Peer Review History
| Original SubmissionDecember 24, 2020 |
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PONE-D-20-39850 Prognosis of amyotrophic lateral sclerosis with cognitive and behavioural changes based on a five-year longitudinal follow-up PLOS ONE Dear Dr. Fan, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Mar 26 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Weidong Le Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please describe in your methods section how capacity to provide consent was determined for the participants in this study. Please also state whether your ethics committee or IRB approved this consent procedure. If you did not assess capacity to consent please briefly outline why this was not necessary in this case. 3. Thank you for stating the following in the Funding Section of your manuscript: "This work was partially supported by grants from National Natural Science Foundation of China (Project No. 82001350), Peking University Third Hospital Key Clinical Projects (Project No. BYSY2018048), Peking University Third Hospital Cohort Construction Project (Project No. BYSYDL2019002)" We note that you have provided funding information that is not currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript." Please include your amended statements within your cover letter; we will change the online submission form on your behalf. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: No Reviewer #2: Partly Reviewer #3: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No Reviewer #2: Yes Reviewer #3: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes Reviewer #3: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: Yes Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This is an original article about the role of cognitive impairment as a prognostic determinant in a small and heterogeneous group of ALS patient. Despite the interesting topic, the article completely lacks data to support its conclusions. First, the definition of cognitive impairment did not follow correctly the mentioned Strong criteria for ALS-FTD; also, the author used only ECAS to define cognitive categories. Second, the statistical analysis for survival is not a survival analysis (Kaplan-Meier or Cox proportional HM) but a correlation analysis, performed only on deceased patients – a significant source of bias. Third, there is no statistical comparison of the three, small and heterogeneous groups and no adjustment for other prognostic determinant, such as age, sex, bulbar vs spinal onset. The article should not be published in the current form. Abstract: 1. The ALS-FTD is ALS plus frontotemporal dementia and not only behavioral variant, which is the most common. Please rephrase. 2. Less than half of the patients were followed-up (42 from 87). 3. Survival time is in years? Materials and methods 4. As in the abstract, check the definition for ALS-FTD (ALS with fronto-temporal dementia) using Strong Criteria. 5. In this section, the authors did not mention any details about the neuropsychological battery used to derive cognitive classification, did they use only the ECAS? Moreover to clarify this process, I think it is better to classify patients in ALL the Strong categories contained in the Axix II of the original article (ALS-CN, ALS-ci, ALS-bi, ALS-cbi, and ALS-FTD) and then, due to the relative small number of patients included, to merge intermediate cognitive impairment into a unique category. If only ECAS was used to define cognitive status, it is very difficult to believe in this classification. 6. ECAS score published previously: citation? I think it is better to reassume patients features also in this article, not only adding the clinical information of the 3 ALS-FTD patients added. For this, Table 1 add no useful information without comparison to the other patients included. 7. If the authors said that all patients were followed up, why the only a half of patients complete the follow up? Do you mean they died? Please clarify this point. 8. Substitute “clinical death” with “death”. 9. Statistics Pearson and Spearman correlation are not survival analysis. This is the major problem of the article, use this statistical methods, combined with a small number of patients, analyzing only data from patients who reach the outcome is a huge source of bias. Results 10. Table 2. There is no comparison among groups… for example, the disease duration is very different among groups, especially in the CN-group the survival is significantly higher than in other groups. 11. The reduced survival could be related to other clinical features, more than cognitive impairment, such as age (62 vs 55), male sex, the higher percentage of bulbar-onset patients.. without Cox analysis the authors are not able to consider all this features in adjustments. Conclusions 12. The conclusions continue to refer only to behavioral impairment, misinterpreting the Strong definitions for ALS-FTD. Considering the multiple possible bias performed in the Results section, they should be completely rewritten. Reviewer #2: The authors of this paper have followed up for 5 years a cohort of 87 ALS patients classified according to cognitive impairment. ALS-FTD patients had a worse survival and more rapid progression of ALSFRS-R compared to ALS with cognitive and behaviour changes and cognitively normal ALS. The total Edinburgh Cognitive and Behavioural Amyotrophic Lateral Sclerosis Screen (ECAS) score was positively correlated with survival time. The authors conclude that patients with ALS-FTD have a shorter survival time than patients with simple ALS or ALS combined with cognitive and behavioural dysfunction. Some comments 1. The classification of patients in ALS-FTD, ALS with cognitive and behaviour changes and ‘simple ALS’ is not clear. The authors refer to Strong’s classification, but this classification propose 3 intermediate groups (ALS with cognitive impairment, ALSci; ALS with behavioural impairment, ALSbi; and ALS with cognitive and behavioural impairment, ALScbi). It seems that the authors have reunited the 3 intermediate forms. If it is correct, they should explain this point in the methods section. 2. A second relevant point: was the cognitive classification based only on ECAS or the authors used a more comprehensive battery of cognitive tests? This aspect should be better explained. However, if only ECAS was used, this should be reported as a limitation of the study, since ECAS alone cannot allow to categorize the patients according to Strong’s classification. 3. An interesting finding of the paper is the correlation between ECAS and survival. It would be interesting for the readers to know if only the total ECAS score was corrected with survival or if any of the subscores were also correlated. 4. Among paper suggesting that cognitive impairment worsens over time the authors missed the following one, which should be included in the discussion since is demonstrates that patients who have a worsening of their cognitive function has a also a worse outcome. Bersano E, Sarnelli MF, Solara V, Iazzolino B, Peotta L, De Marchi F, Facchin AP, Moglia C, Canosa A, Calvo A, Chiò A, Mazzini L. Decline of cognitive and behavioral functions in amyotrophic lateral sclerosis: a longitudinal study. Amyotroph Lateral Scler Frontotemporal Degener. 2020 Aug;21(5-6):373-379. doi: 10.1080/21678421.2020.1771732. 5. The reasons for patients’ drop-out/loss to follow-up should be reported. Minor point Citation 3 is wrong. Iazzolino is mispelled as Lazzolino Reviewer #3: The authors provided a prognostic study in patients with ALS to explore the cognitive and behavior changes in a longitudinal study. The study was of importance to explore the interaction between ALS progression and cognitive and behavior changes. However, there were several critiques need to be further addressed. 1. In the method section, the diagnostic level of ALS patients who met the revised El Escorial diagnostic criteria enrolled in this study need to be clarified. 2. In the method section, patients with severe physical dysfunction were excluded in this study. However, ALS is a progressive disease and more than half of patients were loss to follow-up. Therefore, the baseline characteristics of those failed to follow-up need to be clarified and it is essential to compare those patients with follow-up and no follow-up and to tell if the assumptions were made about verification (ignorable or missing at random–MAR) or non-ignorable or missing not at random–MNAR) 3. In the method section, the authors stated” The clinical information and neuropsychological Edinburgh Cognitive and Behavioural Amyotrophic Lateral Sclerosis Screen (ECAS) scores of 84 of these ALS patients have been published previously.” However, there was no reference cited. In addition, what is the relationship between those to the other three in Table 1? 4. In Table1, diagnostic levels statement was better to be detailed, ALS level or ALS-FTD level ? 5. In the method section, the ECAS was a brief multidomain assessment originally designed for people with Amyotrophic Lateral Sclerosis (ALS/Motor Neurone Disease) but is also useful in other neurodegenerative disorders. However, it was not the golden standard of FTD diagnosis. The criteria of ALS-FTD may need to be further clarified. 6. In statistical section, ALS-FRS was the outcome, and ECAS was the variates. Both were dynamic changed during the follow-up. However, FRS-R progression rate was not supposed as a consistent slope. Therefore, the Cox proportional regression model should be used. Also, modification effect and interaction between onset of disease need be further demonstrated. All statistical strategy need to be re-analyzed and confirmed. 7. In result section, the authors stated that there were differences of total ECAS score between groups. However, it looks similar to the definition of grouping. The meaning of different level of ECAS score means their varied level of cognitive performance, which was confusing. The goal of study need to be further addressed. 8. In the result section, prototypical STARD diagram to report flow of participants through the study was need in the results 9. TRIPOD checklist for prediction model development is highly recommended to be used in this study and uploaded as supplemental materials. This would be an interesting study and identified the relationship between ALS and their cognitive and behavioral changes ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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PONE-D-20-39850R1 Prognosis of amyotrophic lateral sclerosis with cognitive and behavioural changes based on a sixty-month longitudinal follow-up PLOS ONE Dear Dr. Fan, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jun 03 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Weidong Le Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #2: All comments have been addressed Reviewer #3: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #2: Yes Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #2: Yes Reviewer #3: No ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #2: Yes Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #2: Yes Reviewer #3: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #2: All my comments were adequately addressed. I want to compliments the authors for this important and well written paper. Reviewer #3: The authors revised the manuscript and responded all reviewer comments point to point. Still, I had some comment which had not been clarified. The major concerns were still the methodology and statistical analysis. 1. In the method section, patients with severe physical dysfunction were excluded in this study. The high rate of missing data was reasonable. However, it is essential to compare those patients with follow-up and no follow-up and to tell if the assumptions were made about verification (ignorable or missing at random–MAR) or non-ignorable or missing not at random–MNAR). The authors responsed “According to your advice, we looked back our data carefully. We didn’t contain this part of patient in the original manuscript, it might bring bias as you mentioned. ” No details about those patients was listed yet. The authors need to consider a column added to table 1 and table 2. 2. Since the missing data was unavoidable, the authors need to address censoring issue and modified their statistical strategy. 3. In the results section, the authors stated that survival time of the ALS-bvFTD group was significantly shorter than that of the pure ALS group. However, since the distribution was likely not normal, the Wilcoxon test or other approaches could be used. 4. The difference between pure ALS and cognitive impairment ALS was small. However, several baseline characteristics were needed to adjusted and log-rank test was need to be considered here. 5. The linear regression analysis between progression rate and follow-up time was performed. However,it might be nonlinear regression model and cubic or GEE model were worth be explored. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Prognosis of amyotrophic lateral sclerosis with cognitive and behavioural changes based on a sixty-month longitudinal follow-up PONE-D-20-39850R2 Dear Dr. Fan, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Weidong Le Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-20-39850R2 Prognosis of amyotrophic lateral sclerosis with cognitive and behavioural changes based on a sixty-month longitudinal follow-up Dear Dr. Fan: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Weidong Le Academic Editor PLOS ONE |
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