Peer Review History

Original SubmissionJuly 14, 2021
Decision Letter - Jian Liu, Editor

PONE-D-21-23023

Distinct responses of frond and root to increasing nutrient availability in a floating clonal plant

PLOS ONE

Dear Dr. Jin,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

The study is interesting while the manuscript has some problems as suggested by the reviewers. The authors should respond to the comments of the reviewers one by one and revise the manuscript accordingly. The revised manuscript would be sent to the reviewers for further reviewing.

Please submit your revised manuscript by Oct 02 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.
  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.
  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Jian Liu

Academic Editor

PLOS ONE

Journal Requirements:

When submitting your revision, we need you to address these additional requirements.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at 

https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 

https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

2. We suggest you thoroughly copyedit your manuscript for language usage, spelling, and grammar. If you do not know anyone who can help you do this, you may wish to consider employing a professional scientific editing service.  

Whilst you may use any professional scientific editing service of your choice, PLOS has partnered with both American Journal Experts (AJE) and Editage to provide discounted services to PLOS authors. Both organizations have experience helping authors meet PLOS guidelines and can provide language editing, translation, manuscript formatting, and figure formatting to ensure your manuscript meets our submission guidelines. To take advantage of our partnership with AJE, visit the AJE website (http://learn.aje.com/plos/) for a 15% discount off AJE services. To take advantage of our partnership with Editage, visit the Editage website (www.editage.com) and enter referral code PLOSEDIT for a 15% discount off Editage services.  If the PLOS editorial team finds any language issues in text that either AJE or Editage has edited, the service provider will re-edit the text for free.

Upon resubmission, please provide the following: 

● The name of the colleague or the details of the professional service that edited your manuscript

● A copy of your manuscript showing your changes by either highlighting them or using track changes (uploaded as a *supporting information* file)

● A clean copy of the edited manuscript (uploaded as the new *manuscript* file)

3. In your Methods section, please provide additional information regarding the permits you obtained for the work. Please ensure you have included the full name of the authority that approved the field site access and, if no permits were required, a brief statement explaining why.

4. PLOS requires an ORCID iD for the corresponding author in Editorial Manager on papers submitted after December 6th, 2016. Please ensure that you have an ORCID iD and that it is validated in Editorial Manager. To do this, go to ‘Update my Information’ (in the upper left-hand corner of the main menu), and click on the Fetch/Validate link next to the ORCID field. This will take you to the ORCID site and allow you to create a new iD or authenticate a pre-existing iD in Editorial Manager. Please see the following video for instructions on linking an ORCID iD to your Editorial Manager account: https://www.youtube.com/watch?v=_xcclfuvtxQ

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: It’s an interesting work. The manuscript read fluently. I only have a few small questions.

1. The authors used 10 levels of Hoagland’s solution. There are some different formulas of Hoagland’s solution. Could the authors show the exact solution composition?

2. Effects of nutrients on plants’ growth have been linked to compositions and concentrations. For Egeria densa, ammonia nitrogen blow 1 mg L-1 could promote growth of plants, but ammonia nitrogen exceeding 10 mg L-1 might produce oxidative stress to plants and inhibit the growth. For Vallisneria natans, the thresholds of promotion and inhibition effects of ammonia nitrogen are respectively lower than 0.6 mg L-1 and higher than 1 mg L-1. Ammonia nitrogen in high concentrations of Hoagland’s solutions might make an adverse effect on growth, which should be considered and discussed.

3. There has been study showing that copper exceeding 1 μmol L-1 significantly inhibits growth of Spirodela polyrhiza. Mn exceeding certain concentration also has negative effect on growth of Spirodela polyrhiza. It has been proved by many studies that low concentration of heavy metal could promote growth. Heavy metal elements come from high concentrations of Hoagland’s solutions might also make adverse effects on growth. Some studies have also reported that heavy metal pollution decreased root to shoot ratio. Effects of heavy metal should be considered.

4. Different elements (ions) have antagonistic or synergistic effects with each other. An antagonistic (synergistic) relationship between elements (ions) at certain concentration may change into a synergistic (antagonistic) relationship at another concentration. For example, Ca2+ and K+ have antagonistic and competitive effects at normal concentration, while Ca2+ can promote the uptake of K+ by plants at very low concentration. The relationship between elements (ions) is complex due to composition of Hoagland’s solution, especially at high concentrations. This may have something with the hump-shaped and U-shaped changes.

It is suggested the authors should dive deeper into the experimental phenomenon.

Reviewer #2: The manuscript reported a case study that tested the effects of nutrient availability on clonal performance (growth, morphology and biomass allocation) of a floating clonal plant Spirodela polyrhiza. The novelty of the paper is to explore plant responses to a wide gradient of nutrient availability (1/64 to 8 × full-strength Hoagland solution), which have rarely been examined in previously published studies. The experimental design is clear, and the content was well edited.

However, when I checked the raw data in the supplementary material, there is one serious problem. It is not logical that the values of root mass and/or root to shoot ratio of S. polyrhiza are treated as zero when root length has non-zero values. The reverse situation is also not logical.

If some of data are missing, they should be treated as null values and excluded from the analyses. I suggest that the data should be re-analyzed and re-discussed after they are carefully checked.

Other minor problems were listed below.

Line 17, delete “or”.

Line 49, replace “flower” with “flowers”.

Line 69, replace “sizes” with “size”.

Line 75, delete “of time”.

Line 101, replace “show” with “showed”.

Line 111, It appears to be better to use the phrase “4 × full-strength Hoagland solution”, compared to the used one “4-Hoagland solution”, when describing the levels of nutrient availability.

Line 172, use “reasons”, instead of “mechanisms”.

Line 176 – 178, In your study, the nutrient solutions were refreshed with the four-day interval, so it seems to be sufficient for plant growth during the entire experimental period.

Line 216, delete “a lot”.

Line229, “master student”?

Line 230 – 438, the reference formats and some spelling errors should be carefully checked and corrected.

For instance, spelling errors: “ence” in line 315; “thr” in 362. Format errors: line 287-288; line 343, line 355-356; line 359; line 364-366; line 367-369; line 378; line 423.

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Revision 1

Reviewer #1: It’s an interesting work. The manuscript read fluently. I only have a few small questions.

Response: Thanks.

The authors used 10 levels of Hoagland’s solution. There are some different formulas of Hoagland’s solution. Could the authors show the exact solution composition?

Response: We have added the exact solution composition in the revised version (lines 94 – 98).

Effects of nutrients on plants’ growth have been linked to compositions and concentrations. For Egeria densa, ammonia nitrogen blow 1 mg L-1 could promote growth of plants, but ammonia nitrogen exceeding 10 mg L-1 might produce oxidative stress to plants and inhibit the growth. For Vallisneria natans, the thresholds of promotion and inhibition effects of ammonia nitrogen are respectively lower than 0.6 mg L-1 and higher than 1 mg L-1. Ammonia nitrogen in high concentrations of Hoagland’s solutions might make an adverse effect on growth, which should be considered and discussed.

Response: Nice point, thanks. We have addressed this issue in the discussion section. (Lines 224 – 227).

There has been study showing that copper exceeding 1 μmol L-1 significantly inhibits growth of Spirodela polyrhiza. Mn exceeding certain concentration also has negative effect on growth of Spirodela polyrhiza. It has been proved by many studies that low concentration of heavy metal could promote growth. Heavy metal elements come from high concentrations of Hoagland’s solutions might also make adverse effects on growth. Some studies have also reported that heavy metal pollution decreased root to shoot ratio. Effects of heavy metal should be considered.

Response: We agree and we have discussed it in the revised version (Lines 224 – 227).

Different elements (ions) have antagonistic or synergistic effects with each other. An antagonistic (synergistic) relationship between elements (ions) at certain concentration may change into a synergistic (antagonistic) relationship at another concentration. For example, Ca2+ and K+ have antagonistic and competitive effects at normal concentration, while Ca2+ can promote the uptake of K+ by plants at very low concentration. The relationship between elements (ions) is complex due to composition of Hoagland’s solution, especially at high concentrations. This may have something with the hump-shaped and U-shaped changes.

It is suggested the authors should dive deeper into the experimental phenomenon.

Response: Good to know, thanks. In the revised version, we also discussed the potential relationship between different elements in driving the responses of Spirodela polyrhiza to nutrient availability (Lines 227 – 229).

Reviewer #2: The manuscript reported a case study that tested the effects of nutrient availability on clonal performance (growth, morphology and biomass allocation) of a floating clonal plant Spirodela polyrhiza. The novelty of the paper is to explore plant responses to a wide gradient of nutrient availability (1/64 to 8 × full-strength Hoagland solution), which have rarely been examined in previously published studies. The experimental design is clear, and the content was well edited.

Response: Thanks.

However, when I checked the raw data in the supplementary material, there is one serious problem. It is not logical that the values of root mass and/or root to shoot ratio of S. polyrhiza are treated as zero when root length has non-zero values. The reverse situation is also not logical.

If some of data are missing, they should be treated as null values and excluded from the analyses. I suggest that the data should be re-analyzed and re-discussed after they are carefully checked.

Response: We agree and we have reanalyzed our data by excluding the null values, which did not change our results. We have updated the results in the revised version (Lines139 – 145, 165 – 170 and 178 – 181).

Specific comments:

Introduction

Line 17, delete “or”.

Response: Deleted (Line 36).

Materials and methods

Line 49, replace “flower” with “flowers”.

Response: Replaced (Line 69).

Line 69, replace “sizes” with “size”.

Response: Replaced (Line 90).

Line 75, delete “of time”.

Response: Deleted (Line 101).

Line 101, replace “show” with “showed”.

Response: Replaced (Line 131).

Results

Line 111, It appears to be better to use the phrase “4 × full-strength Hoagland solution”, compared to the used one “4-Hoagland solution”, when describing the levels of nutrient availability.

Response: Thanks, we replaced “4-Hoagland solution” with “4 × full-strength Hoagland solution” (Lines 143 – 145). We also changed the phrase throughout the whole manuscript (Lines 6 – 7, 92 – 93, 166 – 170 and 180 – 184).

Discussion

Line 172, use “reasons”, instead of “mechanisms”.

Response: Changed (Line 220).

Line 176 – 178, In your study, the nutrient solutions were refreshed with the four-day interval, so it seems to be sufficient for plant growth during the entire experimental period.

Response: Yes, we agree and we have removed this explanation.

Conclusions

Line 216, delete “a lot”.

Response: Deleted (Line 284).

Line229, “master student”?

Response: Deleted “Master” (Line 272).

References

Line 230 – 438, the reference formats and some spelling errors should be carefully checked and corrected.

For instance, spelling errors: “ence” in line 315; “thr” in 362. Format errors: line 287-288; line 343, line 355-356; line 359; line 364-366; line 367-369; line 378; line 423.

Response: We have checked and reformatted our references in the revised version (Lines 288 –507).

Attachments
Attachment
Submitted filename: Response to Reviewers.docx
Decision Letter - Jian Liu, Editor

Distinct responses of frond and root to increasing nutrient availability in a floating clonal plant

PONE-D-21-23023R1

Dear Dr. Jin,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Jian Liu

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The manuscript has improved. I have no more comments on the manuscript itself. However, the line numbers in responses are wrong. The author said questions were answered and discussed in Lines 94-98, 224-229. I spend some time in checking, and guess I find the right positions. The author should be more careful with writing.

Reviewer #2: (No Response)

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: No

Formally Accepted
Acceptance Letter - Jian Liu, Editor

PONE-D-21-23023R1

Distinct responses of frond and root to increasing nutrient availability in a floating clonal plant

Dear Dr. Jin:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Jian Liu

Academic Editor

PLOS ONE

Open letter on the publication of peer review reports

PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.

We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.

Learn more at ASAPbio .