Peer Review History
| Original SubmissionApril 29, 2021 |
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PONE-D-21-14170 Tree species identity and composition shape the epiphytic lichen community of structurally simple boreal forests over vast areas PLOS ONE Dear Dr. Klein, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jul 19 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Kind regards, Julian Aherne Academic Editor PLOS ONE Additional Editor Comments: I have received comments from four reviewers, all have noted the merit of your study and 3 of 4 have suggested minor revisions. I agree with this suggestion; nonetheless you are required to respond to the comments from all reviewers. Many of these comments refer to style, presentation, or clarification of written text; ultimately manuscript revisions in response to these comments will improve the impact of your manuscript. Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We noted in your submission details that a portion of your manuscript may have been presented or published elsewhere. "The data used in this article has been used also for this article: https://www.sciencedirect.com/science/article/pii/S0378112720310963 The data was however used to answer a very unrelated question, e.g. we used entirely different explanatory variables in this article. We therefore do not think this constitutes dual publication." Please clarify whether this [conference proceeding or publication] was peer-reviewed and formally published. If this work was previously peer-reviewed and published, in the cover letter please provide the reason that this work does not constitute dual publication and should be included in the current manuscript. 3. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly Reviewer #3: Yes Reviewer #4: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes Reviewer #4: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes Reviewer #4: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes Reviewer #4: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: overall this paper is well written and researched; I have just a few concerns, listed below some short detail justifying/explaining the sampling design would be nice; why E and W shifts only (e.g not also N and S?) I am a bit puzzled by the choice of sampling at the very base of trees, since here the soil can exert a strong influence: I see e.g. Cladonia rangiferina, a terricolous lichen, in the list; please provide reasons for such a choice and add a discussion on this issue why only the presence of the lichen species has been considered and abundance disregarded? please give support to the use of Bernoulli, normal and gamma distributions to estimate occurrence, gamma and beta diversity, respectively what is a lichen observation? a short paragraph with itemized conclusions based on listed aims would be nice please add a ref to species nomenclature followed in tab S1 Reviewer #2: This paper presents the results of a study on epiphytic lichen diversity in simplified boreal forest ecosystems. Among other aspects, the authors attempt to verify the relevance of tree species identity in determining the composition of epiphytic communities. The idea of the work is interesting and the reference dataset very robust. the statistical approach is also more than adequate. However, I have several observations that relate in some ways to the background of the work, its generalisability and the presentation of the hypotheses to be tested. Below are some detailed observations: In my opinion, the logical flow of the presentation of the work in the abstract should be constructed a little more clearly in order to make the reader understand the relevance of the subject matter. The authors begin by saying that simplified ecosystems are little taken into consideration, then they call into question an aspect that, in my opinion, seems to be linked to an increase in complexity in simplified forest systems (such as, for example, the presence/management of tree species that are more occasional than dominant). The context of the work is interesting but, at least in the abstract, a few more words should be spent to explain the presumed ecological processes that lead to the construction of the working hypothesis. L35: I don't know if I really agree with the statement in the first line (which is also the basis for the preparation of the work framework) that biodiversity studies are mainly done in natural areas. This is also linked to another (forgivable) weakness of the work, namely the bibliographic support that is very much oriented towards boreal situations (here I agree: it is the ecosystem to which the authors refer) and which neglects an important body of literature on lichenology, but not only, that deals precisely with the study of diversity in areas that are also deeply altered. I can think of dozens of works in this sense from the USA, boreal, temperate and Mediterranean Europe. Many of these use the same diversity descriptors as the article. I think that the authors, while obviously keeping the focus on their reference ecosystem, should make a greater effort to relate their results to what has been observed in other forest systems. This would considerably increase the interest of the work, in my opinion. L38. Although I can clearly see what the authors are referring to, I think a few more words should be spent on describing and defining these simplified ecosystems L46: I believe that for a large part of the world, 80-100 years is not such a young age (neither in terms of logging nor in ecological terms) for a forest system! L58: I’m sorry, but I think that epiphytic lichens are a 'heavily understudied' group seems to me to be a very strong and unsupportable statement. I follow the context, but in my opinion the hypothesis should be presented much more explicitly: first you refer to ecological processes (dispersal, competition, establishment of these lichens would come to mind then), afterwards you say you want to test on which tree species there are more of them. Of course, I'm all for that, but I don't see much analysis of the ecological process there. Methods: There are some aspects which, I imagine due to the need to simplify the sample design, seem to me to be somewhat neglected. The question of the tree species itself is resolved without, for example, taking much account of the physical and chemical characteristics of the bark or the structure of the tree as a whole. I do not seem to have seen any considerations related to the distance between trees or more generally to spatial connectivity within and between plots. L78-88. I understand that the various points are extremely connected, but 7 objectives for one job seems too many. Perhaps there is a risk of the reader losing the thread a little (I have lost it, sorry). Without necessarily abandoning them, I would make the hypothesis more synthetically clear and fluent and keep some of those points as methodological aspects or perhaps merge some of them. L255-258: I might well agree, but this statement is really very speculative and does not follow from the results presented. In general I find some parts of the discussion not really deducible from the observed results. L353: Perhaps, but not necessarily: the presence of a high number of species with low frequencies (thus 'rare' at least in the study area) is a rather well-known and widespread phenomenon and can be found in ecosystems at different stages of succession. Reviewer #3: This manuscript (PONE-D-21-14170) presents the results of the original research. The article is well written, discussion, and conclusions are made based on experimental data. The methodology is clear and sufficient. There are a few my specific comments that need to be addressed which will improve the research study: 1.Please should add the authors of all the Epiphytic lichen species in Table 1. . The scientific names of species should be italicized. 2.Line 268-270 in Discussion: “The finding of Arthonia vinosa on Scot’s pine is somewhat surprising as this is a signal species indicating species rich broad-leaved deciduous forests (Nitare,2019).” Marmor et al. 2011 studied epiphytic lichen biota on Picea abies and Pinus sylvestris in Estonia. They stated that Arthonia vinosa on Picea abies and Pinus sylvestris. You should also consider this article in the discussion. Marmor et al. 2011., Effects of forest continuity and tree age on epiphytic lichen biota in coniferous forests in Estonia. Ecological Indicators, 11, 5, 1270-1276. Reviewer #4: The global land area in wildernesses, i.e., ecosystems dominated by natural processes, has dramatically declined over the past 75 years, coinciding with an unparalleled growth in human populations. That change has created the biodiversity crisis and concerns that a sixth major extinction event is imminent. Thus, there is growing recognition that biodiversity must be protected globally. It is therefore relevant to ask how biodiversity can be optimized in managed boreal forests—a globally extensive biome. This manuscript offers some useful and new advice in this arena based on intensively measured data for epiphytic macrolichens from a forest stand representative of highly managed forests in Fenno-Scandinavia. Lichens are useful indicators of forest health and biodiversity--other works have demonstrated that management practices that promote lichen diversity are likely to promote diversity of at least some other taxa groups. The key new information demonstrated by the authors is that tree species diversity and evenness of that diversity promotes alpha and gamma diversity of lichens in forest stands. While this may not be good news for the timber industry —where the most economically valuable species are normally planted in higher proportions than less economically valuable species—it is useful information and likely to be of interest to managers of public forests and reserves, policy makers, and environmentally conscious timber producers. As expected, with longer forest continuity, represented by increasing trunk diameter, beta diversity evens out over time as slow to disperse species spread out evenly over the stand. Because of the value of this information to managers, and the relative uniqueness of the dataset, I believe the findings of the authors deserve publication. However, I truly hesitate in my recommendation as the prose is inordinately difficult to understand. It is not a matter of grammar or familiarity with the English language, that is all fine. Rather it is a tendency toward verbosity and a practice of packing each sentence with so many words that this reader consistently had trouble fathoming sentence meaning. A reader should not have to read sentences multiple times to understand them. Further, I cannot see forest managers having the patience to read it. It is a funny thing—I recall my outrage in the film ‘Mozart’ when Emperor Franz explains that Mozart has used too many notes and that the listener cannot hear that many—therefore the composer should simply take some out. In this case, my recommendation is literally the same—except I mean words instead of notes. With more concise prose, this manuscript will be understandable to a much broader audience. Please find some examples of improved prose in the edited ms. This is not a complex dataset or analysis-- there is no reason for the ms to be difficult to understand. And, I do hope the authors will not share Mozart's outrage at my advice. As I recall, Mozart gauged his emperor to be an imbecile. A last request. I had some trouble following the myriad terms in the methods section associated with the Bayesian modeling and this is why I am not confident in my ability to fully assess the statistical analyses. Perhaps a sentence or two describing the meaning of the word 'prior' and the significance of the different kinds of priors would help those readers who are not Bayesian experts. Revision of the figure and table descriptions is also needed, again the prose is hard to understand. Once I figured out the meaning of the text, I found the tables and figures relevant and useful. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No Reviewer #4: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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Tree species identity and composition shape the epiphytic lichen community of structurally simple boreal forests over vast areas PONE-D-21-14170R1 Dear Dr. Klein, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Julian Aherne Academic Editor PLOS ONE Additional Editor Comments (optional): Well done. The revised manuscript fully addresses all comments from the four reviewers. I find it acceptable for publication. Thank you for your thorough submission. Reviewers' comments: |
| Formally Accepted |
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PONE-D-21-14170R1 Tree species identity and composition shape the epiphytic lichen community of structurally simple boreal forests over vast areas Dear Dr. Klein: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Julian Aherne Academic Editor PLOS ONE |
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