Peer Review History
| Original SubmissionOctober 28, 2020 |
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PONE-D-20-33791 Preadmission kidney function and risk of acute kidney injury in patients hospitalized with acute pyelonephritis: a Danish population-based cohort study PLOS ONE Dear Dr. ,Henriette Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands.Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.Please address some of them comments asked by the reviewers as the manuscript may need some minor revisions before being considered for publication.Please submit your revised manuscript by Jan 23 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please clarify whether there was any ethical oversight over the study. Was all data used publicly available? 3. We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. In your revised cover letter, please address the following prompts: a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially identifying or sensitive patient information) and who has imposed them (e.g., an ethics committee). 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Additional Editor Comments: 1.In your paper ,The criteria used for AKI definition as per the guidelines from KDIGO, AKI was defined as an at least 1.5 times relative increase from preadmission sCr, a relative increase of at least 1.5 in sCr within a period of seven days, or an absolute increase in sCr of at least 26.5 µmol/l within a period of 48 hours, I was curious how many cases where diagnosed based on change in creatnine of at least 26.5 µmol/l and what percentage were diagnosed based on relative increase in creatnine of at least 1.5 from baseline within a period of seven days .As during episode of AKI creatnine values tend to fluctuate before it reaches a steady state. 2.Most of the time treatment in pyelonephritis varies from 7-14 days depending upon infection underlying condition and organism being treated, just curious to know why the criteria of 30-day risk of acute kidney injury was used. As shorter time frame linked to development of AKI immediately after development of pyelonephritis or to resolution of pyelonephritis makes the correlation easier to undestand and clinically significant as anything later after resolution of pyelonephritis may add other factors in development of AKI [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This is a database study that looks at the incidence of AKI in patients admitted with pyelonephritis, stratified by pre-existing CKD. I think that on whole the conclusions support the data. I did notice that the female predominance of pyelonephritis increases with increasing GFR and the male:female ratio at the lowest eGFR was almost equal. That suggests that advanced CKD may predispose to pyelonephritis, which is an interesting observation. I am also interested by the 10% of cases that occurred more than a week after admission. This may be related to antibiotics but probably does not reflect the infection itself. These points should be addressed in the discussion. Reviewer #2: **Please note that the authors have acknowledged that Danish law prohibits the sharing of health data, and this can only be accessed by researchers who meet specific criteria to access this confidential data. I would like to thank the authors for their painstaking endeavor to provide an interesting insight into the association of AKI and acute pyelonephritis. I hope to offer some constructive criticism to enhance the scientific objectives of the authors: Language and stylistic considerations: Line 116 - "Measurements seven days before admission were not included to avoid preadmission eGFR being affected of acute illness due to pyelonephritis." - For the sake of clarity, please consider changing to ""Measurements in the seven days preceding admission were not included to avoid preadmission eGFR being affected of acute illness due to pyelonephritis." Line 118 - "...assuming that all patients were Caucasian, which is a reasonable assumption to make of the Danish population." - This is probably a potential source of error for approximately 9% of the population that have a non-Western background (2017 statistics - citation below). I do not disagree with the authors pragmatic approach, but perhaps this potential (relatively minor) source of error could be included as a limitation of the study. Line 242-243 - "A total of 89.3% of the AKI cases (i.e. 1,882 cases) 243 occurred within one week after hospital admission." - For the sake of clarity, please consider changing to "A total of 89.3% of the AKI cases (i.e. 1,882 cases) 243 occurred in the first week from the day of hospital admission." The latter sentence makes it clear that the AKI episode occurred relatively early after te acute illness was diagnosed. The original sentence might mislead readers into thinking that AKI may have occurred after the admission concluded (ie. after the patient was discharged). Methodology / results considerations: 1. Obstructive nephropathy at baseline would be a major risk factor for both chronic kidney disease and for the subsequent development of pyelonephritis. Was this factor considered? 2. Nephrolithiasis, particularly when obstructive, could result in both AKI and pyelonephritis. This would be an important data point to tease out, if possible. Furthermore, even non-obstructive stones can serve as a nidus of infection and result in a higher likelihood of recurrence of infection (and possibly AKI). In a retrospective analysis, the authors would be limited by the accuracy of ICD-10 data available from these hospitalizations, but I suspect many readers would also want to know if the above points were considered. If this data is not available or too cumbersome to obtain, please consider acknowledging it as potential limitations. 3. Another interpretation which the authors could consider mentioning is that 89.3% of cases of AKI were diagnosed within the first week from the day of admission, which can likely be attributed to sepsis. However, the remaining ~10% of cases do seem somewhat distant from the original septic insult to be directly attributed to acute pyelonephritis. While the authors do not speculate as to the *cause* of the AKI, it is plausible that potentially nephrotoxic agent exposure (IV contrast, certain antibiotics or NSAIDs for pain relief) may account for the delayed AKI cases. It is hard to say if all this needs to be included, but this could make for some thoughtful discussion, as long as the authors feel that it does not digress too far from their topic of research. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Atul Bali, MD [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Preadmission kidney function and risk of acute kidney injury in patients hospitalized with acute pyelonephritis: a Danish population-based cohort study PONE-D-20-33791R1 Dear Dr. Graversen, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Bhagwan Dass, MD Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-20-33791R1 Preadmission kidney function and risk of acute kidney injury in patients hospitalized with acute pyelonephritis: a Danish population-based cohort study Dear Dr. Graversen: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Bhagwan Dass Academic Editor PLOS ONE |
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