Peer Review History
| Original SubmissionJanuary 18, 2021 |
|---|
|
PONE-D-21-01891 Aldehyde breath test as a disease marker in patients with esophageal and hypopharyngeal squamous cell carcinoma PLOS ONE Dear Dr. Sasaki, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please address all the comments and questions from the reviewers. In addition, please clarify:
Please submit your revised manuscript by Apr 03 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Jeffrey S Chang Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. In your revised cover letter, please address the following prompts: a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially identifying or sensitive patient information) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings as either Supporting Information files or to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. Please see http://www.bmj.com/content/340/bmj.c181.long for guidelines on how to de-identify and prepare clinical data for publication. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. We will update your Data Availability statement on your behalf to reflect the information you provide. 3. Please provide a sample size and power calculation in the Methods, or discuss the reasons for not performing one before study initiation. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly Reviewer #3: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Sasaki and colleagues determined weather assessing a ratio of acetaldehyde/ethanol in the breath after an alcohol challenge (100mL) could be useful in predicting ESCC and HPSCC. Overall the manuscript is interesting and a few minor comments and suggestions. 1) How the breath test is expected to be used as a tool is a bit unclear and would suggest writing how you would implement this into the medical decision making process. I could see this as more of a screening tool possibly for rural areas of countries that do not routinely have medical care. I do not think that this could be considered a diagnostic tool to detect cancer (as it is more a secondary screen for inactive ALDH2) rather than cancer itself. 2) The ethanol dose chosen is not a weight based dose. This should be mentioned in the limitations and also how this was overcome by calculating an acetaldehyde/ethanol ratio. 3) Bacteria within the mouth also produce a low level of acetaldehyde. Particularly in people who do not often brush their teeth it would be important to speculate or show whether this level of acetaldehyde from bacteria may or may not impact the measurements of acetaldehyde. 4) I would suggest on page 5 the figure 1 table 1 and accompanying text be moved to the first part of the results section. 5) Since Plos One is a general interest journal, it would be helpful to readers to add a paragraph about the why people with an ALDH2*2 variant are more at risk for head and neck cancer. This article Annu Rev Pharmacol Toxicol. 2015; 55: 107–127 doi: 10.1146/annurev-pharmtox-010814-124915 discusses this well (see Table 1) as it shows how the activity of ALDH2 within the esophageal tissue is much lower relative to other gastrointestinal tissues. Adding inactivating ALDH2 genetics leads the environment of the head and neck more at risk for DNA damage, dysplasia and cancer. 6) page 14, line 240. The sentence starting with "Alcohol metabolic..." is unclear and would suggest rewording/rewriting the sentence. 7) page 14, line 243. The idea that genotyping is not suitable for mass screening is not entirely accurate. Perhaps for only certain populations. For example in the United States genotyping kids are now being sold on Amazon.com to detect ALDH2*2. Also the genetics company 23 and me provides whether you have the rs671 SNP as part of their basic report. So the idea of genotyping on a large scale is likely for some people but maybe not for all people. I would reword this sentence in addition to the other section this was mentioned within the manuscript. Reviewer #2: In the paper by Fumisato Sasaki et al. acetaldehyde breath test (ABT) has been used as a disease marker in patients with esophageal and hypopharyngeal squamous cell carcinoma. The main aim of the study was to find a useful and non-invasive tool for the identification of individuals at high risk for pharyngeal and esophageal cancer, as well as for the detection of multiple carcinomas. It is suggested that the use of ABT may help to prevent pharyngeal and esophageal cancer by encouraging individuals to modify their drinking habits. The paper has some merit, but before its possible acceptance a major revision is recommended. Major Comments 1. The results confirm in part the earlier findings of Aoyama et al. i.e., that ABT test may be a useful tool for the identification of ALDH2*2 carriers (ALDH2-deficient alcohol drinkers), who are at high risk for esophageal and head and neck cancers. However, the study is retrospective and thus does not give an answer to the most important question: Can ABT test used to encourage individuals to modify their drinking habits? 2. Alcohol flushing questionnaire and HRA score (Yokoyama et al. 2012) have been successfully used as rather simple screening tools for the detection of ALDH2-deficient and heavily drinking risk groups for esophageal cancer. In the present study the ABT test should be compared HRA score in order to find out does ABT test indeed provide any significant diagnostic improvement in the detection of esophageal and hypopharyngeal cancers. 3. The mechanism behind the elevated A/E-ratio in breath after alcohol administration has not been discussed at all. However, there is enough published data to make that possible. After alcohol drinking ethanol is rapidly diffused to saliva covering the mucosal surfaces of oral cavity, hypopharynx and presumably also oesophagus. This is followed by instant oxidation of ethanol locally to acetaldehyde. In ALDH2-actives this process is mediated almost exclusively by microbes representing normal oral flora. After alcohol drinking salivary acetaldehyde concentration is about two times higher in ALDH2-deficients than in ALDH2-actives. The additional acetaldehyde is delivered to the saliva most probably from the salivary glands. In several studies the highly significant correlation between salivary ethanol and acetaldehyde levels has been confirmed. It should be noted that the evaporation point of acetaldehyde is 20.2 of Celsius. Thus, most if not all of breath acetaldehyde is derived from saliva by evaporation. This may be the case also with most of breath ethanol. The elevated acetaldehyde/ethanol ratio in ALDH2-deficients may thus reflect the changes in acetaldehyde and ethanol concentrations in saliva and in addition may in part be contributed in ALDH2-deficients by acetaldehyde derived from the pulmonary blood to the breath. Minor notes 1. Acetaldehyde instead of aldehyde should be used both in the title and the main text. 2. If possible, ALDH2 genotyping would markedly improve the significance of the findings. 3. Tooth brushing scores: the range in methods is 0 – 2, but in the table 1 it is 0-6?? 4. Patients with SCC appear to be more often men, heavy drinkers and smokers than patients with HC. Do the authors have any explanation? Reviewer #3: Comments to the author, Manuscript #PONE-D-21-01891 Sasaki et al. described the application of an acetaldehyde breath test (ABT) to distinguish between ESD treated SCC patients and a health control group based on a cut-off value from the previously published acetaldehyde-to-ethanol (A/E) ratio. Higher AE value and the number of predicted ALDH2*2 subjects were higher in the SSC patient group. Furthermore, both parameters were also higher in the multiple SSC lesion group than in the single lesion group. The major claim of this study was the potential of using ABT as a disease marker for SSC and for differentiation between single and multiple lesions of ESCC and HPSCC. However, the reviewer finds these claims rather weak based on the data provided in this manuscript. Major concerns and comments: 1. The lack of real ALDH2 genotype data for the subjects in this study. The ABT for ALDH2 genotype diagnosis as published by Aoyama et al. [22] has not been independently confirmed by any other research group. Such a confirmation ought to be carried out in this study. The authors claimed that “because genetic testing is time consuming and cumbersome, it was not conducted in this study”. This is not the case, with various currently available genotyping methods and techniques. Genotyping the number of samples described in this study (n<400) should not time consuming, cumbersome, nor expensive. The review strongly recommends that genotyping be carried out not only for ALDH2, but also for ADH1B. As it is well known that the ADH1B polymorphism (rs1229984) among the Japanese strongly influence the rate of conversation of alcohol to acetaldehyde, the alcohol flushing reaction and risks of ESCC and HPSCC. The information on genotype status from this study can confirm the validity of using A/E ratio and also taking into account role ADH1B gene. 2. There was very significant difference in gender and age distribution between the SSC group and health control group (e.g. male/female ration 95/5 vs 167/108 (Table 1)). It is well known that men and women metabolize alcohol differently. Hence the difference in A/E ratio, alcohol flushing reaction etc. could be simply due the gender difference in the subjects recruited. Same concern for the average age and age distribution described in the two groups. Another example: the lower toothbrushing frequency in the SSC group could simple be due to more men in this group than in the HC group. If men and are in general had worse oral hygiene habit than women, the gender difference can also explain the observed result and there was no real relationship for being more susceptible to SCC cancer. Recommendation: should find a gender, age matched HC group for this study. 3. Table 1 flushing reaction: why no statistical difference between the two groups? Individuals with ALDH2*2 genotype were expected (as shown) to be statistically higher in the SCC group than the HC group. Shouldn’t alcohol flushers should also be higher in the SSC group? 4. Higher A/E ratio in the multiple lesion group could be due to more subject with ALDH2*2 genotype and rather than due to multiple cancer per se. ALDH2*2 is defined by A/E ratio >23.3. Since there are more subjects with A/E ratio in the multiple lesion group, therefore higher A/E values in the multiple group vs. single cancer group is higher is naturally expected. The two are correlated. The A/E ratio from ABT at best is a good predictor of ALDH2 genotype. In addition, this study did not show unequivocally that it can be used to distinguished between single and multiple cancer in a clinical setting, since the overlap of the two groups was significant as show in the figures. In other words, from these data, it only be drawn to conclude that A/E ratio is a good predictor of ALDH2*2 genotypes. The claim of this paper aldehyde breath test can be use as a disease marker in patients with esophageal and hypopharyngeal squamous cell carcinoma is there weak. The authors need to demonstrate that ABT can distinguish cancer per se, not the genotype. Minor mistakes and comments: 1. Page 20, Incomplete sentence: “Alcohol metabolic capacity has been found to vary greatly with regard to race, and 35% of the Japanese population [30].” 2. The “single subgroup” (n = 61) written in the abstract should be (n=63). The reviewer also subject change the total number of SSC patients to 94, rather than 100 as stated in abstract, since 6 patients were excluded for the study. This will keep the numbers more consistent. 3. What is HRA, health risk appraisal? Need to add a few more sentences to describe some details on what elements in HRA for the readers were. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
|
PONE-D-21-01891R1 Acetaldehyde breath test as a disease marker in patients with esophageal and hypopharyngeal squamous cell carcinoma PLOS ONE Dear Dr. Sasaki, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please address the minor comments from the reviewers. Please submit your revised manuscript by Jun 03 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Jeffrey S Chang Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: All comments were addressed. One suggestion would be to revise this introductory sentence for the relative activity of the ALDH2*1/*2 genotype- from the literature the activity is somewhere between 40-60% relative to wild type and <10% activity for a heterozygote relative to wild type ALDH2 seems to be a bit high. "ALDH2 genotypes are classified as follows: ALDH2*1/*1 (homozygous active ALDH2); ALDH2*1/*2 (heterozygous inactive [<10% activity] ALDH2; and ALDH2*2/*2 (homozygous inactive [0% activity] ALDH2) [10-13]" Reviewer #2: Minor comments: Row 1/Title: Acetaldehyde breath test as a disease marker... Should be: ...as a cancer risk marker.... Row 53: The latter prognosis word should be deleted Row 59: ...acetaldehyde dehydrogenase 2 (ALDH2) should be aldehyde dehydrogenase 2 Row 271: Reference number 34 is a review article and written in polish. Better to use the original article: Linderborg K et al. Food Chem Toxicol 2011,49:2103-06. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
|
Acetaldehyde breath test as a cancer risk marker in patients with esophageal and hypopharyngeal squamous cell carcinoma PONE-D-21-01891R2 Dear Dr. Sasaki, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Jeffrey S Chang Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
|
PONE-D-21-01891R2 Acetaldehyde breath test as a cancer risk marker in patients with esophageal and hypopharyngeal squamous cell carcinoma Dear Dr. Sasaki: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Jeffrey S Chang Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .