Peer Review History
| Original SubmissionAugust 13, 2020 |
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PONE-D-20-25390 Change detection of auditory tonal patterns defined by absolute versus relative pitch information. A combined behavioural and EEG study. PLOS ONE Dear Dr. Coy, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Note both reviewers have major concerns about the data analysis. It is highly recommended to include the additional source space analysis or PCA analysis in the revision. Such analyses may be critical to support the conclusion in the present study. Please submit your revised manuscript by Jan 02 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Qian-Jie Fu, Ph.D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This study describes the behavioural and spatiotemporal EEG dynamics associated with detecting melodic oddball deviants that differ in either absolute pitch or relative pitch. A primary purpose was to confirm that complex auditory representations are “automatically” coded in memory even in the absence of absolute pitch information. A secondary purpose was to describe any behavioural (RT) and spatio-temporal EEG differences in so-called “automatic” (as indexed by the MMN and maybe the P3a) and “intentional” (as indexed by the N2b and P3b) processes involved in the active detection of auditory irregularities defined by either absolute pitch deviants or relative pitch deviants. The main results show that while MMN and P3a latencies are similar when detecting absolute and relative pitch deviants, N2b and P3b latencies are longer to relative pitch deviants compared to absolute pitch deviants. This suggests that complex auditory representations may be coded automatically even in the absence of absolute pitch information, while intentional processes are slower to respond to auditory representations in the absence of absolute pitch information. In general I think this work is well done; the goals are properly-justified, the study design was well thought-out and executed, analyses were mostly clear and properly-justified (but see major revisions), and the results provide interesting insight into the temporal dissociation between automatic coding of auditory representations and intentional higher-order processing (attention, stimulus matching) (but again, see major revisions). I have one major concern and a few minor concerns. I am, therefore, requesting accept with Major Revisions, but I have every confidence the major revision will be addressed. Major Revisions Please explain in more detail how you determined that there is, in fact, both an MMN and an N2b in the absolute pitch condition. While I’m sympathetic to the argument that “should” be both components present in the absolute condition, and that the difference wave in Figure 3 represents a likely spatiotemporal overlap between the two conditions, I am, however, concerned that the MMN and N2b scalp maps look very similar. My understanding is that the N2b, unlike the MMN, does not typically have an inversion at temporal sites (e.g. Näätänen & Gaillard, 1983; Sussman et al., 2002 see Fig 2), but the N2b scalp map shown in Figure 3 appears to have just as much source located around temporal/posterior sites as does the MMN scalp map. Since one of the main conclusions of the study is that automatic coding of auditory patterns occurs at a similar timecourse regardless of whether absolute pitch information is available (as indexed by the latency of the MMN), but that intentional processes are slower to detect relevant pitch deviants (as indexed by the latency of the N2b as well as the P3b), it’s vital to your argument that you make clear that both the MMN and N2b were, in fact, generated in each condition. References: Näätänen, R., & Gaillard, A. W. K. (1983). 5 The Orienting Reflex and the N2 Deflection of the Event-Related Potential (ERP). In A. W. K. Gaillard & W. Ritter (Eds.), Advances in Psychology (Vol. 10, pp. 119–141). North-Holland. https://doi.org/10.1016/S0166-4115(08)62036-1 Sussman, E., Winkler, I., Huotilainen, M., Ritter, W., & Näätänen, R. (2002). Top-down effects can modify the initially stimulus-driven auditory organization. Cognitive Brain Research, 13(3), 393–405. https://doi.org/10.1016/S0926-6410(01)00131-8 Similarly, please make clearer how you determined the latency of the N2b given the overlap between MMN and N2b. You explain that the MMN latency was defined as the point at which the initial negative deflection reached 60% of the peak amplitude, but it’s not clear how you determined the latency for the N2b. Which slope and which peak amplitude did you use to calculate the latency of the N2b in the absolute condition? Finally, please make clearer from which channels did you extract the data for your statistical comparisons. From Table 1 it looks like you picked Fz for the MMN and FCz for the N2b. Why did you choose these channels? The table also seems to show that peak difference wave amplitude for the transposed condition, for which there is potentially a clear MMN, was somewhere in the FC region (this is also confusing, see minor revisions), while the N2b in that same condition peaked somewhere in the F region. There are similar discrepancies for P3a and P3b subcomponents. Minor Revisions General note: please make sure all your variables are italicized (namely d’s and η^2) Methods section: if it’s possible and not too much trouble, I’d appreciate a rough estimation of when the deviants actually deviated from the preceding standards (i.e. which note within the deviant stimulus was unexpected relative to the previous standard). I understand difference waves weren’t calculated this way (deviant – immediately preceding standard), but I’d like to know approximately when the average deviation occurred. You state that in the absolute condition the first note was always fixed at 400 Hz, and then you imply that the second note consistently deviated from the previous standard, but I’m not sure if I understood you correctly. This will help provide some context for the ERP latencies you’re reporting, since presumably the latencies (particularly of the early components) reflect about when the auditory and attentional systems detected a violation of the ongoing auditory regularity. If that varied a lot deviant by deviant, and if one condition varied more than the other, then the meaning of the latency differences between conditions becomes harder to interpret. At the very least I think you should provide a range of which notes could have represented deviations from the preceding standards, and perhaps address this potential issue in the discussion. Methods section: how many different tone patterns were there? Were they randomly generated or predefined? Results section: please remind the reader of the timeframes you’re using to define each subcomponent in their subsequent “latency” section of the results Table 1: Why are some of the channel labels in EP ambiguous (i.e. F instead of Fz or F1)? Why not state exactly which channels each row is referring to? Do the rows represent averaged data from multiple channels? If so which channels? Please clarify this in the caption of the table. Lines 59-60: “…facilitating the recognition of auditory objects despite large variation in spectral features”. This statement should have a reference. Line 69: please supply more references that speak to the “rich body of research” Line 88: “statistically robustly”. I assume you mean that there was a strong positive correlation between deviant ERP amplitude and the number of preceding standard stimuli? If that’s the case then I don’t think you need to include “statistically robustly”, as it reads as a subjective evaluation of the correlation. It’s enough to say that the amplitude increased as a function of the number of preceding stimuli. Lines 107-109: Please support this sentence with a reference. Line 564: “the reported P3a amplitude decrease and latency increase…”. Fig 4a shows that P3a latencies were not different. Please clarify. Lines 565-568: Please include references for how the P3a is associated with any of the listed stimulus features/cognitive demands Line 586: “notably and significantly reduced…”. Please refrain from using subjective evaluations (notably) when statistical comparisons suffice (statistically). Reviewer #2: This paper is a follow up of a previous paper by Bader et al, in which, during a passive listening paradigm, no difference in MMN was found in response to pattern violations with absolute pitch or relative pitch changes. This paper did found decreased amplitude and increased latency of P3a, however, in the relative pitch compared to absolute pitch condition. The present paper conducts a similar study, but now in an active paradigm in which participants are asked to indicate when a repeating stimulus pattern changes, in conditions involving absolute versus relative pitch cues. The basic findings were that now P3a was similar in amplitude and latency across for the relative and absolute pitch conditions. And N2b and P3a were both delayed in the relative pitch compared to absolute pitch conditions. The paper is interesting in attempting to dissect the stages of processing in order to determine where relative and absolute pitch information in patterns are processed similarly and differently. However I have some concerns. 1. A general difficulty with the approach is that there is not wide consensus in the literature as to exactly what these 4 components represent, leaving the paper with considerable speculation as to the meaning of the results. 2. The literature review on MMN, P3a and relative pitch is not very complete. For example, it is stated “Since then, a rich body of research has emerged, enabling a better understanding of the processing of complex sounds”, with no references given. For example, the work of Trainor and colleagues showed MMN and P3a responses for relative pitch information in non-musicians (e.g., 2002, J Cog Neuro) and infants (e.g., He et al., 2009 Eur J Neurosci). As well, musical training may significantly modify these brain responses to relative pitch information (e.g., Fujioka et al., 2004; J Cog Neuro), as may exposure to a tonal language, so the generalizability of the results should be considered in the discussion. 2. Methodologically, I think several major issues need to be addressed as follows. 2a. Stimuli: the stimulus patterns are very brief with the tones comprising them only 50 ms. The whole patterns are only 300 ms. Given that the temporal window of integration is 150 – 200 ms, it is not clear that these are perceived as patterns in the sense of a sequence of events. Rather they are likely processed as single units. 2b. The 4 components of the ERPs (MMN, N2b, P3, P3b) are difficult to separate and extract using waveforms from surface electrodes. Especially given the different topographies of the components that overlap, and the differences between conditions, the analyses should be done after source localization of each components has been done. Right now, not only can the components not be cleanly separated, but the ANOVA statistical approach is complicated by many factors and complex interactions. This makes the paper very difficult to read and raises the problem of many statistical tests. All of this would be much simpler and cleaner if done in source space. Furthermore, if I understand correctly, single electodes were analyzed, thus ignoring the rich information available from having collected 64 channels of data. Again sources space analysis would include all information across the scalp. Alternatively some kind of PCA analysis might also be able to better separate and characterize the components by utilizing all of the data from all electrodes over time. 2c. The jackknife approach needs more explanation. It is not clear if it was applied across participants or whether an individual latency was calculated for each participant. 2d. The use of when 60% and 100% of the peak of some of the components was not clear and seems arbitrary in order to make arguments that some effects of significant at 60% even though not at 100%. This needs to be justified or should be removed. 2e. There is a fundamental problem in separating and distinguishing the MMN and N2b components in the absolute pitch condition. Thus, without doing some kind of source localization, both the MMN and N2b results are unclear. 3. Results/interpretation 3a. MMN was actually found to be a bit larger in absolute condition compared to the relative condition, which is actually not in agreement with Bader et al. However, this is inconclusive as, with the current analysis methods, it was not really possible to separate MMN and N2b. The authors argue that because of this MMN is not really different across conditions, but I think this remains unknown. 3b. With respect to N2b it was found to be later in the relative than absolute pitch condition. However, this is not completely convincing as the MMN and N2b could not be completely separated. This delayed N2b for relative pitch is interpreted as increased discrimination demands, but it seems that other interpretations might be possible. 3c. The amplitude of the N2b was “descriptively” smaller in amplitude for the relative pitch case, but not statistically different. A somewhat convoluted argument is made that N2b might reflect both “representational strength” and “attention” and that the lack of significant amplitude difference might reflect some combination of reduced “representational strength” and increases “attention in the relative pitch case. This seems overly speculative. 3d. No amplitude or latency differences were found for P3a for relative and absolute conditions. This is consistent with the idea that top-down processes (attention?) compensate for any increased difficult of the relative pitch condition. But the authors go on to state the absolute and relatively pitch information might just be processed “differently”. I couldn’t follow this argument. 3e. The P3b result was quite clear – no amplitude different but a longer latency for relative than absolute condition. 3f. From the results, the N2b and P3b were both delayed in the relative compared to absolute condition. The authors interpret the N2b as representing “target selection” and the P3b as representing change detection, or working memory or response related processing. Therefore, they conclude that target selection is delayed from relative pitch, but that change detection, working memory and response-related processing are not of themselves delayed. This argument of course depends on accurate assessment of N2b latency. 3g. I find it curious that in the conclusions, no mention is made of MMN or P3a. There is no discussion of how these two component relate to N2b and P3b in a stages of processing account. And why, for example, N2b can be delay while the following P3a is not delayed. In sum, this is an interesting study, but many questions need to be addressed before the results can be interpreted with confidence. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-20-25390R1 Change detection of auditory tonal patterns defined by absolute versus relative pitch information. A combined behavioural and EEG study. PLOS ONE Dear Dr. Coy, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Mar 05 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Qian-Jie Fu, Ph.D. Academic Editor PLOS ONE [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors have thoroughly addressed all my comments. I believe the concern about separation of MMN and N2b is most adequately addressed in Fig 3 of the response to reviewers, which directly compares the ERPs in active and passive paradigms. This figure, and some of the preceding discussion, should be included in the paper itself as further evidence of the temporal overlap between MMN and N2b components in the absolute condition. I would also recommend making clearer that the ERPs shown in column 3 are difference waves, and which waveforms are from the active and which are from the passive condition, in both the legend and the caption. I eventually figured it out but it took me a while. Otherwise I think the paper is much better, much clearer, and is ready for publication. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Change detection of auditory tonal patterns defined by absolute versus relative pitch information. A combined behavioural and EEG study. PONE-D-20-25390R2 Dear Dr. Coy, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Qian-Jie Fu, Ph.D. Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-20-25390R2 Change detection of auditory tonal patterns defined by absolute versus relative pitch information. A combined behavioural and EEG study. Dear Dr. Coy: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Qian-Jie Fu Academic Editor PLOS ONE |
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