Peer Review History
| Original SubmissionMarch 4, 2021 |
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PONE-D-21-07190 Automated contact tracing to prevent the spread of coronavirus in hospitals and nursing homes PLOS ONE Dear Dr. Hüttel, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Aug 22 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Please see the following video for instructions on linking an ORCID iD to your Editorial Manager account: https://www.youtube.com/watch?v=_xcclfuvtxQ 5. Please ensure that you refer to Figure 2 in your text as, if accepted, production will need this reference to link the reader to the figure. 6.We note that Figure 1 includes an image of a patient / participant in the study. As per the PLOS ONE policy (http://journals.plos.org/plosone/s/submission-guidelines#loc-human-subjects-research) on papers that include identifying, or potentially identifying, information, the individual(s) or parent(s)/guardian(s) must be informed of the terms of the PLOS open-access (CC-BY) license and provide specific permission for publication of these details under the terms of this license. Please download the Consent Form for Publication in a PLOS Journal (http://journals.plos.org/plosone/s/file?id=8ce6/plos-consent-form-english.pdf). The signed consent form should not be submitted with the manuscript, but should be securely filed in the individual's case notes. Please amend the methods section and ethics statement of the manuscript to explicitly state that the patient/participant has provided consent for publication: “The individual in this manuscript has given written informed consent (as outlined in PLOS consent form) to publish these case details”. If you are unable to obtain consent from the subject of the photograph, you will need to remove the figure and any other textual identifying information or case descriptions for this individual. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know Reviewer #2: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This is an interesting study. Given the differences between the Danish and US healthcare systems, I do have some questions and comments. Why did you note the different shifts of HCW in the nursing home and not the hospital? Do the nurses in the hospitals work rotating shifts? In the text you mention that you monitored nurses and nursing assistants in the nursing homes, but the graph shows guards and not nurses or nursing assistants. Please correct the text to match the graph. Lots of hospitals in the US do not use medication rooms to a great extent now since meds are sent from the pharmacy to the nursing units individually labeled for patients. Thus nurses do not have to count out and dispense medications, unless they are prn for pain. Why did you not include nursing stations as places of common interactions? All units still have a central nursing station and that is where nurses are between patient care. Is the lounge mentioned the same as a staff break room where lunches occur? I know that hand sanitizer outlets are located in halls and all patient rooms, but are they also in areas where no patient care occurs? Reviewer #2: The manuscript addresses a mainstream topic, and its results may be used to improve the overall approach to positive COVID-19 cases in the healthcare workforce, therefore proving to be useful to clinical and public health practice. It is written in cautious language and provides data on social interactions outside the commonly studied workplaces. The analytical part of the methods is developed to fully detail and in a fluent manner. There is no doubt concerning the pertinence and importance of its findings, which deserve to be published as they contribute to expand our scientific knowledge on the area, with practical implications in day-to-day practice. It claims that social interactions between healthcare workers - and between workers and rooms - occur almost exclusively below the 15-minute threshold considered by the WHO; in fact, most interactions are shorter than 5 minutes. These interactions happened mainly in the medication room, but authors also claim that passing-through areas are not negligible and need to be taken into consideration. It also claims, using mathematical simulations, that for each putatively infected worker, only 2 to 3 other nodes – either workers or rooms – may be infected, provided preventive measures are applied and the virus behaves as currently expected. Even in a worst-case scenario, there would be no need to isolate every worker and clean every room, effectively shutting down the premises. The authors go on to claim that their analysis highlighted some limitations of manual contact tracing that could be solved using an automated system. The paper has two main strengths. It uses an implemented system for detection of interactions based on Bluetooth sensors located in key areas. This allows researchers to identify every node-to-node interaction without facing recall bias, thus improving the reliability of the data collected. This system is comprehensive enough to include areas such as the hallway, the kitchen and staff toilet, which are usually absent in studies considering the same issue, and its great sensitivity make it tough for participants to manipulate the observers. The paper also differentiates interactions between the two most important settings in healthcare in terms of SARS-CoV-2 transmission – hospitals and nursing homes – which contrast widely in terms of social interactions, healthcare management, organization and purpose. The manuscript has 2 major areas that require an improvement, which are: the overall connection between title, abstract, objectives and conclusion; and the comprehensiveness of the discussion. Regarding the first, the authors write that the main objective was “(…) to investigate the social interactions that occur at hospitals and nursing homes and identify risk factors relevant to the spread of SARS-CoV-2.” (lines 38-39). This has no direct link with the title. While automated contact tracing may draw on the conclusions of this manuscript, it is not the topic being directly studied. The title should reflect the main finding of the paper, in line with its main objective, and that finding concerns social interactions. The same is true for the conclusions. The argument on how an automated system could improve manual tracing by better identification of interactions would be well placed in the discussion, but goes beyond the scope of the conclusions. I would recommend the conclusion to focus on key rooms of interactions, as it does, and on simulations’ results, if relevant. On the other hand, I found no risk factors being directly identified through simulations. Therefore, I would suggest the second objective to adapt better to the analysis performed. Regarding the discussion, the authors consider both rooms and workers in the of nodes V, as both may be sources of transmission (line 101). While this is true, the dynamics of transmission from room to worker or from worker to worker are different. In their simulations, for λ=1, only a few nodes get infected, slightly above 2 for each setting. In practice, whether the node is a room or a worker has markedly different implications – rooms are cleaned and become immediately operational, while workers need to be isolated for a certain time period, which affects normal healthcare delivery. These issues are not present in the discussion, which I find to be underdeveloped given the tremendous potential these findings have to discuss disease dynamics, health policy and public health interventions. There are other areas requiring improvement, though smaller adjustments are necessary, that I report as they appear in the submission. These are minor issues, that nevertheless need to be addressed. In the abstract, there is a claim for a” (…) 41% and 26% reduction in the number of infected healthcare workers at the hospital and nursing home.” These values are not present throughout the article, even though the overall simulations are presented. I would advise for consistency between abstract results and manuscript results. Lines 42-47, on contributions of the study, would be better placed on the discussion section. Line 53: the authors claim that, in case of an outbreak, an entire section of workers need to be quarantined. Does this not go against the idea of contact tracing, where only high-risk contacts are isolated, as explained in lines 31-32? Line 64: Participation of subjects is voluntary. There should be some comparison made between participants and non-participants, to understand whether the sample may be representative of the population or not. This is not even addressed in the discussion. Line 129: No explanation is given for the choice of the SIR-model for this infection. A small sentence would suffice. Line 170: While authors give estimations of previous studies, the rationale behind choosing 20% as the transmission probability for worker to worker is not given. Even if it may be because, within the interval 16-21%, 20% may be the easiest to analyze, that should be made clear. Line 174: No explanation for the assumption that workers may spread the disease for 4 days. Pre-symptomatic infectious period is usually considered to be 2 days, though at least one paper found a 3-day mean. Some reference is needed. Lines 218-226: Observing figure 6, why is the staff toilet not addressed in this section? Line 244: Overestimated appears to have been written instead of underestimated. Line 267-onwards: No sentence discussing the potential observation bias, as workers may have altered some of their routines based on being observed. This may even link with their will to participate,, affecting the study's representativeness. Even if authors regard it as negligible, as it may well be, it still should be discussed. Line 276: “Second, we did not install the sensors in all the offices and kitchens where some of the social interactions take place”. The supporting information provided does not clarify which kitchens and offices have senses, and whether they differ from other kitchens and offices or not. It is unclear how relevant this is – authors claim sensors were carefully located. I believe this could be further developed, and some consideration on representativeness should be present, as observed for worker’s participation. Line 286: Sentence ends without verb, it seems as if it ends in the middle. Figure 5 and 6 have the exact same label, though addressing different settings. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Analysis of social interactions and risk factors relevant to the spread of infectious diseases at hospitals and nursing homes PONE-D-21-07190R1 Dear Dr. Hüttel, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Florian Fischer Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #2: I Don't Know ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #2: (No Response) ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #2: The authors have addressed all corrections and suggestions. Title, objectives and conclusion are now coherent between them. Discussion is only slightly improved, yet that was the choice of the authors. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #2: No |
| Formally Accepted |
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PONE-D-21-07190R1 Analysis of social interactions and risk factors relevant to the spread of infectious diseases at hospitals and nursing homes Dear Dr. Hüttel: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Florian Fischer Academic Editor PLOS ONE |
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