Peer Review History

Original SubmissionMarch 9, 2021
Decision Letter - Monica Cartelle Gestal, Editor
Transfer Alert

This paper was transferred from another journal. As a result, its full editorial history (including decision letters, peer reviews and author responses) may not be present.

PONE-D-21-07720

Prevalence and risk factors for antimicrobial resistance among newborns with gram-negative sepsis

PLOS ONE

Dear Dr. Chan,

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Kind regards,

Monica Cartelle Gestal, PhD

Academic Editor

PLOS ONE

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Additional Editor Comments (if provided):

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

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2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

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3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

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4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

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5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: A well designed study.

How frequently does the study hospital change its antibiotic policy?

The effective sample size was 119. Total number of newborn enrolled i.e. 4828 was not used for analysis. Therefore, it may not be included in abstract.

Reviewer #2: Please see the attached document with my comments, suggestions, and questions. Please consider these and answer the questions as best you can.

A note about the figures and tables:

The authors are encouraged to make a list all figures at the end of the document. Moreover, include figure captions, or legends, that are complete so that the reader is able to understand the figure without reference to the text. Describe only what is seen on the image. Use of arrows, asterisks, arrowheads, etc. are useful to communicate or covey to the readers your findings. The authors are advised to revise the captions all figures.

The authors are encouraged to make a list all tables at the end of the document. The headings or titles of the tables should be complete so that the reader is able to understand the table without reference to the text. The authors are advised to revise the titles of all tables. For example: “Table 1.Prevalence and risk factors for antimicrobial resistance among newborns with Gram-negative sepsis: Descriptive analysis for baseline characteristics of 119 newborns Included in Antimicrobial Resistance Study”

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6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: Yes: Manas Pratim Roy

Reviewer #2: Yes: Uriel Blas-Machado

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

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Attachments
Attachment
Submitted filename: BARNARDS AMR Manuscript 28Feb_with Reviewer comments and edits.docx
Revision 1

Thank you for taking the time to comment on this manuscript. Your comments are highly constructive and appreciated.

Reviewer #1

1. How frequently does the study hospital change its antibiotic policy?

Response: Thank you, changes to antibiotic policy in the study hospital are made based on recommendations and policy changes from Ministry of Health and does not occur regularly, the last change to antibiotic policy occurred in 2014.

2. The effective sample size was 119. Total number of newborn enrolled i.e. 4828 was not used for analysis. Therefore, it may not be included in abstract.

Response: Thank you, this was removed in the abstract.

Reviewer #2

1. Please see the attached document with my comments, suggestions, and questions. Please consider these and answer the questions as best you can

Response: Thank you for comments and suggestions. We have addressed them as best we can. Following recommendations from CDC website and Cochrane, "Gram should be capitalized and never hyphenated when used as Gram stain; gram negative and gram positive should be lowercase and only hyphenated when used as a unit modifier", we did not capitalize the “g” in gram-negative but accepted all other suggested edits.

2. A note about the figures and tables:

The authors are encouraged to make a list all figures at the end of the document. Moreover, include figure captions, or legends, that are complete so that the reader is able to understand the figure without reference to the text. Describe only what is seen on the image. Use of arrows, asterisks, arrowheads, etc. are useful to communicate or covey to the readers your findings. The authors are advised to revise the captions all figures.

Response: The figure legends and captions have now been revised as advised. The figures are cited in the text in order per the PLOSone formatting instructions and uploaded as sperate individual figure files. https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf, we have added a list of all figures to the end of the document as suggested. We understand colors are typically part of the legend, however we kept the legends defining the colors used in the figure in the figures in case this is easier to format in the publication. Please let us know if you’d prefer that we move these into the manuscript.

The authors are encouraged to make a list all tables at the end of the document. The headings or titles of the tables should be complete so that the reader is able to understand the table without reference to the text. The authors are advised to revise the titles of all tables. For example: “Table 1.Prevalence and risk factors for antimicrobial resistance among newborns with Gram-negative sepsis: Descriptive analysis for baseline characteristics of 119 newborns Included in Antimicrobial Resistance Study”

Response: The table titles and legends have now been revised as advised. We have added a list of tables to the end of the document as per the reviewer’s comment.

3. Why 6 drops and not 5 or 7? What is the reasoning? Please explain.

During protocol development 6 drops was agreed as a guide to allow sufficient volume of blood to adhere to the agar and encourage microbial growth. It might be best to use ‘aliquot’ rather than being too detailed, hence the wording has been changed accordingly.

Thank you your time and helpful comments to strengthen the manuscript.

Attachments
Attachment
Submitted filename: Response to reviewers 31May2021.docx
Decision Letter - Monica Cartelle Gestal, Editor

Prevalence and risk factors for antimicrobial resistance among newborns with gram-negative sepsis

PONE-D-21-07720R1

Dear Dr. Chan,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

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If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Monica Cartelle Gestal, PhD

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: All comments have been addressed

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2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: (No Response)

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3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: (No Response)

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4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: (No Response)

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5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Changes are satisfactory. However, if the hospital has not changed its policy on antibiotic use after 2014, what would be the practical implication of such a study?

Reviewer #2: (No Response)

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7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: Yes: Manas Pratim Roy

Reviewer #2: Yes: Uriel Blas-Machado

Formally Accepted
Acceptance Letter - Monica Cartelle Gestal, Editor

PONE-D-21-07720R1

Prevalence and risk factors for antimicrobial resistance among newborns with gram-negative sepsis

Dear Dr. Chan:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Monica Cartelle Gestal

Academic Editor

PLOS ONE

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