Peer Review History
| Original SubmissionFebruary 15, 2021 |
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PONE-D-21-05110 Outcomes of excessive alcohol drinkers after 15 years follow-up: heavy burden of cancer and liver disease mortality PLOS ONE Dear Dr. Machado, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Special attention should be given to the issue of retrospective evaluation of alcohol drinking history during long-term follow-up: As pointed out by Reviewers 1 and 3, more details on drinking history should be provided or - if those are lacking - this limitation should be stated more clearly in the Discussion. I concur with Reviewer 2 that ROC analysis does not seem appropriate for dichotomous variables (Figure 1). Please submit your revised manuscript by May 07 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Rudolf E. Stauber, MD Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Thank you for including your ethics statement: "This study was approved by the CHULN and CAM ethic committee (ID number 13/18). All patients gave their informed, written consent to participate in the study.". Please amend your current ethics statement to include the full name of the ethics committee/institutional review board(s) that approved your specific study. Once you have amended this/these statement(s) in the Methods section of the manuscript, please add the same text to the “Ethics Statement” field of the submission form (via “Edit Submission”). For additional information about PLOS ONE ethical requirements for human subjects research, please refer to http://journals.plos.org/plosone/s/submission-guidelines#loc-human-subjects-research. 3. Please include additional information regarding the survey or questionnaire used in the study and ensure that you have provided sufficient details that others could replicate the analyses. For instance, if you developed the survey or questionnaire as part of this study and it is not under a copyright more restrictive than CC-BY, please include a copy, in both the original language and English, as Supporting Information. If the questionnaire is published, please provide a citation to the (1) questionnaire and/or (2) original publication associated with the questionnaire. 4. Please provide the name of the alcohol rehabilitation clinic. 5. Your ethics statement should only appear in the Methods section of your manuscript. If your ethics statement is written in any section besides the Methods, please delete it from any other section. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes Reviewer #3: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: No Reviewer #3: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes Reviewer #3: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: I consider this an important study since alcohol-related health issues are significant and we lack enough data on long-term follow up in heavy drinkers. In my opinion, since it is quite challenging to enroll drinkers in such studies, I am fine with the partly retrospective aspect of the study and partly missing data. It is also natural that transient elastography was not available. However, the real and important data should be shown, and the retrospective study design should be visible already in the abstract. An important limitation of this retrospective study design is the diagnosis of “chronic liver disease” (CLD), since it cannot actually be ruled out based on the used conventional diagnostic approaches. Both lab tests and routine ultrasound can overlook manifest liver cirrhosis in up to 50%. Pending a critical revision, the paper could be considered again for publication since it provides important clinical read outs in a long-term followed up cohort of heavy drinkers. Major comments/questions: 1. It is correct that we do not know enough about heavy drinkers outcome with no liver disease. But the absence of CLD cannot be done efficiently based on the diagnostic criteria as mentioned above. In addition, APRI score, although quite usefuly in the setting of viral hepatitis, performs very poorly in ALD. IN contrast, FIB4 can be accepted, and I recommend to solely stratify the cohort based on FIB4 since no other data such as ELF are available. Fib4 could also be combined with the available albumin since the recently introduced Albi Fib4 score seems to perform even better. 2. The strength of the study is the rather careful medical history and the descriptions of the various causes of death. I miss a clear description of these findings either in supplemental table or even in the major text body. 3. The risk to develop ALD is described to be as high as 15% per year. This seems to by far to highy. E.g. in other cohorts of heavy drinkers, 20% developed cirrhosis after 15 years of heavy drinking. 4. Baseline data: Again it is not very clear but important for this study how patients were enrolled: It reads that “Patients with harmful alcohol consumption and evidence of alcohol-dependence, followed in an Alcohol Rehabilitation Clinic, were prospectively and consecutively enrolled in a clinical protocol performed in 2002 ref 13 and retrospectively re-evaluated in 2018. What means retrospectively in this context? How was liver disease excluded? I am also confused when looking at Ref 13: Herewith some data: 5. Ref 13 (Martins A et al Eur J Gastroenterol Hepatol 2005; 17 (10):1099-1104.). In this study, completely different patient numbers are provided 6. It is also interesting that obviously an an isolated rise in GGT was not considered an exclusion criterium. Why? How many patients were enrolled based on these criterium. 7. It is further pointed out that follow up data were retrospectively obtained form a national database. IT would be interesting to learn how data on alcohol consumption are regularly entered in this data base. Who is doing this? How often did patients undergo alcohol detoxification? 8. Since alcohol drinking history is essential for this study, more details should be provided, given the fact that it is generally challenging for patients to provide a detailed alcohol history with stops and goes. How was duration of alcohol consumption assessed. How do patients remember an alcohol drinking history of the last 10 years or so? In line with this, a 53% of relapse appears to be rather low for heavy drinkers 9. On page 12 it is stated that 9% had previous AH while in the inclusion criteria, previous decompensation was ruled out? 10. What about the numbers of diabetes and obesity? 11. Smoking is shown as risk factor for DM II with an OR 0.181 Does smoking protect from diabetes? There are studies continueosly showing a tight association between smoking and alcohol consumption? What are the numbers for this cohort? Reviewer #2: This is an interesting prospective study that studies the natural history of heavy drinkers without evidence of liver disease and evaluates their clinical outcomes, risk of death and of developing liver disease during 15 years of follow up. Risk factors were also identified. From this standpoint, the study is important because little is know about the risk of developing CLD in heavy drinkers. However, there are some issues that need further clarification: - the data in table 1 are presented as mean±SD, which - based on the figures, seem not quite appropriate (at least for some of the variables. Could you please look back to the distribution of the variables and use median±IQR/range when needed. Also, in some cases, non parametric tests should have been used. - regarding the data presented in figure 1, I think that the AUROC analysis is not the right choice for what was intended by the authors. AUROC is usually used with continuous variables, not with dichotomial ones. I believe a regression analysis (or a basic chi-square test) would be better choices. - the manuscript also need a further English polish ti increase its readability. Reviewer #3: Mariana Machado and colleagues present a single-center study from Lisbon on the natural history of 130 patients with a history of excessive drinking who present at an alcohol rehabilitation unit, but without evidence of chronic liver disease or cancer. The authors are commended for managing to recall almost all (7 losses to follow up) participants after 14±3 years for repeated investigations and a detailed description of alcohol use during follow up. While there is a need for longitudinal studies on the natural history of patients with harmful drinking, taking fluctuations in alcohol use over the years into account, the study in its current form has substantial methodological and reporting issues which limits interpretation of results. Please find below my questions, comments and suggestions for improvement. MAJOR: • Please use the STROBE guidelines for reporting: https://www.equator-network.org/reporting-guidelines/strobe/ • Title: the short titles accurately states that development of CLD during follow up is the outcome of interest, while the long title does not. • Lay summary, first point. It is not surprising that ongoing rather than past alcohol intake dictates the risk of liver cirrhosis development when you specifically exclude anyone with evidence of liver disease at baseline. Therefore I suggest to delete this sentence. • The authors stress the point that alcohol consumers on average has a 10 yr reduced life expectancy. Their way of comparing cohort data with a country average is not really methodologically correct – the correct comparator would be 5:1 or 10:1 gender, age, time and geography matched random sample from the population. Therefore, I would propose not to emphasize the 10 yr reduction in life expectancy as much as the authors do – e.g. it appears in both abstract and bullet points. • Introduction: The statement “Liver disease is the main alcohol-related chronic illness” gives the wrong impression, since liver disease – as the authors show – does not account for the majority of alcohol-related harm. I would propose instead to stress that the the liver is the single organ most commonly affected by excess drinking. • Methods: Reference 13 is referred to as the original study. However, it describes a cohort of only 76 patients without evidence of liver disease at baseline, but this manuscript includes n=130 ? • Methods: Please describe in more detail the in- and exclusion criteria. Which liver blood tests were considered? If fibrosis stage F1 on liver biopsy, the patient were considered to have ALD and excluded? From the text is seem like a very heterogeneous cohort, since many with compensated cirrhosis at baseline may have normal liver blood tests (see e.g. Table 1 in Mueller, World J Gastroenterol 2014 October 28; 20(40): 14626-14641). Those patients would be included unless they had a liver biopsy? In contrast, many with no or minimal fibrosis may have elevated transaminases and alkaline phosphatase – they would be excluded? • Methods: Similarly, the definition of the primary outcome, development of CLD, is poorly described. The current description can encompass patients with anything from steatohepatitis without fibrosis, all the way to decompensated cirrhosis. • Methods: The authors state that inclusions were in 2002 and reassessment in 2018, which would result in 16 years between baseline and reevaluation. Yet, in methods they state a follow up of 14 ±3 yrs? • Clearly, the alcohol habits of those who die in between baseline and follow up can not be evaluated, or did the authors have information from other sources on alcohol behaviour during follow up? • Methods: When the primary endpoint is risk of CLD, the authors should account for how they handle non-CLD death as a competing risk? • Methods: Baseline CLD and cancer are excluded, but cardiovascular or metabolic disease are not, so the comparison between deaths from CLD, cancer and CVD is unbalanced. • Results: seven patients (6%) progressed to CLD, which is lower than in studies of similar populations (for example Holst, Addiction 2017, vol 112, where approximately 25% die from liver related death). Could the authors discuss this? Would more accurate liver tests – like FibroScan, which was widely available in 2018 – have resulted in higher proportion being detected with CLD? • Results: It makes less sense to discuss biomarkers of liver disease, when abnormal liver blood tests were an exclusion criterium. • Discussion: It is problematic that there is such a long time period between baseline and follow up with regards to obtaining alcohol history. I fear that recall bias may play a strong role, since those who have developed CLD will be more prone to remember alcohol drinking periods than those who have not. Can the authors discuss this limitation? • I recommend a language revision by a native english speaker. Examples from the abstract: “Most long-term heavy drinkers do not present chronic liver disease” (present with CLD?); “being abstinent for at least 1 year positively modeled CLD-free survival” (correlated or associated with CLD-free survival?); “showed an impressive decreased life expectancy” (impressive has positive connotations, which is in stark contrast to decreased life expenctancy). ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-21-05110R1 Outcomes of excessive alcohol drinkers without baseline evidence of chronic liver disease after 15 years follow-up: heavy burden of cancer and liver disease mortality PLOS ONE Dear Dr. Machado, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== Please follow the recommendations of Reviewer #3 in order to further improve the presentation of your interesting findings. The abbreviation 'LC' should be replaced by 'cirrhosis' (not 'liver cirrhosis' as there is no other cirrhosis). ============================== Please submit your revised manuscript by Jun 14 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Rudolf E. Stauber, MD Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: No ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: No ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: I am satisfied with the author's response and modifications of the manuscript. Acceptance recommended. Reviewer #2: (No Response) Reviewer #3: Thank you for the revised version of this manuscript. I have just a few additional suggestions and comments: General: • Please throughout the manuscript state both absolute numbers and proportions. The cohort is relatively small, so the sole reporting of percentages gives a wrong impression. • Language: English editing is still needed. There remain grammar errors and sentence structures which gives a poor impression, and at certain places makes the text difficult to even understand. • LC is not a common abbreviation; I suggest to write liver cirrhosis in full throughout. Results: - There is a lack of time to progression for all outcomes, except for the Kaplan Meier plots. This hinders accurate interpretation, and should be stated in the text. - Figure 1: The ROC analysis is not the correct method to assess prognostic accuracy as it is not time-dependent. Should be replaced with Harrell’s C or time-dependent ROC curves. Discussion: - Based on the low event rate and relatively high survival for this type of patient I still suspect a high degree of survivors bias. The authors correctly state: “The first striking finding, from this cohort, is that patients who have no evidence of CLD despite being heavy-drinkers for 25 years are still at increased risk for CLD”. I suggest to more clearly acknowledge and discuss the limitation of survivors bias and that this is not an inception cohort. Rather, included participants have already survived >20 years of heavy drinking without developing evidence of chronic liver disease and this population is therefore selected to be less likely to develop liver disease during the next 14 years, than the average patients with heavy drinking. - Regarding excess cancer risk due to combined alcohol and smoking. The sentence “This population should probably be submitted to a personalized screening program.” is unsubstantiated as this cohort is not suited to investigate such topic. - Similarly the discussion about beer drinking having a possible protective effect is purely speculative and this study is not powered or designed to make such assumptions. The effect of beer may also be that it is the type of beverage containing the lowest percentage of alcohol; or just a common type I error. - The discussion of lack of liver biopsy may be replaced with lack of accurate confirmatory tests – LB or LSM – to ensure the absence of liver disease. - I am not sure I understand the sentence “These patients represent the largest subgroup of heavy-drinkers on clinical practice”. I guess it depends on which healthcare setting one operates in? ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Outcomes of excessive alcohol drinkers without baseline evidence of chronic liver disease after 15 years follow-up: heavy burden of cancer and liver disease mortality PONE-D-21-05110R2 Dear Dr. Machado, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Rudolf E. Stauber, MD Academic Editor PLOS ONE Additional Editor Comments (optional): The issues raised by Reviewer 3 have been answered satisfactorily. Page 18: please correct Kaplan Meyer --> Kaplan-Meier. Reviewers' comments: |
| Formally Accepted |
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PONE-D-21-05110R2 Outcomes of excessive alcohol drinkers without baseline evidence of chronic liver disease after 15 years follow-up: heavy burden of cancer and liver disease mortality Dear Dr. Machado: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Professor Rudolf E. Stauber Academic Editor PLOS ONE |
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