Peer Review History
| Original SubmissionDecember 18, 2020 |
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PONE-D-20-39773 Longitudinal changes in IgG levels among COVID-19 recovered patients: A prospective cohort study. PLOS ONE Dear Dr. Alzaabi, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. All comments raised by Reviewer 1 and the additional editorial comments should be addressed in a revised manuscript. Please submit your revised manuscript by May 07 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Jishnu Das, Ph.D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. 2. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 3. PLOS requires an ORCID iD for the corresponding author in Editorial Manager on papers submitted after December 6th, 2016. Please ensure that you have an ORCID iD and that it is validated in Editorial Manager. To do this, go to ‘Update my Information’ (in the upper left-hand corner of the main menu), and click on the Fetch/Validate link next to the ORCID field. This will take you to the ORCID site and allow you to create a new iD or authenticate a pre-existing iD in Editorial Manager. Please see the following video for instructions on linking an ORCID iD to your Editorial Manager account: https://www.youtube.com/watch?v=_xcclfuvtxQ Additional Editor Comments: Overall, the manuscript is technically sound and the data support the conclusions. However, all the points raised by Reviewer 1 need to be addressed. Points 1 and 2 are especially important to supporting the claims that a cutoff of 15 AU/ml is appropriate and the study includes a multi-ethnic population. In addition, the authors should also: 1. Discuss whether they expect the observed longitudinal changes to be the same for each IgG subclass (IgG1, G2, G3, G4) or different by subclass. 2. Explicitly describe the limitations of the study (only focuses on IgG and not other isotypes, only looks at IgG antibodies against S1 & S2 and not other antigens etc). [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The manuscript by Alzaabi et al describes a prospective cohort study of the longitudinal antibody response in adult COVID-19 patients in the UAE over a period of 6 months. Both symptomatic and asymptomatic patients were included within the cohort, and the many clinical parameters were recorded for each patient. The IgG response against SARS-CoV-2 S1 and S2 were determined using an FDA-EUA chemiluminescent immunoassay (CLIA) platform, and the authors find that across patients who returned for all three visits spanning 6 months, peak antibody titers against S1/S2 were observed at the second visit (approximately at month 3 post-symptom onset), and reduced slightly, but not significantly by the third visit (6 months post-symptom onset). They find that of those who returned for visit 3, all patients had developed humoral immunity. Their data is consistent with reports from other countries regarding the longevity of the humoral immune response up to 6 months after symptom onset. The authors perform subsequent analysis between IgG seropositivity and clinical measures and find that seropositive patients at visit 1 had increased levels of LDH and ferratin compared with seronegative patients. The authors note trends in the data, where a majority of subjects have increasing IgG responses between visits, and maintained through day 120, and some patients show decreasing trends between visits. They show that symptomatic and asymptomatic patients do not differ in levels of IgG. The authors present their study in a coherent and logical manner, and the inclusion of a comprehensive discussion of similar studies is welcome and places the author’s data in context. Their data set contributes to our understanding of long-term humoral immunity and against SARS-CoV-2 in populations around the globe. Major points: 1. Were any control samples (pre-pandemic or non-COVID) included in the IgG analysis and used to establish the baseline cutoff of 15 AU/ml? 2. The authors mention that the patients represent a multi-ethnic and global population but only stratify the patients into Emerati national vs non-national. While the authors note that there were no differences in IgG across ethnicity/race, does that analysis refer to Emerati national vs non-national or to a more thorough breakdown and analysis of ethnicity/race? 3. It would be helpful if the authors could also plot the individual data points for the figures 2 and 3 in an overlay of the IQR plot, showing the variation across patients at each time point. 4. Figure 4 is a little confusing to me in the way it is currently presented, and although I understand the point that the authors are making with both Figure 4 and Table 3, I wonder if the maybe color coding each visit separately would help the readers correlate Figure 4 with Table 3 better. Another possibility may be to present all three visits on the same graph for all patients to give the readers a sense of which subjects responses are increasing/decreasing across the 6 months, or if there are some patients who are initially increasing, and then decrease. Also, it seems like the order of the graphs might make sense to switch to the 4th (Increase/Decrease in IgG response v1 vs v3) and 3rd graphs (Increase/Decrease over 90 days) to flow better with the text. 5. The number of clinical parameters that the authors collect on each patient represents a rich dataset for their COVID patients – does the anti-spike IgG response correlate with any clinical parameters in a regression analysis? A multivariate analysis approach of the data set may indicate parameters such as duration of viral shedding, treatments, or disease severity as drivers of IgG induction and maintenance. Along those lines, as the authors are able to divide patients into those whose titers increases vs those whose titers decrease, another interesting analysis would be if any of the clinical parameters could be used to predict increasing or decaying antibody responses. These analyses would help increase the relevance of the author’s work. Minor comments: 1. Open parentheses missing in line 3 2. Line 22: suggest changing to “COVID-19 patients”. 3. Please include the dilutions (if any) of sera used in serology testing in the Methods. 4. Figure 4 is missing the labels for the graphs (a, b, c, etc.), and are labeled incorrectly as 2a, 2b, 2c etc. in the legend. Reviewer: Bronwyn M. Gunn, PhD. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Bronwyn M. Gunn [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Longitudinal changes in IgG levels among COVID-19 recovered patients: A prospective cohort study. PONE-D-20-39773R1 Dear Dr. Alzaabi, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Jishnu Das, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-20-39773R1 Longitudinal changes in IgG levels among COVID-19 recovered patients: A prospective cohort study. Dear Dr. Alzaabi: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Jishnu Das Academic Editor PLOS ONE |
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