhanced Recommendations with RippleNet".

PLOS policy specifies that if a submitted study is similar to previous work, as appears to be the case in this instance, authors should provide a sound scientific rationale for the submitted work and clearly outline how the new submission differs from the past work. The manuscript should also include, if appropriate, a discussion of the current study in context of previous work. We note that the previous work was not cited in your list of references, nor was it included in the section "Related Works". We would expect it to be included in both of these sections.

We also note that numerous citations in your list of references are conference proceedings. While we do allow for this, we would expect the majority of your statements to be supported by reference to peer-reviewed literature. As such, we suggest that you support your statements with a greater number of peer-reviewed citations.

Furthermore, you have used LastFM, MovieLens and Book-Crossing datasets; however, we ask you to provide the URLs for these sites, and to additionally provide the search terms or other details needed to extract the exact data used in the study. The manuscript should provide sufficient details such that any reader could readily replicate the results of your study. Without details on how you accessed the exact data, this is not possible.

We appreciate your attention to these queries and look forward to your response.

3. We suggest you thoroughly copyedit your manuscript for language usage, spelling, and grammar. If you do not know anyone who can help you do this, you may wish to consider employing a professional scientific editing service. 

Whilst you may use any professional scientific editing service of your choice, PLOS has partnered with both American Journal Experts (AJE) and Editage to provide discounted services to PLOS authors. Both organizations have experience helping authors meet PLOS guidelines and can provide language editing, translation, manuscript formatting, and figure formatting to ensure your manuscript meets our submission guidelines. To take advantage of our partnership with AJE, visit the AJE website (http://learn.aje.com/plos/) for a 15% discount off AJE services. To take advantage of our partnership with Editage, visit the Editage website (www.editage.com) and enter referral code PLOSEDIT for a 15% discount off Editage services.  If the PLOS editorial team finds any language issues in text that either AJE or Editage has edited, the service provider will re-edit the text for free.

Upon resubmission, please provide the following:

The name of the colleague or the details of the professional service that edited your manuscript

A copy of your manuscript showing your changes by either highlighting them or using track changes (uploaded as a *supporting information* file)

A clean copy of the edited manuscript (uploaded as the new *manuscript* file)”

4. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: This paper describes a recommendation system on knowledge graph, which deploys neighbor-neighbor interactions to explore high-order relations. Then the algorithm applies a cross & compress unit to combine the recommendation system and knowledge graph, whereby those two modules can interact and share latent features to improve the recommendation precision.

Pros:

The algorithm explains well understood and the experiment supports the algorithm assumption and shows improvement compared with other baselines.

Cons:

1.Figure 2 is the whole structure of the framework, however, needs more explanations in the paragraph.

2.There are some mistakes of English grammar in the abstract and the introduction part, needs to correct them. For example, Therefore, researchers tend to integrate side information which includes user… “which” should be changed to “that”

3.The future work should be discussed in detail.

4.The caption of Figure 1 is not self-explained. The caption should state which one is user, item, or attribute.

5.In the experiment, Figure 5-7 the yellow line is not clear enough to recognize. Also, the captions should be in more detail.

Reviewer #2: The algorithm MNI adopts the separation of recommendation system and knowledge graph, and use a bridge unit to share each latent feature. It also applies neighbor-neighbor reconstruction instead of user-item interaction, containing more information about user-user interaction, item-item interaction, and a deep understanding of the high-order relations.

However, some minor correction should be made:

1. Reference format is not consistent. The authors should double check and revise it.

2. The algorithm 1 on page 10 should be explained more in detail. It is fuzzy when just looking at the algorithm.

3. The blocks and colors in the figure 2 is not well explained. Are there any different meaning about different shapes and colors? The author needs to be clearer.

4. About the recommendation module, the author use 2-layer GAT. Could you explain GAT as for the reader is hard to follow.

5. Minor typos, e.g., Missing space between citation and text.

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: Yes: Zhen Liu

Reviewer #2: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Revision 1

Dear editor,

I have uploaded the responses in three separate files, response to editors, response to reviewer 1 and 2.

Response to editor:

Q1: Style requirements

Response: We have changed the style and added the line number. The title page and the main body are adapted and hopefully consistent with your requirements. If there is something wrong, please contact us and we appreciate your time.

Q2: Similarity to one of your previous works published in PLOS ONE: "Multitask Feature Learning Approach for Knowledge Graph Enhanced Recommendations with RippleNet":

Response: Sorry for the fuzziness of the two works. Both works are improvements based MKR, however, in two different direction. This new submission differs from the previous one on three aspects:

We use neighbor-neighbor interactions to explore the recommendation system, which includes user-item interactions, item-item interactions, item-entity interactions, and user-item interactions as illustrated on Page 8 the recommendation module part. This algorithm leads to more accurate recommendation precision. However, in the previous work, it only consider the interactions between users and historical clicked items using Ripplenet.

We use a reconstruction step to reformulate the recommendation module to G_kig instead of normal recommendation system in the previous work.

We leverage attention mechanism to highlight the important edges between neighbors, in order to keep more meaningful semantics.

Thank you for your advices, we also added additional clarification and the comparison between them in the Related work with highlighted texts and also cited the previous work at [37] in the reference in the manuscript.

Q3: Data access:

Response: Thank you for your suggestion. We added URLs footprints to the data sets of LastFM, Movielens and Book-Crossing on Page 11. Those data can be directed downloaded from the websites and used to replicate our work. But we can also upload our data to the website if requested.

Q4: Peer-reviewed references:

Response: Thank you for your helpful advice to improve the quality of our paper. We add more journal peer-reviewed references and also change some citations’ form. The added reference number are: 9, 13, 14, 15, 16, 34, 37, 41, 50.

Q5: English revision:

Response: We have checked the language, grammar, and spelling by our colleagues, named Tianming Zhao and Jifen Tao. They have made changes to the grammar and the sentence fluency.

Response to reviewer 1:

Point 1: Figure 2 is the whole structure of the framework, however, needs more explanations in the paragraph 


Response 1: Thank you for your advice. We rewrite the first paragraph in section 3 on page 5. We add a detailed procedure for recommendation module and knowledge graph embedding module, pointing out the meaning of symbols and also the color of the blocks.

Point 2: There are some mistakes of English grammar in the abstract and the introduction part, needs to correct them. For example, Therefore, researchers tend to integrate side information which includes user… “which” should be changed to “that”

Response 2: Thank you for your suggestions. We found it very useful to improve our paper. We changed the English grammar carefully in the abstract and the introduction part.

Point 3: The future work should be discussed in detail.

Response 3: We have adopted your suggestion by extending the future works to random walks and implicit relations. We add some discussion to fulfil the future works and it is clearer to understand.

Point 4: The caption of Figure 1 is not self-explained. The caption should state which one is user, item, or attribute.

Response 4: Thank you for your suggestions. We add some explanation about the Figure 1.

Point 5: In the experiment, Figure 5-7 the yellow line is not clear enough to recognize. Also, the captions should be in more detail

Response 5: Thank you for your suggestions. We have changed the yellow line to orange to be clearer. Also, we add some modifications in the captions to be detaied.

Response to reviwer 2:

Point 1: Reference format is not consistent. The authors should double check and revise it

Response 1: Thank you for your suggestions. We have modify the reference format so that they are consistent.

Point 2: The algorithm 1 on page 10 should be explained more in detail. It is fuzzy when just looking at the algorithm.

Response 2: We are grateful for your suggestions. We have added some more explanations to Algorithm 1 so that it is clearer. We explain the whole procedure in steps: reconstruction, recommendation module, cross&compress unit, and KGE module.

Point 3: The blocks and colors in the figure 2 is not well explained. Are there any different meaning about different shapes and colors? The author needs to be clearer.

Response 4: Thank you very much for your comments. We have added some explanations about the colors and shapes in the figure 2 in the first paragraph under Section 3. Also, we modify some explanations about Figure 2 to be specific.

Point 4: About the recommendation module, the author use 2-layer GAT. Could you explain GAT as for the reader is hard to follow.

Response 5: We agree with the reviewers comments. We added some explanations about how the GAT works right before the phrase “2-layer GAT”.

Point 5: Minor typos, e.g., Missing space between citation and text

Response 5: We agree with the reviewers comments.We have double checked through the paper and change the space problem.

Attachments
Attachment
Submitted filename: author to respond reviewer 2.docx
Decision Letter - Qi Zhao, Editor

MNI: An enhanced multi-task neighborhood interaction model for recommendation on knowledge graph

PONE-D-21-25428R1

Dear Dr. Hao ZHANG,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Qi Zhao

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: (No Response)

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The authors have expounded the opinions I put forward in the last round of review, and the data description in the manuscript can also technically support the author's conclusions. It is hoped that the authors will check the English expression before the official publication of the manuscript.

Reviewer #2: (No Response)

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: No

Formally Accepted
Acceptance Letter - Qi Zhao, Editor

PONE-D-21-25428R1

MNI: An enhanced multi-task neighborhood interaction model for recommendation on knowledge graph

Dear Dr. Zhang:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Qi Zhao

Academic Editor

PLOS ONE

Open letter on the publication of peer review reports

PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.

We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.

Learn more at ASAPbio .