Peer Review History
| Original SubmissionNovember 22, 2020 |
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PONE-D-20-35876 Ischemic Stroke in PAR1 KO Mice: Decreased Brain Plasmin and Thrombin Activity Together with Decreased Infarct Volume PLOS ONE Dear Dr. Shavit-Stein, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses all of the points (including new experimental data) raised by two established and one junior investigators during the review process. Please see below in the Reviewers' comments section for the detailed evaluation of your manuscript. Please submit your revised manuscript by April 30, 2021. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: No Reviewer #3: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: No Reviewer #3: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: No Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: 1. The study has been presented in a very organized manner and it was very easy to follow however, it would be better if there is consistency for naming ischemic hemisphere (only ipsilateral or only ischemic hemisphere through out the article). 2. The total number of mice used for the study as well as individual n number for different analysis need to be included. 3. Excluding n=16 mice from study seems quite high so number of animals used for NSS needs to be specified. 4. Why the NSS study was not performed at 24h time point rather that 2 hours post stroke time point as all the activity assay was done at 24 hours post stroke. 5. For both Plasmin and Thrombin activity assay results, in case of WT the left and right hemisphere results are substantially different in fact could be statistically significant. It needs substantial explanation for such a difference. 6. The author showed spatial difference in plasmin and thrombin activity, So is there any study showing the spatial difference in the expression of PAR1 expression in brain? 7. The author did a great job explaining the importance and limitation of the study in the introduction and discussion part. Reviewer #2: This manuscript investigates the role of PAR-1 in a mouse model of ischemic stroke. The main conclusion is that the activities of plasmin and thrombin are lower in the infarct regions of PAR-1-KO mice compared to WT mice and that this correlates with smaller infarct size in the PAR-1-KO mice. 1. In the abstract and introduction (pages 2 and 3) it is stated that PAR-1 is activated by thrombin and plasmin. It would be correct to say that PAR-1 is activated/ inactivated by many proteases that are likely to be involved in ischemic stroke. 2. Correct nomenclature and reference to the PAR-1-KO mice should be given on page 5. 3. In the methods section there is a considerable overlap in the description of plasmin and thrombin activity assays. It appears that they are essentially the same except for the substrate. It may be easier to give a composite description for both and point out the differences (page 6 and 7). 4. Substrate concentration and details are missing in the description of plasmin assay (page 6). 5. From the discussion about these assays on page 14 it is clear that the methodological description of these assays is completely inadequate. "Pretreatments" and sequential measurement of plasmin and thrombin activity should be described correctly and in more detail. 6. The logic behind the use of permanent ischemia versus transient ischemia should be described in detail (page 14). 7. TTC staining images should be shown. 8. The discussion is quite lengthy and touches on many points points outside the scope of the current study. It should focus more closely on how these results (might) explain the differences observed in PAR-1-KO mice. 9. Fig. 1: (i) NSS score at 24 h should also be shown. (ii) Number of animals in each group should be indicated in the figure legend. Which statistical test was used in each of the panels should be indicated in the figure legend. (iii) The statement related to description of panel C does not seem to be statistically tested. 10. please apply the above criteria to the other manuscript figures/ legends. 11. It is not clear why plasmin activity is negative in some samples (Figure 2). 12. Supposedly, specific substrates for plasmin and thrombin have been used to measure enzyme activity. Their specificity is supported by the use of anti-plasmin and NAPAP respectively. However, neither the substrate, nor the inhibitor, are specific for the said enzymes. Inhibitory antibodies would be a more suitable choice to demonstrate specificity of these assays. Reviewer #3: Ischemic stroke is a major health issue that has limited treatment options. PAR1 is activated by thrombin and plasmin and has important signaling roles in the central nervous system. The report by Shavit-Stein is a correlational study that examines infarct size, plasmin activity, and thrombin activity in an ischemic stroke model in wild type and PAR1 knock out mice. The PAR1-KO animals had a decrease in infarct size. Brain slices from the PAR1-KO mice had a decrease in thrombin generation and plasmin generation compared to wild type mice. The reported decreases in infarct size, thrombin and plasmin are ~20%, 20%, and 50%, respectively. The authors should comment on the biological significance of these differences. Are the differences in these three parameters expected to be a result of the injury? or a physiological response to the injury? The authors have focused on the neuronal cells. However, other cells may also contribute to the observations. Identifying which cells are driving the phenotype will aid in developing hypothesis for determining the underlying mechanisms. The manuscript would be significantly strengthened with additional experiments that link the three observations (infarct size, thrombin, and plasmin) or provide potential mechanisms for how they could be related in this stroke model. The authors should clearly state the number of animals used in each experiment. It appears to be 3-6. What is the required number of animals for these studies to determine true differences (power analysis). The authors highlight that the mouse model allows them to examine PAR1's impact on the CNS without a contribution of platelets due to differences in PAR expression across species. This is a valuable tool, however the impact of interfering with PAR1 signaling in humans should be addressed in the Discussion. Given that the PAR1 antagonist (vorapaxar) is contraindicated for stroke, this is particularly relevant. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Ischemic Stroke in PAR1 KO Mice: Decreased Brain Plasmin and Thrombin Activity Along with Decreased Infarct Volume PONE-D-20-35876R1 Dear Author, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Vardan Karamyan, Pharm.D., Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #2: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Abdullah Al Shoyaib Reviewer #2: No |
| Formally Accepted |
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PONE-D-20-35876R1 Ischemic Stroke in PAR1 KO Mice: Decreased Brain Plasmin and Thrombin Activity Along with Decreased Infarct Volume Dear Dr. Shavit-Stein: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Vardan Karamyan Academic Editor PLOS ONE |
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