Peer Review History
| Original SubmissionJune 8, 2021 |
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PONE-D-21-18896 PyPlutchik: visualising and comparing emotion-annotated corpora PLOS ONE Dear Dr. Vilella, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. We had trouble finding a second reviewer, so please respond carefully to the suggestions of the very comprehensive review that we were fortunately able to secure. Please submit your revised manuscript by Aug 22 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Danforth Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Summary: The authors introduce a Python module called PyPlutchik, which is built on top of popular plotting library MatPlotLib and provides an array of functions for visual representation of emotions in a circumplex, inspired by the infographic design by Robert Plutchik often cited in textual affect research. The authors provide ample evidence of the need within the Natural Language Processing community for a code implementation of this historically important graphical representation of affect, and include additional features to their module which show promise for more advanced and novel incarnations of the Plutchik wheel of emotions. In particular, the authors highlight the spatial relationships of the circumplex as integral to representation of semantic adjacencies and dichotomies; expand upon the notion of complex multi-faceted emotional affect, which greatly improves representation of nuance over singular categorizations for large corpora; and provide users with a range of options from simplistic representation to much more complex representations and small multiples, indicating that the authors have anticipated a range of research use cases. The authors demonstrate a steadfast commitment to the legacy of the original Plutchik Wheel (e.g. in choice of color and spatial orientation), but could perhaps benefit from a deeper acknowledgement of the critiques to the circumplex model in the broader research community since its inception. The graphics generated by the module demonstrate a careful attention to detail and commitment to visual clarity by the authors. Overall, the paper excels in its presentation and substance of scientific contribution, but there are a few necessary areas for revision that should be addressed before publication, particularly with the accompanying code and the implementation of dyadic visualization; and some minor suggestions that will likely be addressed during proofreading or are simply recommendations to possibly benefit from rewording for clarity. Necessary areas for revision: The introduction should include more context on the circumplex model of emotion cited in [52], specifically introducing the phrasing of a ‘circumplex’ to the paper rather than leaving that verbage in the bibliography. “Emotion circumplex” is a very common bigram in this area of research. p.3: Citing the number of Google Scholar results is inappropriate for a scholarly journal, as word/phrase frequency is not indicative of importance on its own, and documents included on Google scholar extend beyond peer-reviewed scholarly research. This reviewer is in agreement that this tool is a meaningful and useful contribution to the scientific community, and the specific cited papers’ usage of alternative plots in section 2 is a convincing display of need, but the mention of the search method for finding those papers is unnecessary and the total paper count is an unreliable measure. Github repository should include: dependencies.txt Example code shown on p.7-8 Some descriptions of implementation detailed in the paper should be removed from the paper and instead included in the module documentation, giving priority to discussion of the visual representation and affect model, rather than minutiae of implementation (this will also help to ‘future-proof’ work, as it is easier to update a Readme in a repository when changes arise in dependencies, than to update the code a published paper) Document line 269 (page 7 code line 2): from matplotlib.pyplot import plt should be import matplotlib.pyplot as plt this is a discrepancy between Python 2 and Python 3 wherein Python 3 no longer supports implicit imports code line 3: ‘nrow’/‘ncol’ should be pluralized (‘nrows’/‘ncols’) per matplotlib documentation here: https://matplotlib.org/stable/api/_as_gen/matplotlib.pyplot.subplots.html It should be noted that other NLP methods such as the “valence/arousal” measure do not align precisely with the Plutchik categories. It would appear, then, that using NLP libraries which categorize emotions based on the valence/arousal axes would be visually skewed by PyPlutchik not because of their content, but because of the measure used. This is a critical point to note in the paper and address explicitly. Fig 13 / SemEval discussion: Please include code for these plots in the GitHub repository. In particular, the data pipeline from SemEval to the dyad plots is unclear, and makes it difficult to answer this reviewer’s question: Why are all the dyad values so negligibly small? It seems increasingly challenging to evaluate minute differences in affect between Plutchik plots when the maximum value, for example in Fig. 13 (v), is 0.03 and the corresponding plot area takes up only a few pixels. This appears to demonstrate either an issue in the data processing, a need to reconsider scaling when all values are miniscule (just as line plot axes are adjusted in range to fit the data shown, perhaps values should be normalized by the maximum value for all categories prior to plotting), or some combination of both. Suggestions: It seems that “module” would be a more appropriate term than “library” for all instances of “PyPlutchik Library” in the abstract and paper: https://dev.to/hamza/framework-vs-library-vs-package-vs-module-the-debate-3jpp line 49: “This score can be interpreted as a binary flag that represents if emotion i was detected or not” - if i is in a range between 0 and 1, this is not a binary flag. Binary flags are booleans: 0 OR 1, not a float between 0 and 1. This language should be changed such that i corresponds to 8 emotions and Σ ia,b,c (where a,b,c, correspond to the 3 levels of intensity) is less than or equal to one. From the code, it does not appear true that “all emotions in a branch must sum to 1”, only that their sum must be less than or equal to 1. Line 62: “for instance, it is respected also in user interfaces displaying Plutchik’s emotions” please cite Line 91: “the exploitation of relationships among different artworks” - the phrasing here is confusing. By exploitation do you mean exploration? What is meant by ‘artworks’? Line 93: Is it true that ManyEyes supported interactive visualization? This reviewer had not personally used the tool before its discontinuation, but this article specifically mentions lack of interactivity support: https://boostlabs.com/blog/ibms-many-eyes-online-data-visualization-tool/ General question for section 2: Is the inclusion of ManyEyes relevant, given its discontinuation? What about other existing tools for visualization such as Tableau, Plotly, MatPlotLib, Bokeh, Shiny, D3, or DataWrapper, to name a few? Tools currently in use seem like more relevant STAR benchmarks for discussion. Section 2: Table 1 would benefit from accompanying representation of the original Plutchik emotion circumplex, e.g. https://www.researchgate.net/profile/Gerardo-Maupome/publication/258313558/figure/fig1/AS:297350959517696@1447905401049/Plutchiks-wheel-of-emotions-with-basic-emotions-and-derivative-emotions-and-cone-like.png Line 141: Simplistic visual representation of variant dyad types would aid reading comprehension There is no mention of cultural variation of emotion within the paper; however, the introduction of dyads does in part mitigate this oversight from a technical standpoint, by providing for a more complex description of emotion. Nonetheless, some acknowledgement/discussion of cultural differences in emotion should be included for context. Please review citations carefully. A few examples: Citation 22: “a ective” → affective Citation 5: “Nrclex” → “NRClex” (please include URL) Citation 24: “Imdb” → “IMDB” and “kaggle” → “Kaggle” 29: “fmcg” capitalize “facebook”, “twitter”, “Italian” - brands & languages/countries should always be title cased 66: “Manyeyes” → “ManyEyes” etc. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PyPlutchik: visualising and comparing emotion-annotated corpora PONE-D-21-18896R1 Dear Dr. Vilella, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Christopher M. Danforth Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-21-18896R1 PyPlutchik: visualising and comparing emotion-annotated corpora Dear Dr. Vilella: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Christopher M. Danforth Academic Editor PLOS ONE |
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