Peer Review History
| Original SubmissionMarch 22, 2021 |
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PONE-D-21-09490 Dengue pre-vaccination screening test evaluation for the use of dengue vaccine in an endemic area PLOS ONE Dear Dr. Srisawat, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised below during the review process. Please submit your revised manuscript by Jul 19 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Ray Borrow, Ph.D., FRCPath Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: No ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Major issues: A major part of flavivirus serology is unfortunately exclusion diagnostic. Therefore informative specificity analyses should include non-DENV samples, especially in a JEV endemic country as JEV is know to cause cross-reactivity in antibody tests (ZIKV should be considered too). It would be beneficial to provide the JEV-serology status of the study participants and/or their JEV vaccination status. Indeed, the authors discussed briefly potential cross-reactivity. However, the argument, that positivity in DENV PRNT indicates solely DENV reactivity is incorrect. Cross-reactivity among flaviviruses can also be seen in neutralization assays (especially after recent infection or vaccination). Therefore, testing against multiple flaviviruses and determining if the antibody titers differ significantly is the only option to draw definite conclusions. If the authors cannot provide these information, they should at least discuss the possibility of cross-reaction in more detail, especially in children (probably likely vaccinated against JEV). The authors should provide more information on the serology results obtained with the various assays (especially the NS1, IgM/IgG RDT) as these are useful information to further characterize the study cohort. How many individuals where acute DENV-infected (vs how many convalescent), how many showed only IgM or IgM+IgG (primary vs secondary?)? Even better performance makers than sensitivity and specificity are the positive and negative predictive values, especially when considering an assay for a specific application like pre-vaccination screening. It is great that the authors considered that. They could discuss these parameters when the DENV prevalence is higher then observed in this study. As mentioned by the authors, there seem to be regions in Thailand which higher prevalence. Would this affect their recommendation regarding the use of these assays for pre-vaccination screening? Minor comments: Line 54: the unit (NT50 or PRNT50) for the geometric mean antibody titer is missing. Also, be consistent by using only NT50 or PRNT50 describing titers and NT or PNRNT indicating the assay itself. Be consistent on what WHO SAGE recommendation you refer to (reference no 4 from July 2016 used in introduction [line 75] or reference no 17 from September 2018 used in discussion [line272]). I'd recommend using the most recent one. Line 110: correct to degree Celsius (℃) Lines 144 and 256: Lübeck (umlaut diacritics can be typed by using first " followed by the vowel) Line 163: indicate if you used different programs for the statistical analysis (SPSS) and the preparation of the plots/figures (looks like GraphPad) Line 201: clarify what you mean by 'the ten thresholds' Line 234: 'and' is doubled Lines 248-249: correct sentence (e.g. 'shown by PRNT50') Lines 249-250: correct sentence (e.g. 'was found to increase with age') Lines 250-252: clarify why older individuals in this cohort were likely infected with DENV-1 before exposure to another DENV serotype. Reference to surveillance data would be helpful. Line 253: 'Thai individuals' instead of 'Thais individuals' Line 271: areas, regions or scenarios might be a better expression than 'scenes' Line 278: clarify that you describe the assay sensitivity towards IgG (as the RDT can also measure IgM and NSI) Lines 307-309: correct sentence as both parameters regard to rural settings which does not fit the argumentation Lines 309-310: correct sentence (might delete or re-position 'with age') Lines 327-329: clarify/simplify sentence to get your argument across Reviewer #2: The idea is great. However, you have to design the experiment in a proper way to serve your goal. This manuscript might be considered for publication if you do all the analysis again in a proper manner. My main concerns are: 1- PRNT assay: You have to include proper virus strains in your experiment. There is data available for the strains you used, the passage number and the cells that you grew the virus. You must include titer for this experiment and also please add proper positive and negative control. Also, the way that you analyze the data for this experiment seems confusing. I added an article in the manuscript as an example of way that you can properly calculate the NT50. If possible, I would like to see the raw data for this assay. 2- The data analysis for ELISA assay also seems confusing. I would like to see the method that you used to obtain 20 relative unit/ml. Is it a standard number in the instruction of the kit? 3- In 3 assays, I could not be able to see the dilution factor for the serum samples. Are they the same for all the experiments? 4- Any strategy for discriminating false positive or false negative in the commercial kits? I know some labs are using some techniques like qPCR to verify the data? 5- Review of the discussion is pending and it must be done based on your new results and graphs. I included some minor revisions in the manuscript but first of all, you must correct the analysis or clarify the present analysis to continue with your manuscript. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Heidi Auerswald Reviewer #2: Yes: Touraj Aligholipour Farzani [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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PONE-D-21-09490R1 Dengue pre-vaccination screening test evaluation for the use of dengue vaccine in an endemic area PLOS ONE Dear Dr. Srisawat, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the last points raised below during the review process. Please submit your revised manuscript by Sep 10 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Ray Borrow, Ph.D., FRCPath Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #2: Thank you very much for your precise responses. You addressed almost all my concerns. After some minor revisions, this manuscript is ready to be published. 1- I added some minor recommendations in the manuscript. 2- Please send the manuscript for English editing. 3- You can make the discussion more better. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Heidi Auerswald Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 2 |
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Dengue pre-vaccination screening test evaluation for the use of dengue vaccine in an endemic area PONE-D-21-09490R2 Dear Dr. Srisawat, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Ray Borrow, Ph.D., FRCPath Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-21-09490R2 Dengue pre-vaccination screening test evaluation for the use of dengue vaccine in an endemic area Dear Dr. Srisawat: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Prof. Ray Borrow Academic Editor PLOS ONE |
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