Peer Review History
| Original SubmissionApril 1, 2021 |
|---|
|
PONE-D-21-10438 Modelling the effects of the repellent scent marks of pollinators on their foraging efficiency and the plant-pollinator community PLOS ONE Dear Dr. Verrier, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Specifically, the reviewers raise important points both about the underlying assumptions of your models and the ecological implications of your results, and both of them need to be carefully addressed in a revised submission. Please submit your revised manuscript by Jul 10 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Ricardo Martinez-Garcia Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We note that you have stated that you will provide repository information for your data at acceptance. Should your manuscript be accepted for publication, we will hold it until you provide the relevant accession numbers or DOIs necessary to access your data. If you wish to make changes to your Data Availability statement, please describe these changes in your cover letter and we will update your Data Availability statement to reflect the information you provide. 3. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: See attached file.......................................................................................... ............................................ ............................................ ............................................ ............................................ Reviewer #2: The paper studies the influence of repellent scent marks on the foraging efficiency in a group foraging setting. The authors provide an agent-based model, modeled after honey- and bumblebees, where recently visited flowers were less attractive to foragers due to the presence of a previously deposited repellent. The authors provide an excellent sensitivity analysis that highlight critical parameters that most strongly influence the evaluated metrics. By varying these parameters, they provide results on the effect of the level of competition on (group) foraging efficiency, remaining resources in the resource patches, and the total number of visits per patch. Since foraging has an associated cost, i.e. handling time, the authors show that the use of repellent marks can increase foraging efficiencies in (highly) competitive systems. In contrast, repellent marks reduce the total number of visits per flower. As a result, the study has potential implications regarding pollinator systems (pollination service) that use the repellent scent marks. While the results are very interesting, and the possible contrasting connection between high foraging efficiency and pollination services has potentially widespread implications, I believe the authors should: - more strongly argue the reasons for specifications in their agent-based model (e.g. defend the choice of flower distribution, foraging cost, range of pollinators versus flowers, the random search, etc) - provide more details on the effects the studied variables on the reported metrics (e.g. amount of nectar per flower visit, the impact of foraging cost [but see comment 3], etc ) - more thoroughly discuss the impact of their interesting results on pollination services MAJOR COMMENTS: --------------- 1. The main goal of the authors is to display an apparent mismatch between optimal foraging strategies (the use of repellent scent marks) and the pollination service (number of visits per flower). However, other than illustrating this mismatch, I believe the study lacks a more thorough discussion on potential reasons and implications of this result. The authors only argue (in their Discussion) that this highlights the importance of taking diversity into account. With this, I am lead to believe that they most likely mean to state that different species of pollinators do not consider heterospecific scent marks. As a result, do the authors suggest that flowers that might contain a small amount of nectar are still visited by other pollinators? Or do the authors imply that pollination service can (potentially) be artificially controlled by modifying repellent scent marks? Otherwise, I see no advantage of decreased number of visits per flower for pollination service. I believe the work would benefit from a more thorough discussion on the exact implications of their results, in light of the conclusion the authors aim to derive. 2. The authors report on foraging efficiencies, which is defined as the average amount of resources (nectar) consumed by each individual agent. In their random forest analysis, they provide influences of specific parameters, and conclude that the number of (discrete) steps highly increases the mean nectar quantity collected. However, the impact on the total amount of nectar collected obviously depends on the total time foraged; this is no surprise. Instead, I believe the authors should report on foraging efficiencies that consider nectar intake either per distance traveled, as is frequently done in foraging literature (see Viswanathan et al (1999), Bartumeus et al. (2005), among others), or per time unit. This way, the foraging efficiency becomes (approximately) independent of the total duration of the experiment, but this still depends strongly on the other measures such as the cost of foraging, regeneration rates, etc. 3. The authors mention that the time (cost) associated with flower exploitation depends strongly on flower complexity. They provide supplementary results on the effect of this cost on the total amount of nectar collected. Interestingly, systems that use repellent scent marks provide higher (albeit slightly) nectar intake than systems that do not use these marks. This effect appears to be largest when nectar regeneration rates are high (Fig. S2.2). Most interestingly, these results are obtained at a low number of pollinators (agents) per flower. This highly interesting result already displays the benefits of repellent scent marks for (more) complex flower systems, but the authors decided to provide this information only in the supplementary material. I believe this result is critical, and provide more insight into the effect of repellent scent marks than the authors might think. Therefore, I believe that it should be moved (and should have an accompanying discussion) to the main body. 4. The authors discuss the effects of increased levels of competition, expressed by the number of available foraging sites compared to the number of foragers. However, I would argue that the system should not be inherently "competitive", since individual bees are part of a "collective" system. I agree with the authors that the collective as a whole would benefit from having the agents not spend much time in foraging sites with little resources. But the coefficient of variation loses its meaning in a collective context, as the goal of individuals is not to maximize their own resource intake, rather to aid the collective in maximizing the group foraging efficiency. Therefore I believe that the coefficient of variation is not an informative metric to be used in this setting, unless it is used to explain possible increases in the (average) group efficiency. Unfortunately, other than mentioning the coefficient of variation, a more thorough explanation on why the coefficient of variation affects group foraging efficiencies is missing. 5. Similarly, the fact that the authors consider a competitive system reflected in the definition of foraging efficiency as the mean resource intake. I would argue that the total amount of nectar (i.e. the sum over all individuals) is more appropriate in this setting, not the average intake. Do note that the average has much added value, but if, for example, repellent scents ensure a subset of the collective to forage much better, the collective as a whole can already benefit. I believe it would therefore be appropriate if the authors more clearly argue why they study the particular metrics, and how they apply to (i) collective systems, or (ii) more competitive pollinator systems. 6. The authors study the amount of remaining resources (nectar) on the foraging sites (flowers) after the foraging task has ended. Surprisingly, the nectar remaining on the flowers is higher when agents use repellent scent marks. While the authors nicely identify that the variation in nectar remaining remains low in this case, it is unfortunate that the authors do not provide more details on this very interesting result. From Fig. 4 alone, I would conclude that the use of scent marks decreases the efficiency of resource usage, simply because more resources are left unused. However, from the Discussion (line 285-293), the authors mention "an optimization of nectar resources". I am confused by this apparent discrepancy. Why is it precisely that the foraging is more efficient, yet the remaining amount of nectar in the flowers is higher? 7. The number of visits per flower for the different strategies is studied by the authors. Unsurprisingly, when repellent scent marks are absent, there is no change. This is reflected by the overlapping lines in Fig. 5A. Also unsurprisingly, the total number of flower visits is smaller in systems that do contain these repellents. However, while Fig. 3 displays an increase in the foraging efficiency, the authors do not provide data on the total resources (nectar) obtained at each flower visit. Obviously, for the foraging efficiency to increase, the amount of nectar obtained when a flower is visited must be higher. It would be nice if the authors can show that this is indeed the case, and perhaps link this with the previous comment on the remaining amount of nectar after foraging has finished. Minor comments: --------------- 1. In their model, scent marks and nectar quantity are updated linearly. However, the authors provide no sources for this type of growth. Furthermore, while the authors assume that foraging on the flowers is probabilistic, it has been shown that it is more likely to be a binary decision, i.e. after a fixed time length, the flower will be visited again (see e.g. Stout, Goulson (2001), Nauta (Int. Conf. on Swarm Intelligence 2020), Hrncir et al. (2004)). While the effect of this will most likely be minimal, it would be beneficial to the quality of the work if the authors could discuss their choice of linear growth or decay in the light of existing works. 2. The random search of the agents is defined by a change in travel angle, sampled from a Gaussian. The authors perform a sensitivity analysis, and choose a specific value for the standard deviation, while the mean is 0. While the likelihood of sampling changes in travel angles more than 2π radians is slim, this is still possible due to there being no truncation. Moreover, the model resembles the Correlated Random Walk (CRW), which has been extensively studied to model random searches (see e.g. Bovet, Benhamou (1988), Bartumeus et al. (2005), Nauta et al. (Royal Society Interface 2020)). While I would argue that the effect on the results would be minimal due to the choice of standard deviation, I believe the authors should more strongly defend their choice of the random search, or consider (slightly) more realistic random walks such as the CRW. 3. Pertaining to the choices of pollinators per flower, I believe it would be beneficial if the authors could report on observed values in natural systems. If, for example, the number of pollinators per flower is observed to be much smaller than 1, then the use of repellent signals decreases foraging efficiency, and the main hypothesis of the paper should be revised. Therefore, I would advise the authors to strengthen their results with empirical observations (if available), which further increases the implication of the work. 4. In the Discussion, the authors devote a paragraph to discussing generalism and learning. They conclude that pollination services can potentially be increased by diverse pollinator communities that express more heterogeneity. However, this paragraph feels out of place, as they have not discussed learning in any other context in their study. While learning obviously has its place in foraging, I believe the authors should provide more details on the link between learning, generalism and their hypothesis that more diverse pollinator communities can provide better pollination services. 5. The authors report on the precise implementation details in the main body. These details are better suited to be included (and they are!), and should not be included in the main body. Additionally, while it is most likely a subjective matter, I believe citing the Python language and (extremely) widely used libraries is not necessary, especially not within the main body of the text. If the authors desire, I believe it is no problem to include them in supplementary material. 6. While the quality of the language throughout the document is high, while still remaining very clear, some sentences (or structures) slightly suffer from repetition or strange word choice. Examples of these sentences (and possibly, suggested changes): line 50-58: First two sentences are essentially repeated by the last two. line 97: "environmental space" --> "environment" line 114: "foraging journey" --> "foraging duration" line 115: "toroid meadow" --> "environment" Minor typos: ------------ line 164: "Sensibility" -> "Sensitivity" line 287: "sent" -> "scent" Suppl. material, line 30: "... for our problematic." --> "... for our problem." Figures: In general, I believe that the figures will benefit from inclusion of a legend, instead of providing figure details in the caption. Additionally, perhaps different linestyles (and filled/unfilled markers) can provide a more clear distinction between the different curves. Finally, but this is perhaps subjective, explicitly mentioning what the x-axis represent is often unnecessary as it is clear from both the text and the x-label. Fig. S2.2 appears to times. The figure on the effect of cost should be relabeled to Fig. S2.3. REFERENCES: ----------- Viswanathan GM, Buldyrev SV, Havlin S, Da Luz M, Raposo E, Stanley HE. (1999), Optimizing the success of random searches. Nature 401(6756):911. https://doi.org/10.1038/44831 Hybrid foraging in patchy environments using spatial memoryJ Nauta, Y Khaluf, P Simoens Journal of the Royal Society Interface 17 (166), 20200026 Bartumeus, F., da Luz, M.G..E., Viswanathan, G.M. and Catalan, J. (2005), ANIMAL SEARCH STRATEGIES: A QUANTITATIVE RANDOM‐WALK ANALYSIS. Ecology, 86: 3078-3087. https://doi.org/10.1890/04-1806 Memory Induced Aggregation in Collective ForagingJ Nauta, P Simoens, Y Khaluf International Conference on Swarm Intelligence, 176-189 Bovet, P., Benhamou, S. (1988), Spatial analysis of animals' movements using a correlated random walk model, Journal of Theoretical Biology, 131-4: 419-433. https://doi.org/10.1016/S0022-5193(88)80038-9 Stout, J.C., Goulson, D. (2001), The use of conspecific and interspecific scent marks by foraging bumblebees and honeybees. Animal Behavior, 62-1: 183,189. https://doi.org/10.1006/anbe.2001.1729 Hrncir, M. Jarau S., Zucchi, R., Barth, F.G. (2004), On the origin and properties of scent marks deposited at the food source by a stingless bee, Melipona seminigra. Apidologie, 35-1: 3-13. https://doi.org/10.1051/apido:2003069 ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
|
| Revision 1 |
|
Modelling the effects of the repellent scent marks of pollinators on their foraging efficiency and the plant-pollinator community PONE-D-21-10438R1 Dear Dr. Verrier, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Ricardo Martinez-Garcia Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: N/A Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Overall, the authors addressed the last comments appropriately. My only last minor concern is regarding the meaning of the word "view_radius" in Fig.S2.2, which I think is not intuitive nor described. Reviewer #2: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Pau Capera-Aragones Reviewer #2: No |
| Formally Accepted |
|
PONE-D-21-10438R1 Modelling the effects of the repellent scent marks of pollinators on their foraging efficiency and the plant-pollinator community Dear Dr. Verrier: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Ricardo Martinez-Garcia Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .