Peer Review History
| Original SubmissionJanuary 8, 2021 |
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PONE-D-21-00777 The influence of the Antithymocyte Globulin dose on clinical outcomes of patients undergoing kidney retransplantation PLOS ONE Dear Dr. Tedesco-Silva, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== This manuscript is of interest to the renal transplant community. However, it is not acceptable for publication in its current form. The manuscript requires more detailed methodology and results description as pointed out by both Reviewers, especially:
There are also other issues, which are described in detail by the Reviewers. ============================== Please submit your revised manuscript by Apr 22 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Justyna Gołębiewska Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. In your ethics statement in the manuscript and in the online submission form, please ensure that you have discussed whether all data/samples were fully anonymized before you accessed them and/or whether the IRB or ethics committee waived the requirement for informed consent. If patients provided informed written consent to have data/samples from their medical records used in research, please include this information. 3. In the ethics statement in the manuscript and in the online submission form, please provide additional information about the patient records/samples used in your retrospective study, including: a) the date range (month and year) during which patients' medical records/samples were accessed; b) the source of the medical records/samples analyzed in this work (e.g. hospital, institution or medical center name). 4. We note that your study involved tissue/organ transplantation. Please provide the following information regarding tissue/organ donors for transplantation cases analyzed in your study. 1. Please provide the source(s) of the transplanted tissue/organs used in the study, including the institution name and a non-identifying description of the donor(s). 2. Please state in your response letter and ethics statement whether the transplant cases for this study involved any vulnerable populations; for example, tissue/organs from prisoners, subjects with reduced mental capacity due to illness or age, or minors. - If a vulnerable population was used, please describe the population, justify the decision to use tissue/organ donations from this group, and clearly describe what measures were taken in the informed consent procedure to assure protection of the vulnerable group and avoid coercion. - If a vulnerable population was not used, please state in your ethics statement, “None of the transplant donors was from a vulnerable population and all donors or next of kin provided written informed consent that was freely given.” 3. In the Methods, please provide detailed information about the procedure by which informed consent was obtained from organ/tissue donors or their next of kin. In addition, please provide a blank example of the form used to obtain consent from donors, and an English translation if the original is in a different language. 4. Please indicate whether the donors were previously registered as organ donors. If tissues/organs were obtained from deceased donors or cadavers, please provide details as to the donors’ cause(s) of death. 5. Please provide the participant recruitment dates and the period during which transplant procedures were done (as month and year). 6. Please discuss whether medical costs were covered or other cash payments were provided to the family of the donor. If so, please specify the value of this support (in local currency and equivalent to U.S. dollars). 5. We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. In your revised cover letter, please address the following prompts: a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially identifying or sensitive patient information) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings as either Supporting Information files or to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. Please see http://www.bmj.com/content/340/bmj.c181.long for guidelines on how to de-identify and prepare clinical data for publication. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. We will update your Data Availability statement on your behalf to reflect the information you provide. 6. Thank you for stating the following in the Competing Interests section: 'I have read the journal's policy and the authors of this manuscript have the following competing interests: Helio Tedesco-Silva has received speaker’s fees and travel or accommodation expenses for development of educational presentations and scientific advice from Novartis, Pfizer, and Roche. Jose Medina Pestana has received speaker’s fees and travel or accommodation expenses for development of educational presentations and scientific advice from Bristol-Myers Squibb, Novartis, Pfizer, and Roche. Marina Pontello Cristelli has received speaker’s fees for development of educational presentations and travel or accommodation expenses from Novartis and Pfizer. The other authors of this manuscript have no conflicts of interest to disclose.' a. Please confirm that this does not alter your adherence to all PLOS ONE policies on sharing data and materials, by including the following statement: "This does not alter our adherence to PLOS ONE policies on sharing data and materials.” (as detailed online in our guide for authors http://journals.plos.org/plosone/s/competing-interests). If there are restrictions on sharing of data and/or materials, please state these. Please note that we cannot proceed with consideration of your article until this information has been declared. b. Please include your updated Competing Interests statement in your cover letter; we will change the online submission form on your behalf. Please know it is PLOS ONE policy for corresponding authors to declare, on behalf of all authors, all potential competing interests for the purposes of transparency. PLOS defines a competing interest as anything that interferes with, or could reasonably be perceived as interfering with, the full and objective presentation, peer review, editorial decision-making, or publication of research or non-research articles submitted to one of the journals. Competing interests can be financial or non-financial, professional, or personal. Competing interests can arise in relationship to an organization or another person. Please follow this link to our website for more details on competing interests: http://journals.plos.org/plosone/s/competing-interests [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #3: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This study examines the influence of the Antithymocyte Globulin dose on clinical outcomes of patients undergoing kidney retransplantation. The authors compared the efficacy and safety of rATG-5 and rATG-3. The outcomes of kidney transplantation were evaluated comprehensively. However, the research question seems not timely as the FDA has approved rATG as an induction drug with typical dose recommendations of 1.5 mg/kg in 2018. Studies have already compared efficady and safety between rATG-3 with rATG-1.5. Perhaps it isn't an urgent topic now to compare rATG-5 to rATG-3. Below are my minor comments about study design and statistical analysis: 1. Authors mentioned that this is a natural experiental study. However, time bias might be induced by following two comparison groups in different time periods. 2. Ethical approval for this study should be mentioned in the data source section. 3. Lack of statsitical significance for comparisons could be due to the rate events in two groups. Please calculate the statistical power for the major outcomes and discuss it in limitations. 4. Please explain the details of loss to follow-up, e.g., reasons and causes. How was loss to follow up handled in analyses? 5. Table 6 is only for 1 month eGFR < 48 ml/min/1.73 m2. The interaction of rATG and time can be examined in the model, then check the diffences of eGFR by rATG at each time point. . Reviewer #3: Overall: The study addresses an issue for which there is limited high quality data. It suffers from the usual limitations of retrospective studies. The power of the study to detect a difference in the primary endpoint should be stated, or are the author’s wanting to demonstrate non-inferiority – this should be clarified. There a number of clarifications/corrections needed -see details below. I think the study despite its limitations will be of some interest to readers, but I do not think the retrospective data will change practice. The much higher biopsy rate in the 3 mg/kg group needs better explanation, as does this higher rate of biopsy would like negate any economic benefit of the lower dosing. Significance: There is little information about alternative dosing strategies for T cell depleting therapy. It is unlikely that a RCT will be conducted and registry data do not include dosing information -therefore single or multi-center retrospective series are likely to be the best available source of information. Background Suggested Improvements: As outlined in the introduction, retransplant patients are known to have worse outcomes than first transplant recipients and are considered to be at increased immunological risk. The authors may want to consider expanding on the reasons behind the increased immunological risk (intro or discussion) highlighting the potential roles of increased sensitisation and repeat class 2 HLA mismatches (e.g. Tinkham et al 2016). They may also consider providing data on the increasing incidence of retransplant as a proportion of all transplants undertaken (to support the relevance of this study) and also briefly summarise previous studies that have investigated induction regimens in retransplant recipients (e.g. Schold et al, 2015), and moreover outcomes with different ATG dosing regimens in transplantation in general (e.g singh et al, 2018). I feel having this information within the manuscript somewhere will give the reader greater context for the current study. The current study takes advantage of a change in policy in a large single center and compares the standard of care (SOC 5X 1mg/kg dosing used in the period Jan 2010- Jun 2014) versus a novel single 3 mg / kg dose (used in the period June 2014 – Oct 16) in retransplant recipients of a living or deceased donor transplant The key finding was no difference in the composite efficacy outcome of biopsy proven acute rejection, death or graft loss and no difference in safety indicators including 30 day re-hospitalization, CMV infection/disease. There were 100 / 110 patients in each group with 3 year post transplant outcomes reported. Although this is a retrospective study – it is not clear what the type II error is in this relatively small study cohort In addition to the usual limitations of retrospective studies there are a number of clarifications required to assess this study: 1. The study population is unclear: a) The number transplanted – number excluded does not add up to the number included in the study. 2) The study protocol states that study patients in the 1 mg/kg group all had cPRA >50% - but there are clearly patients in this group with cPRA <50%. The method of assessment for DSA should be provided. 2. Baseline characteristics – it is not clear what initial and final Cr and delta Cr mean in Table 1. How was KDPI determined ? – against what reference population? I am not aware that Brazil uses a KDPI calculator. Were there no DCD donor kidneys used? 3. It is unclear what dose the 5mg/kg group actually received because doses were increased or decreased on changes in lymphocyte count after each dose. The actual dose given should be reported – it may be that a significant % of those in the 5 mg/kg group actually received 3 mg/kg or even less. As lymphopenia is an important outcome, it would be important to know the incidence of this in both groups. 4. Outcome assessment – the protocol states all biopsies for rejection were determined using the Banff 2019 criteria – this cannot be the case as most of the patients were included before 2019. What criteria were used to determine/classify AR. Was there retrospective review of all AR biopsies? 5. Outcome assessment – what was the test platform used for CMV antigenemia determination and what were the test parameters. If these changed over time it may be better to report those requiring ganciclovir treatment. 6. Outcome assessment -as there was an imbalance in Everolimus maintenance between groups – and EVR is known to be protective against CMV – was the incidence of CMV different between groups among patients treated with CNI/MPA 7. Outcome assessment – the far higher bx rate in the 3mg/kg cohort requires explanation 8. There were more humoral rejections in the 3 mg/kg group – the authors should convince us that the lower overall level of kidney function in the 3mg/kg group is not due to this. 9. The authors should confirm if any/what other changes in practice occurred over this timeframe. We note, for example, that the change in practice was based on avoiding transplantation in patients with preformed antibody to HLA A, B and DR antigens – does this mean that in the cohort prior to the change patients were being potentially transplanted in the presence of such antibodies (albeit CDC XM neg)? Was flow XM undertaken at any stage during the study? Were any other changes undertaken during the period to improve HLA matching? The authors state that in the first period all patients with PRA >50% received ATG whereas PRA wasn’t taken in to consideration in the second period. This should be clarified as table 1 demonstrates the some patients in the first period have PRA under 50%. Together, this suggests the cohorts may have been of unequal immunological risk? Please address. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-21-00777R1 The influence of the Antithymocyte Globulin dose on clinical outcomes of patients undergoing kidney retransplantation PLOS ONE Dear Dr. Tedesco-Silva, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== ACADEMIC EDITOR: Thank you for all the new information provided and for all explanations included. However, there are still issues that require clarification. “In the rATG-5 group only 4 patients received less than 3 mg/kg, 32 received between 3 and 5 mg/kg” – 36 out of 100 patients in rATG-5 group did not receive 5mg/kg. This is a source of a substantial bias and has not even been acknowledged in the discussion. This is a retrospective analysis, not a prospective randomized clinical trial, the patients should be divided into groups according to the actual dose they received and all results recalculated. Another way would be to exclude this 36 patients from the analysis, but as I understand the study would be then underpowered to even show non-inferiority. Please define the following: „low HLA compatibility, long cold ischemia time, priority criterion, and donor type” “Altogether, the stable eGFR trajectories over the 36 months, the early and persistent low-grade proteinuria, and the higher cg Banff scores in the rATG-3 group suggest that the initial difference in eGFR was derived from unfavorable donor characteristics and recovery from ischemia reperfusion injury.” – but according to data in Table 1 donor characteristics did not differ significantly between both groups, please clarify. ============================== Please submit your revised manuscript by May 21 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Justyna Gołębiewska Academic Editor PLOS ONE [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Tnanks for addressing all reviewer comments. Your responses are appropriate. The revised manuscript is acceptable. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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The influence of the Antithymocyte Globulin dose on clinical outcomes of patients undergoing kidney retransplantation PONE-D-21-00777R2 Dear Dr. Tedesco-Silva, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Justyna Gołębiewska Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-21-00777R2 The influence of the Antithymocyte Globulin dose on clinical outcomes of patients undergoing kidney retransplantation. Dear Dr. Tedesco-Silva: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Justyna Gołębiewska Academic Editor PLOS ONE |
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