Peer Review History
| Original SubmissionApril 20, 2021 |
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PONE-D-21-13059 Saffron extract attenuates neuroinflammation in rmTBI mouse model by suppressing NLRP3 inflammasome activation via SIRT1 PLOS ONE Dear Dr. Borjac, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jul 17 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Faramarz Dehghani Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2.Thank you for stating the following financial disclosure: "Disclosure statement uploaded." At this time, please address the following queries:
Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 3.PLOS ONE now requires that authors provide the original uncropped and unadjusted images underlying all blot or gel results reported in a submission’s figures or Supporting Information files. This policy and the journal’s other requirements for blot/gel reporting and figure preparation are described in detail at https://journals.plos.org/plosone/s/figures#loc-blot-and-gel-reporting-requirements and https://journals.plos.org/plosone/s/figures#loc-preparing-figures-from-image-files. When you submit your revised manuscript, please ensure that your figures adhere fully to these guidelines and provide the original underlying images for all blot or gel data reported in your submission. See the following link for instructions on providing the original image data: https://journals.plos.org/plosone/s/figures#loc-original-images-for-blots-and-gels. In your cover letter, please note whether your blot/gel image data are in Supporting Information or posted at a public data repository, provide the repository URL if relevant, and provide specific details as to which raw blot/gel images, if any, are not available. Email us at plosone@plos.org if you have any questions. 4. We note that you have included the phrase “data not shown” in your manuscript. Unfortunately, this does not meet our data sharing requirements. PLOS does not permit references to inaccessible data. We require that authors provide all relevant data within the paper, Supporting Information files, or in an acceptable, public repository. Please add a citation to support this phrase or upload the data that corresponds with these findings to a stable repository (such as Figshare or Dryad) and provide and URLs, DOIs, or accession numbers that may be used to access these data. Or, if the data are not a core part of the research being presented in your study, we ask that you remove the phrase that refers to these data. 5. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. Additional Editor Comments: Dear Dr. Borjac, I have now received the comments of the reviewers and agree with their points of criticism. Please conduct the suggested experiments and revise your manuscript accordingly. Furthermore, the presentation of gels in the supporting information (raw images) must be improved. Please add the molecular weights of markers and the labelling for the investigated groups in a unique way. Please recheck again the labelling of all protein bands as there are some mistakes. As an example in NLRP3 original gel saffron sham and sham do not match to the labelling in figure 4. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The current paper presents data supporting the hypothesis that saffron, with its complex chemical composition, may cope with neurodegeneration induced by TBI. The initial event is always multifactorial but oxidative stress plays a pivotal role at various levels including the activation of neuroinflammatory pathways. Saffron acts at different levels directly as an antioxidant but also by regulating many genes and protein synthesis. -Although the topic addressed in this submission is of potential interest, my initial evaluation is that the manuscript is not ready for consideration. Among the overarching concerns, the statistical analysis lacks sufficient detail, testing whether interaction effects between groups for the various outcome measures are significant. The results for the interaction terms in the overall ANOVAs are important to confirm that the effects on the various outcome measures of interest are in fact saffron-dependent, as the report implies. - the most biologically active components are two carotenoids including crocin and crocetin. Most of the pharmacokinetic studies are related to these compounds. An open problem is to understand how saffron metabolites reach the CNS after i.p. application, is this a passive transcellular diffusion or an active one? - It is not clear from the materials and methods which dose/volume of Saffron-Extract was i.p injected. It is mentioned on page 4 …the dose of the saffron extract used in this study was based on previous studies 32, 33??? - Neuronal severity score: why the data are not shown? - The data concerning effects of saffron on body weight are amazing. in Hits 1 and 2, the differences between Sham/saffron sham and TBI are not significant, however they are significant in Hits 5, 6 and 7. How to explain that TBI group failed to maintain normal body weights and Saffron-TBI mice were able to gain weight. Is this due to the injury or to saffron. One can be assumed that injured mice have motoric difficulties to food-access. Fig. 2: Hit1 TBI- 35 vs TBI+Saffron 32 this difference is not significant- Hit5: TBI approx. 32- TBI+Saffron 31 this difference is significant (p< 0.0001). Is it quite difficult to understand this statistic interpretation? The same remark for Hits 6 & 7. - the weight differences are in the gram range; it cannot be ruled out that the edema could play a role. While Brain edema is a severe complication of TBI. The accumulation of intracellular water, especially in the perivascular astrocytes, disrupts the local osmotic environment, resulting in or aggravating the breakdown of the BBB. - Fig. 3: Authors stated that saffron extract reduces neuronal damage, astrocyte’s proliferation and microglial activation which are TBI-mediated. This analysis has been done only on proteins-levels by WB. It should be emphasized that the increase in GFAP- NeuN- and Iba1-Levels does not mean automatically glia-proliferation, neuronal-protection and microglia-activation! These changes may indicate only alterations in protein-levels and not inevitably changes in the density of astrocytes, neurons and microglial-cells. Morphological data are needed in order to show that saffron reduced the TBI-mediated astrogliosis, neuronal damage and microglia activation. Furthermore, recent studies investigating neurodegenerative diseases reveals that neuroinflammation in the CNS induces the activation of two different paradigm of reactive astrocytes, termed A1 and A2. Notably, astrocyte reactivity is disease- and stimulus-dependent, adopting either a cytotoxic A1 phenotype or a neurotrophic, anti-inflammatory A2 phenotype. This point might be discussed. How to explain the significant increase in NeuN-levels in the TBI-group comparing to sham-group on Fig. 3? If TBI induced neuronal injury, we should expect a decrease in neuronal density and consequently a reduction of NeuN-protein-levels! -From Fig. 6: SIRT1- was significantly increased in TBI comparing to sham, but instead of normalization, we see a potentiation of SIRT-1 levels in saffron-TBI-Group. This is an interesting finding which needs a confirmation by using pharmacological inhibitors of saffron-uptake. The same evolution concerns NRF2 and Hmox1 on mRNA-levels on Fig. 7. Here, why the data show only mRNA- and not protein-levels. Reviewer #2: The manuscript, was found to be interesting on the exploring the anti-neuro-inflammatory effect of aquas (polar) extract if the authors would have explained on mode of action on the base of compound level in the saffron extract , it will be more interesting and information on compound level For example , at least partial purification based such as either it is a protein or peptide or either it is a polyphenol based compound it will be much more informative on the effect of the extract. In efficacy and durability of the anti-neuroinflamatory property depends on the nature of the compound present in the saffron extract. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-21-13059R1 Saffron extract attenuates neuroinflammation in rmTBI mouse model by suppressing NLRP3 inflammasome activation via SIRT1 PLOS ONE Dear Dr. Borjac, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== ACADEMIC EDITOR: Please insert comments here and delete this placeholder text when finished. Be sure to:
Please ensure that your decision is justified on PLOS ONE’s publication criteria and not, for example, on novelty or perceived impact. For Lab, Study and Registered Report Protocols: These article types are not expected to include results but may include pilot data. ============================== Please submit your revised manuscript by Sep 04 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Faramarz Dehghani Academic Editor PLOS ONE Journal Requirements: Additional Editor Comments (if provided): Dear Dr. Borjac, As you may notice, one of the reviewers was no longer available for judging the revised version of your manuscript. Therefore, the paper has been sent out to reviewer 3 who has raised additional concerns. The detailed suggestions are included below. Both reviewers ask extensive language editing. Please address the points of criticisms mentioned by the reviewers. Your work will be considered for a re-evaluation. With best regards, Faramarz Dehghani [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #3: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #3: No ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #3: No ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #3: No ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Given financial problems as a reason for not having done this or that experiment is not logical in the scientific world. It is always possible to do so in a collaborative framework. In any case, one should never hesitate to ask for help elsewhere from colleagues who have the expertise and the means. I am willing to do it for you, but it seems that the authors are eager to see their paper published. In any case, the authors have taken my criticism into consideration, which collectively improve the quality of the manuscript. Reviewer #3: The manuscript “Saffron extract attenuates neuroinflammation in rmTBI mouse model by suppressing NLRP3 inflammasome activation via SIRT1” by Shaheen et al. describes a potential neuroprotective effect of saffron extract. The authors describe a mouse model of traumatic brain injury and use qPCR and Western blot densitometry to follow marker genes and proteins that are upregulated upon brain injury. The authors potentially find protective effects of saffron upon traumatic brain injury. The manuscript needs considerable proofreading and editing, which should not be the responsibility of a reviewer. Under no circumstance a manuscript should be send for revision in such condition, please send the manuscript to a native speaker or at least use spellchecking before submission. I will anyways try to list typos and editing issues: 47: insert space between 1 and ( 79: insert space between (PRRs) and (9). 85: linked to the sirtuins should be to the sirtuin protein… 92-93: please check the sentence, it doesn’t make sense to me 104: sentence should be crocin is enzymatically deglycosylated… 107: BBB is mentioned for the first time, please described what it is (I guess the blood brain barrier) 108: insert space (23) The… 120-130: copy paste issue with different font size 125: …and the Canadian…(smaller size) and which of the experiments were performed in Canada? 128: anesthetizing is italics 273: …used as reference genes should be protein 312: should be mRNA fold change… 326: the expression levels (delete of) 333: …did not induced should be did not induce 334: change in their levels should be change in transcript level 341: …translational level not levels 369: mRNA expression should be mRNA levels 375: Our results shows should be show 376: compared with should be compared to 379: a protective role of saffron (delete play and insertof) 398: use target instead of aim 405: delete “anesthetized mouses brain” and write mouse head, left free to move… (you did not sedate the mouse brain, neither did you drop the weight on the mouse brain) 408: delete significantly (this is only used when statistics were performed) Despite the formalities, the authors need to address several critical points: - a detailed description of the saffron extract injected. What exactly did the authors inject? The aqueous 2% solution, the freeze dried precipitate or the re-solubilized freeze dried precipitate? Please try to be more clear in the description. Most ingredients in saffron won’t be water soluble, please discuss this in order to allow speculation which chemical substance in saffron might be responsible for neuroprotection. - In Figure 2, I cannot see any label of the Y-axes (I guess this should be gramme (g)). The graph is not very straight forward and should be presented as body weight increase (Y) per time on X-axes. You can indicate the time of hit 1 and so on. Like this it looks like the hits lead to change in bodyweight. This should be presented as curves not as bar graphs. I am also confused by the statistics, from the graph it looks to me that there is absolutely no difference e.g. Hit7 TBI vs Saffron TBI. You show a significant change anyways!? - 268: You write about anti-tubulin activity of saffron components. Please explain what you mean! As a biochemist, activity is reserved to enzymes, saffron is not an enzyme. Also what is anti-tubulin activity, does it interfere with polymerization, depolymerization, interferes with modification,… - In Figure 3 it is unclear which band was quantified in the NeuN blot, there is a clear double band in the Sham and Saffron Sham but not in TBI. Which band did you use for quantification and how do you know which one is NeuN? Why is it not present in the TBI sample? - Similarly, in Figure 6C it is unclear which band is SIRT1 and which one was used to quantify. The original blots should be presented without cropping in a supplementary figure. - How do you explain an upregulation of SIRT1 only in TBI brains but not in Saffron sham mice. The effect seems not dependent on Saffron. Please discuss this further. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Saffron extract attenuates neuroinflammation in rmTBI mouse model by suppressing NLRP3 inflammasome activation via SIRT1 PONE-D-21-13059R2 Dear Dr. Borjac, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Faramarz Dehghani Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #3: I Don't Know ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #3: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #3: All comments have been adressed and the manuscript has improved accordingly. The manuscript can be processed for publishing. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #3: No |
| Formally Accepted |
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PONE-D-21-13059R2 Saffron extract attenuates neuroinflammation in rmTBI mouse model by suppressing NLRP3 inflammasome activation via SIRT1 Dear Dr. Borjac: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Faramarz Dehghani Academic Editor PLOS ONE |
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