Peer Review History
| Original SubmissionFebruary 16, 2021 |
|---|
|
PONE-D-21-05227 Prevalence and associated factors of HIV and Hepatitis C in Brazilian high-security prisons: A state-wide epidemiological study PLOS ONE Dear Dr. Wendt, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Your manuscript was reviewed by 2 experts in the field. Both identified many important problems in your submission and provided copious comments. Please consider the attached comments and provide point-by-point responses. Please submit your revised manuscript by Jun 10 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Yury E Khudyakov, PhD Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements.
https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please provide additional details regarding participant consent. In the ethics statement in the Methods and online submission information, please ensure that you have specified whether consent was informed. 3. Please provide additional information regarding the considerations made for the prisoners included in this study. For instance, please discuss whether participants were able to opt out of the study and whether individuals who did not participate receive the same treatment offered to participants. 4. In your Methods section, please provide additional information about the participant recruitment method and the demographic details of your participants. Please ensure you have provided sufficient details to replicate the analyses such as: a) the recruitment date range (month and year), b) the names of the 11 maximum security prisons, c) a table of relevant demographic details, d) a statement as to whether your sample can be considered representative of a larger population, and e) a description of how participants were recruited. 5. We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. In your revised cover letter, please address the following prompts: 5a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially identifying or sensitive patient information) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. 5b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings as either Supporting Information files or to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. Please see http://www.bmj.com/content/340/bmj.c181.long for guidelines on how to de-identify and prepare clinical data for publication. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. We will update your Data Availability statement on your behalf to reflect the information you provide. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Reviewer comments Manuscript ID: PONE-D-21-05227 Title" Prevalence and associated factors of HIV and Hepatitis C in Brazilian high-security 3 prisons: A state-wide epidemiological study". Generally speaking: Thank you for providing me the opportunity to review this manuscript that raises important critical issues about assessing the Prevalence and associated factors of HIV and Hepatitis C in Brazilian high-security 3 prisons. Such assessment will provide concrete data that will help in the micro-elimination of HCV. Definitely, the awareness about what is going on in prisoners is essential and would be great if the authors could provide in addition the situation of the action taken by the government e.g treatment options, strategy development and what is planned for this particular at risk groups Following are my specific comments: Comment:1 1. Title: is specific and reflective of the research work content. Comment:2 2. Abstract: a) Background –correct with a sentence focused on a key idea explaining why this topic was chosen. b) Objectives – add the risk factors under the investigation c) Methodology - correct d) Results - need some quantification on the risk factors …. e) Conclusions- are too general; the conclusion should mention specific challenges to be met as well as specific recommendations that is related to the findings of the manuscript. Comment:3 3. Introduction: Well written explaining why this topic was chosen for analysis in this article. Comment:4 Methods: Generally, the information mentioned under the methodology deficient and should be divided into several sub-sections as follow: a. Type of the study b. Study setting c. Study Participants: d. Sample type and size: The basis of sample size calculation should be mentioned to know the confidence level and the margin of error. e. Measurements- OR is calculated for both the comparative cross section study and case control study as well. Please refer to the comment 5-2 in the study section. Comment:5 Results: has to be badly improved for all the tables 5. 1 Results – should be separated from the discussion section 5.2 The mentioned sample size was 1,154 with overall prevalence of HCV and HIV detected among 1,132 meaning that only 22 cases were –ve. Accordingly, the authors has to mention how they calculated the Odds Ratio with this very small number of the comparative group. This imply that All the tables should include two columns for number and % of HCV +ve and HCV _ve and 2 columns for HIV +ve and –ve for the results to be more understandable. 5.2 line 140 and 141 indicated that the prevalence of HCV (2.7%) and HIV (1.6%) while the tables mentioned an overall prevalence 1,132: please clarify Comment:6 6. Discussion: should be separate section, focusing discussion on critical or essential findings and explicitly linking the conclusions with the reported data should be more emphasized. Comment:7 7. Conclusion – is general one, it should be specific and explicitly linking the conclusions with the reported data, write suggestions for improvement as well as add limitations of the proposed technique to the conclusion section and provide recommendations for future research that is focused on the findings 8. References: adequate Reviewer #2: Having reliable data on the HIV and HCV infection spread within closed prison communities is certainly very important, especially in this era of highly active antivirals against the two viruses. To achieve the goal of reducing reservoirs of infection in humans and the infections spread, until eradication for HCV, it is necessary to identify all difficult-to-reach and unaware patients in the few places where this is possible. Prisons are certainly one of these. For this reason I think this paper have a great interest. Unfortunately, the manuscript present many critical and incomprehensible points, starting with how the sample was collected. The authors speak of a randomization of 8,142 inmates of 11 correctional institutions, but do not explain in any way how they arrived at 1,132 HCV screening tests and, above all, how many inmates were tested for each prison (only a generic "prevalence by municipality" is indicated). Furthermore, those who tested positive seems to referred as infected without an HCV-RNA determination and without having been defined the proportion of viraemic HCVs to be treated with DAA. For these reasons, we think the paper can be improved and become sufficient for publication on PLOS ONE with the following corrective actions: - To improve the comprehensibility and clarity of the study, our advice is to separate the chapter of materials and methods into paragraphs as follows: study conduction, sample size and statistical analysis, ethical issues. Please provide sample size determination including it in the described paragraph or mention it as limitation of the study. - Similarly, it is advisable to separate the results and discussion section into two paragraphs. The results should be described more systematically and subsequently with no judgements on the results. In a separate chapter the discussion should compare the results with international literature in total and stratified in the different cohorts, with special regard on IDU patients cohort. Here a list of examples in literature that may help: DOI 10.1007/s10654-014-9958-4 - HCV serologic positivity found in enrolled patients if not followed by determination of a positive HCV-RNA cannot be considered as active infection. It is never mentioned if viral load in patients with positive antibodies for HCV was performed. Throughout the text of the article the term HCV infection is therefore used improperly and it should be replaced. We believe for ethical concerns HCV-RNA determination should be at least scheduled in positive HCV antibodies patients to help diagnosis and start treatment. Nevertheless this data could be included in the study and compared. Here a list of other examples in literature: https://doi.org/10.1111/liv.14745 https://doi.org/10.1016/j.drugpo.2018.06.017 https://doi.org/10.1016/j.drugpo.2020.103055 - There is no mention of the study limitations. - The conclusions of the study that call for urgent change in perspective are not supported by the evidence of the study itself that shows relatively low HCV seroprevalence. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Babudieri Sergio [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
|
| Revision 1 |
|
Seroprevalence and associated factors of HIV and Hepatitis C in Brazilian high-security prisons: A state-wide epidemiological study PONE-D-21-05227R1 Dear Dr. Wendt, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Yury E Khudyakov, PhD Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #2: All comments have been addressed clearly in the corrected version. The text is now well structured with a clear separation of the paragraphs. The sample size is described and the statistics are reported. We hope this study continues with the determination of active infections in order to be able to estimate the active ones and that the infected patients may reach treatment. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Prof. Ammal Mokhtar Metwally Reviewer #2: No |
| Formally Accepted |
|
PONE-D-21-05227R1 Seroprevalence and associated factors of HIV and Hepatitis C in Brazilian high-security prisons: A state-wide epidemiological study Dear Dr. Welter Wendt: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Yury E Khudyakov Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .