Peer Review History
| Original SubmissionJanuary 18, 2021 |
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PONE-D-21-01842 A phenolic-rich extract from Ugni molinae berries reduces abnormal protein aggregation in a cellular model of Huntington’s disease PLOS ONE Dear Dr. Delporte, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Several methodological concerns are stated in the Reviewers' reports and have to be meticulously addressed during revising. Please provide point-by-point response to Reviewers and if a particular point needs discussion, please offer one. The Discussion section should be considerably deepened in the directions provided by the Reviewer #2. Please submit your revised manuscript by Apr 09 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Branislav T. Šiler, Ph.D. Academic Editor PLOS ONE Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. PLOS ONE now requires that authors provide the original uncropped and unadjusted images underlying all blot or gel results reported in a submission’s figures or Supporting Information files. This policy and the journal’s other requirements for blot/gel reporting and figure preparation are described in detail at https://journals.plos.org/plosone/s/figures#loc-blot-and-gel-reporting-requirements and https://journals.plos.org/plosone/s/figures#loc-preparing-figures-from-image-files. When you submit your revised manuscript, please ensure that your figures adhere fully to these guidelines and provide the original underlying images for all blot or gel data reported in your submission. See the following link for instructions on providing the original image data: https://journals.plos.org/plosone/s/figures#loc-original-images-for-blots-and-gels. In your cover letter, please note whether your blot/gel image data are in Supporting Information or posted at a public data repository, provide the repository URL if relevant, and provide specific details as to which raw blot/gel images, if any, are not available. Email us at plosone@plos.org if you have any questions. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: N/A ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The present study has studied the effect of phenolic rich extract of Ugni molinae berries against protein aggregation in neurodegenerative disorders especially HD. The study has been very well designed and all the methods used in this study have been explained in sufficient details. The results and discussion of the present manuscript is also very well articulated and explicitly explained. Following are some of my observations which require some clarity: 1. Authors have used ‘simple maceration’ for extracting the plant material. What was the duration of extraction and also mention the solvent to material ratio as these are important parameters that will affect the extraction efficiency. Since the effect of extracts is correlated with the phenolic content, these parameters are important for reproducibility of the results. 2. Why 1% formic acid in ethanol was used for extraction? 3. Authors have stated that polyQ79-EGFP inclusions are not correlated with the TPC of different ETEs but with polyphenolic content. How you differentiate between total phenolic and polyphenolic content? Further, ETE19-2 exhibited highest phenolic content, what was its effect on polyQ79-EGFP inclusions? 4. The results of the extracts have been mainly correlated with the phenolic compound especially, flavonoid glycosides. But the effects of different extracts are not in concordance with the TPC. Authors have mentioned that, the effects of ETE 19-1 are attributed to a specific combination of phenolic compounds present in the extract. Was the ETE free from other type of phytoconstituents? Since constituents belonging to other phytochemical class are also soluble in ethanol, there may be possibility that phytoconstituents belonging to other classes might play a role in the activity. If yes then this should also be mentioned and not only the phenolic compounds. 5. The only limitation of the study is the correlation of the activity of the berries seed extract with polyphenolic compounds only on basis in-vitro studies only. This should be mentioned in the end of the study and further in vivo studies are warranted to corroborate the results of this study. Reviewer #2: In this work, the authors evaluate the effects on the load of Huntington’s disease-related protein aggregates of semi-purified extracts obtained from fruits of 8 different genotypes of Chilean-native Ugni molinae berries and comparatively determine the possible differences in their phenolic composition. They identified significant differences in the biomedical properties and polyphenolic composition of ACEs and ETEs obtained from U. molinae fruits of different genotypes. Among those extracts, ETE 19-1 treatment had a potent activity over the abnormal protein aggregation on two different cellular models of HD, which might be mediated, in part, by autophagy induction. The authors in this work should verify the effect of the treatment with polyphenol extracts on some biological parameters that could be modified. The effects on cell proliferation and cell cycle should be evaluated (PMID: 31412320). Furthermore, considering the antioxidant properties of the extracted polyphenols, it is useful to check whether the levels of endogenous reactive oxygen species (ROS) undergo variations (PMID: 19212014). The most abundant polyphenol found in the extracts analysed by the authors is the flavonoid Quercetin. Quercetin has been reported to act as a senolytic by selectively removing senescent cells (PMID: 29315311). Senescence is a process that occurs following genotoxic stimuli and induces permanent cell cycle arrest with a loss of cellular functions (PMID: 27288264). Recently, Quercetin has been shown to display senolytic effects in some primary senescent cells, likely as a consequence of its inhibitory effects on specific anti-apoptotic genes, displaying senescence delaying activity in primary cells and rejuvenating effects in senescent cells (PMID: 26343116: PMID: 33242601; PMID: 32686219). Based on these knowledges, it is of fundamental importance to evaluate the effect of polyphenol extracts on cellular senescence in in vitro studies by beta-galactosidase assay and by western blot analysis of the levels of expression of various proteins involved in senescence and in cell cycle exit such as RB - RB2 - p107 - p53 - p27 -p21 - ARF - p16. (PMID: 26498687). These experiments are crucial to understand if with this treatment there is a reduction in cellular senescence that can have a role in contrasting the accumulation of misfolded proteins in the brain. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-21-01842R1 A phenolic-rich extract from Ugni molinae berries reduces abnormal protein aggregation in a cellular model of Huntington’s disease PLOS ONE Dear Dr. Delporte, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== The authors have properly addressed the reviewers concerns. However, since PLOS ONE does not copyedit manuscripts, authors' action is needed in order to improve typographic and grammar errors. Please, double-check the whole text in this regard. Some hints: L130 and elsewhere: Please use 1×, not 1X. L131 and further: CO2, O2, CaCl2 - "2" should stand in subscript. L199, L216: Please do not start a sentence with a number. Rephrasing is needed. Use "×" instead of "x". L249 and elswhere: Please avoid italicizing expressions which do not need it. For instance, "ReSpect" is stated in both Roman and cursive. Figure 6: "Pentoside" and "Hexoside" should not be capitalized. Main title: "from" should not stand italicized. L36: Please introduce the common name "murtilla" since used further in the manuscript. L38 and further: Once introduced in full, species' Latin name should be abbreviated as U. molinae. ============================== Please submit your revised manuscript by Jul 31 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Branislav T. Šiler, Ph.D. Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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A phenolic-rich extract from Ugni molinae berries reduces abnormal protein aggregation in a cellular model of Huntington’s disease PONE-D-21-01842R2 Dear Dr. Delporte, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Branislav T. Šiler, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-21-01842R2 A phenolic-rich extract from Ugni molinae berries reduces abnormal protein aggregation in a cellular model of Huntington’s disease Dear Dr. Delporte: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Branislav T. Šiler Academic Editor PLOS ONE |
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