Peer Review History

Original SubmissionJune 10, 2020
Decision Letter - Punita Dhawan, Editor

PONE-D-20-17649

Prognostic role and biologic features of Musashi-2 expression in colon polyps and during colorectal cancer progression

PLOS ONE

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Punita Dhawan

Academic Editor

PLOS ONE

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

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2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

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3. Have the authors made all data underlying the findings in their manuscript fully available?

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Reviewer #1: Yes

Reviewer #2: Yes

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4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

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5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: RNA-binding protein Musashi-2 (MSI2) controls the translation of proteins that support stem cell identity and lineage determination and is associated with progression in some cancers. The present study explore the prognostic significance of MSI2 in CRC polyps and colon cancer. Its well-planned study that explicitly signifies the role of MSI2 in CRC. However, the data on its role in initiation is still unclear. In order to clarify its role and prognostic significance, it will be interesting to see MSI2 expression alteration in hyperplastic, and serrated polyp types. How microsatellite instability impact MSI2 expression and does its differential expression is associated with mutational status of tumor.

Minor Suggestion: A high level of MSI2 expression in the metastasis was also associated with lymph node positivity (median values with quartiles 270 [250;280] for N0 versus 265 [242;280] for N1 versus 280 [275;290] for N2; average values, 268 versus 262 versus 281; p=0.04), and with higher differentiation grade of the primary tumor (p = 0.000). Clearly mention the p-value observed for the study.

Reviewer #2: The manuscript entitled "Prognostic role and biologic features of Musashi-2 expression in colon polyps and during colorectal cancer progression" by Leonid Kharin et al. Here authors, addressed the critical role of Musashi-2 (MSI2) in colorectal cancer and metastasis. The idea of this article is exciting. The author showed a stage-wise increase in the expression of MSI2. Also, it showed the critical role of MSI cell proliferation and growth. However, colon cancer-promoting role of MSI2 is already reported. The techniques or methodology used is up to date. However, the following points need to be addressed.

1. In one section of the results, the author stated that the expression of MSI2 in primary tumors did not correlate with CDH1 expression. However, in another section using the TCGA data set, the author showed a positive correlation between MSI2 protein expression and CDH1 protein. This ambiguity needs to be addressed.

2. The whole idea of this manuscript to show the significance of MSI2 in prognosis colon cancer progression. It would be better to use regression and ROC analysis methods to show the prognostic significance of MSI2 in predicting disease progression.

3. Figure1A: MSI2 expression (representative IHC images) in adenocarcinoma and liver metastasis is not clear and hard to interpret. Higher magnification insert would help in compression between them.

4. Figure1D: Author showed MSI2 expression comparison between grade 3 with grade1 & 2. It would be better to show compressions among normal and all the grades with representative IHC images of MSI2.

5. Figure4G-H: typo error in Y axis, % colony formation instead of % cell viability.

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Reviewer #1: No

Reviewer #2: No

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Revision 1

December 19, 2020

Punita Dhawan, PhD

Editorial Office

PLoS One

Dear Dr. Dhawan,

We here submit our revised original research article, ““"Prognostic role and biologic features of Musashi-2 expression in colon polyps and during colorectal cancer progression"” (PONE-D-20-17649), to be considered for publication in PLoS One. We greatly appreciate the expert comments and suggestions from the reviewers. We have addressed most of the points raised by the reviewers, and the appropriate changes have been made to the manuscript, as detailed below. A small number of points could not be addressed due to technical reasons which we explain in the following point-by-point response letter and additional data attached. We hope that you agree that the revised manuscript is significantly improved and is now acceptable for publication.

Reviewer #1: RNA-binding protein Musashi-2 (MSI2) controls the translation of proteins that support stem cell identity and lineage determination and is associated with progression in some cancers. The present study explore the prognostic significance of MSI2 in CRC polyps and colon cancer. It is a well-planned study that explicitly signifies the role of MSI2 in CRC.

Response: We thank the Reviewer for the positive assessment of the study.

Point #1. …The data on its role in initiation is still unclear. In order to clarify its role and prognostic significance, it will be interesting to see MSI2 expression alteration in hyperplastic, and serrated polyp types.

Response #1: We have added new images showing the expression of MSI2 in 1 hyperplastic polyp and 1 serrated adenoma (revised Figure 1). These data suggest that MSI2 is not expressed in these early stage lesions. However, the low number of samples available does not allow us to draw statistically significant conclusions, so we are cautious in discussing these results.

Point #2. How microsatellite instability impact MSI2 expression and does its differential expression is associated with mutational status of tumor.

Response #2: This is an important point. In our study, we analyzed 39 tumors that were microsatellite stable, and 5 tumors that had microsatellite instability (numbers now indicated in revised Table 1). We found no impact of microsatellite instability status on MSI2 expression level (p=0.932). We have added a sentence to the results to make this point.

Minor Suggestion: A high level of MSI2 expression in the metastasis was also associated with lymph node positivity (median values with quartiles 270 [250;280] for N0 versus 265 [242;280] for N1 versus 280 [275;290] for N2; average values, 268 versus 262 versus 281; p=0.04), and with higher differentiation grade of the primary tumor (p = 0.000). Clearly mention the p-value observed for the study.

Response for suggestion: We have clarified the description of the results with associated p-values in the main text of the manuscript.

Reviewer #2: The manuscript entitled "Prognostic role and biologic features of Musashi-2 expression in colon polyps and during colorectal cancer progression" by Leonid Kharin et al. Here authors, addressed the critical role of Musashi-2 (MSI2) in colorectal cancer and metastasis. The idea of this article is exciting. The author showed a stage-wise increase in the expression of MSI2. Also, it showed the critical role of MSI cell proliferation and growth. However, colon cancer-promoting role of MSI2 is already reported. The techniques or methodology used is up to date. However, the following points need to be addressed.

Response: We thank the Reviewer for the positive assessment of the study.

Point #1. In one section of the results, the author stated that the expression of MSI2 in primary tumors did not correlate with CDH1 expression. However, in another section using the TCGA data set, the author showed a positive correlation between MSI2 protein expression and CDH1 protein. This ambiguity needs to be addressed.

Response #1: We apologize for the apparent contradiction of these data. Due to limited tissue for both MSI2 and CDH1 staining, we were only able to stain colon tumors from 28 patients in our study using IHC vs. 83 patients in TCGA, providing more statistical power to the TCGA data set. Furthermore, besides difference in the number of patients, different methods were used; IHC in our study vs. mass spectrometry in TCGA. Based on all of these factors, it is clear that additional studies should be done to assess the functional relationship of MSI2 and CDH1 expression. This point was added to the Discussion section.

Point #2. The whole idea of this manuscript to show the significance of MSI2 in prognosis colon cancer progression. It would be better to use regression and ROC analysis methods to show the prognostic significance of MSI2 in predicting disease progression.

Response #2: Thank you for your comment. We applied Cox regression analysis and ROC analysis to the data; however, these methods sdid not show any significance in relationship of MSI2 expression in primary CRC and prognosis in patients. We added this statement to the manuscript Results section.

Point #3. Figure 1A: MSI2 expression (representative IHC images) in adenocarcinoma and liver metastasis is not clear and hard to interpret. Higher magnification insert would help in compression between them.

Response #3: We apologize for the quality of the initially submitted images. We have updated Figure 1A, and replaced old images with the new images in this Figure.

Point #4. Figure 1D: Author showed MSI2 expression comparison between grade 3 with grade1 & 2. It would be better to show comparisons among normal and all the grades with representative IHC images of MSI2.

Response #4: We added new images with Grade 1 – 3 tumors (MSI2 IHC staining).

Point #5. Figure 4G-H: typo error in Y axis, % colony formation instead of % cell viability.

Response #5: We apologize for this typo. We updated the Y-axis in Figures 4G and 4H.

We once again thank the Editor and the Reviewers for a fair review, and hope that the improved manuscript would be suitable for PLoS One.

Sincerely yours,

Yanis Boumber, MD, PhD

Leonid Khaein , MD

Attachments
Attachment
Submitted filename: Response to Reviewers.docx
Decision Letter - Punita Dhawan, Editor

Prognostic role and biologic features of Musashi-2 expression in colon polyps and during colorectal cancer progression

PONE-D-20-17649R1

Dear Dr. Kharin,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Punita Dhawan

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #2: All comments have been addressed

Reviewer #3: All comments have been addressed

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2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #2: Yes

Reviewer #3: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #2: Yes

Reviewer #3: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #2: Yes

Reviewer #3: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #2: Yes

Reviewer #3: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #2: The manuscript entitled "Prognostic role and biologic features of Musashi-2 expression in colon polyps and during colorectal cancer progression" is now looks satisfactory and ready for acceptance.

Reviewer #3: Authors have made revisions that are sufficient to address the concerns. Thanks for all the revisions.

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7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #2: No

Reviewer #3: No

Formally Accepted
Acceptance Letter - Punita Dhawan, Editor

PONE-D-20-17649R1

Prognostic role and biologic features of Musashi-2 expression in colon polyps and during colorectal cancer progression

Dear Dr. Kharin:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Punita Dhawan

Academic Editor

PLOS ONE

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