Peer Review History
Original SubmissionDecember 28, 2020 |
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PONE-D-20-40749 Studying genetic population structure to shed light on the demographic explosion of the rare species Barbitistes vicetinus (Orthoptera, Tettigoniidae) PLOS ONE Dear Dr. Martinez-Sañudo, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Apr 10 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: he authors present analyses of mtDNA variation intended to shed light on the origin of a recent pest insect outbreak. The analyses are sound as are the conclusions. I have two main comments and a few minor issues outlined below. line 169 I think this paragraph should be deleted since the tree is not mentioned (maybe on line 379?) or presented anywhere. Nor is it needed given that assumptions of bifurcating relationships is likely violated (which is presumably the justification for the TCS network). lines 309-313 One major issue seems to be neglected: how do the estimates of the timing of demographic change compare to the ideas presented in the introduction that the change has occurred very recently? The inferences from molecular data indicate a post-Pleistocene time frame for demographic expansion, but the introduction (line 54) indicates the outbreak has occurred over the last decade. As presented, the attempt to time the demographic events seems to indicate that the authors are thinking of the very recent outbreak, though I suspect, given the nature of the data and the analyses, that only historical events can be detected. I suggest the authors re-arrange the questions and methods to separate these issues and to be more clear on why they are interested in timing the demographic events (which don't have anything to do with the last decade). Temporal sampling with 100's to 1000's of bi-parentally inherited markers might be required to detect changes in Ne over the very near term. minor comments line 41 this is not clear - what is meant by "genetic origin"? line 44 how does mtDNA help with biocontrol strategies? This idea could be expanded by including some of the logic that appears in the discussion. line 52 I think that some more precise language is needed rather than "ecological balance", a phrase that has had a controversial and tortuous history in ecology. line 97 DO the authors have the requiste geographical sampling to answer this question of alien origin?? It seems that some basis for comparisons is required for this. line 114 Change "expositions" to "exposures" lines 106-121 refer to map fig 1 line 169 I think this paragraph should be deleted since the tree is not presented and not mentioned (maybe on line 379?) or presented anywhere. Nor is it needed given that assumptions of bifurcating relationships is likely violated (which is presumably the justification for the TCS network)? line 181 delete "a" before coalescent line 192 delete "occurred" line 216 it might be useful to describe what you are looking for, i.e. what distinguishes numts from mtDNA genes? line 229 delete the percent sign line 379 what aspects are unresolved? The data presented seem to me to provide a fairly clear picture. Further, why "phylogenetic" resolution? The network clearly demonstrates shared haplotypes indicative of gene flow or, more likely, incomplete lineage sorting for which phylogenetic methods are inappropriate - see comment above (given assumption in phylogenetic methods of bifurcating relationships and extinct ancestral states). FIg 1 top: what do the lines within haplotype circles signify? I think the authors might be indicating proportions shared between regions (haplotypes A1 and I1) or among subregions (i.e. A6, I5) but this is not clear from the colouration. Reviewer #2: A great application of these techniques. It would be nice to see similar application to other pest species. I have only minor questions: (1) How significant is the limited geographical mobility to your interpretation? Would you not come to similar conclusions on species that can disperse but usually show site fidelity? (2) I would like to see some discussion of application to other species. (3) What light can such techniques shed on the efficacy of geographically-based pest control methods (such as quarantines)? ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Shripad Tuljapurkar [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. 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Revision 1 |
Studying genetic population structure to shed light on the demographic explosion of the rare species Barbitistes vicetinus (Orthoptera, Tettigoniidae) PONE-D-20-40749R1 Dear Dr. Martinez-Sañudo, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Bi-Song Yue, Ph.D Academic Editor PLOS ONE |
Formally Accepted |
PONE-D-20-40749R1 Studying genetic population structure to shed light on the demographic explosion of the rare species Barbitistes vicetinus (Orthoptera, Tettigoniidae) Dear Dr. Martinez-Sañudo: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Bi-Song Yue Academic Editor PLOS ONE |
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