Peer Review History
| Original SubmissionOctober 9, 2020 |
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PONE-D-20-31823 Serum N-terminal telopeptide of type I collagen as a biomarker for predicting bone density loss in patients with Crohn disease PLOS ONE Dear Dr. Sugimoto, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. The first part of this manuscript showed that elevated serum NTx could be a useful marker for predicting the loss in femoral bone density in patients with CD, but the data are not strong compared to the existing literature on bone resorption markers. The second part analyzed the relationships between anti-TNFa treatment and serum NTx levels, and the link with bone resorption: the conclusions of this part are not supported by the data. The submitted study is very similar to previous work from the same authors: Sugimoto et al. Dig Dis Sci 2016. An increased serum N-terminal telopeptide of type 1 collagen, a biochemical marker of increased bone resorption, is associated with infliximab therapy in patients with Crohn’s disease. In this case, PLOS ONE requires that authors provide a sound scientific rationale for the submitted work and clearly reference and discuss the existing literature. Moreover, the conclusions/interpretations on the relationships between sNTx, osteoporosis and anti-TNFa therapy are not supported by the data, and therefore do not meet this PLOS ONE publication criteria. Submission cannot be accepted unless these two criteria for publication are met. Please submit your revised manuscript by 3 months. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Mathilde Body-Malapel Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please provide a sample size and power calculation in the Methods, or discuss the reasons for not performing one before study initiation. 3. Please note that PLOS does not permit references to “data not shown.” Authors should provide the relevant data within the manuscript, the Supporting Information files, or in a public repository. If the data are not a core part of the research study being presented, we ask that authors remove any references to these data. 4. Please provide theproduct number and any lot numbers of the immunoassays purchased for your study. 5.We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. In your revised cover letter, please address the following prompts: a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially identifying or sensitive patient information) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings as either Supporting Information files or to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. Please see http://www.bmj.com/content/340/bmj.c181.long for guidelines on how to de-identify and prepare clinical data for publication. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. We will update your Data Availability statement on your behalf to reflect the information you provide. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: No ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Low BMD is considered to be extra-intestinal manifestations of IBD. Managing extra-intestinal complication is a difficult clinical problem and also a timely topic. Although the sample size was small and only 41 patients were included, this study prospectively assessed the association between serum NTx level and bone density loss in CD patients. They found that an elevated serum NTx could be a useful marker for predicting a decrease in the femoral bone mineral density in CD patients. Anti-TNF-α therapy maintained an elevated serum NTx level, suggesting that treatment with anti-TNF-α may help control increased bone resorption in CD patients. The sample size of this study was small, further analyses are recommended. Minor revision Personally, using ROC analysis can be added in this study to further confirm the diagnostic and predictive value of serum NTx level and other items. Reviewer #2: Ishida et al have submitted a manuscript describing a two-year follow-up of a cohort of 41 individuals with Crohn’s Disease, hoping to identify predictors of bone loss (as measured by DXA Z-scores) in this interval. They argue that elevated basal serum NTX values predicted such bone loss, and also try to establish a relationship between treatment with anti-TNFalpha and NTX evolution. Overall, while the analysis of bone outcomes in persons with CD is well warranted as a research topic, the manuscript is poorly written, some conclusions are not supported by their data, and their interpretation of results is mistaken. Above all, their main finding, that serum NTX at baseline predicted bone loss in 2 years, is absolutely not novel, indeed it is expected – the capacity of bone turnover markers to predict bone loss has been well established in a variety of settings. Major issues: 1) It is unfortunate that the authors have used serum NTX to analyze bone resorption. An international effort reported by Vasikaran and colleagues in 2011 (Osteoporos Int 22:391–420) has elected serum CTX as the resorption marker of choice, and therefore the bulk of the literature has been focused on this marker, which is also most used internationally in clinical settings. Therefore, the translation of these findings to general practice settings is compromised (would CTX behave in the same fashion – we won’t know). Indeed, because serum NTX determination is seldom used, the authors should describe in more detail its methodology: what is their precision? Intra and inter assay variation? Their main finding is a statistically significant 20 vs 17 difference in s-NTX between groups, but what is the clinical significance of that? 2) Statistical analysis: In tables 2 to 4, a sentence in the footnote claims that “Certain data represent the mean±standard error of mean values”. This is confusing, please be more specific to what each specific point of data (each line) represents. 3) The data shown in Table 4 is not comprehensible. In the text (lines 155-156) and also in the table mention “average of the initial and secondary” measurements, but what is the relevance of showing an average in this case? It would make a lot more sense to show intra-individual variation in biomarker levels between the two points. 4) Lines 187-189 and Figures 1b and 1c: It seems to me that these significant correlations are largely driven by one outlier in each setting. Please perform a statistical analysis excluding outliers to see if these correlations still hold. 5) Lines 198-201 and Figure 2: What is described in the text is the complete opposite of what is shown in Figure 2 --> Which one is wrong, the text or the group labeling in the figure? Judging by the points that the authors make in the discussion, I believe the figure is right, and that the group that kept high s-NTX levels after two years is the anti-TNFalpha treated group. If that is the case, the authors argue in the discussion (lines 274-275) that “The NTx level significantly decreased after 2 years in CD patients who did not receive the anti-TNF-α therapy; this may be related to the deterioration of bone metabolism” – this concept does not hold. Indeed, the decrease in NTX after two years in this group is a good sign, since the authors themselves have shown that higher s-NTX predicts bone loss! It may well be that the anti-TNF-alpha therapy is stimulating bone resorption on top of the effects of inflammation and malabsorption in people with CD and therefore resulting in more damage to the bone. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Serum N-terminal telopeptide of type I collagen as a biomarker for predicting bone density loss in patients with Crohn disease PONE-D-20-31823R1 Dear Dr. Sugimoto, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Mathilde Body-Malapel Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This revised research added the ROC analysis and found the AUC of NTx, which predicts the progression of osteoporosis (ΔZ score <0), was 0.826. That is to say, NTx showed good diagnostic and predictive value. Besides, received comments also answered problems proposed by the other reviewer. Personally, this revised manuscript could be accepted. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No |
| Formally Accepted |
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PONE-D-20-31823R1 Serum N-terminal telopeptide of type I collagen as a biomarker for predicting bone density loss in patients with Crohn disease Dear Dr. Sugimoto: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Mathilde Body-Malapel Academic Editor PLOS ONE |
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