Peer Review History
| Original SubmissionJuly 18, 2020 |
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PONE-D-20-22340 Association between maternal vegetable intake during pregnancy and allergy in offspring: Japan Environment and Children's Study (JECS). PLOS ONE Dear Dr. kohei, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Nov 21 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2.We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For more information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. In your revised cover letter, please address the following prompts: a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially sensitive information, data are owned by a third-party organization, etc.) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings as either Supporting Information files or to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. We will update your Data Availability statement on your behalf to reflect the information you provide. 3. One of the noted authors is a group or consortium [Japan Environment and Children’s Study (JECS) Group^]. In addition to naming the author group, please list the individual authors and affiliations within this group in the acknowledgments section of your manuscript. Please also indicate clearly a lead author for this group along with a contact email address. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This novel paper investigates the potential association between maternal intake of vegetables during pregnancy and the risk of a range of childhood allergic diseases. The paper seek to add new knowledge to inconsistent results on this specific topic being conducting analyses in a large well conducted and well described young cohort. The authors apply appropriate statistical models and present a range of results, which are presented in a simple concise way. However, the authors could consider an alternative presentation of results in table 3. I have only a range of minor comments and some considerations, which could be added to the discussion. Minor comments Abstract: Please add in relation to the aOR, 95% confidence intervals (95%CI) in the methods, and the results. And add the 95%CI to the presentation of results. Introduction: Who has stated that “maternal vegetable intake during pregnancy is one of the most interesting exposures? Please, reconsider the use of “most interesting” It would be relevant to add a few words on proposed mechanisms of the anti-oxidative and anti-inflammatory properties in relation to development of immune responses potentially working during fetal life – which later maybe related to development of allergic diseases. Please, add to the description of previous studies, the type of studies and range of n in the “relatively small sample sizes”. Did any of the studies showing a positive association between vegetables and allergic diseases use register data or self-reported questionnaire data? Please, add a bit more information on these studies which can be used for discussion later. Materials and methods: Line 89, In the method section, please add information in which gestational weeks the FFQ was completed. Line 95-97: it is unclear whether women who were missing information in one variable only was excluded or not. Is it correct those women who were missing values on every outcome, were excluded – not if they were missing values in one or two, then they were kept in the analyses? Nevertheless, in line 97 the analyses used a complete dataset – meaning no missing values at all? Maybe change wording to ‘missing values on one or more outcomes’ if that were the case. Line 98: please add number of observations in the multiple imputation data set. Line 102: is it possible to add a reference to the “other nationally valid regulations”? Line 106: please add mean gestational weeks of when the FFQ was completed during pregnancy. Line 107: what does the authors mean by ‘other profiles’? Please, add sufficient information in the text. Regarding vegetables groups: Please, explain the rationale for having spinach in two groups. What are the pros and cons? Please, if any cons could influence the observed associations or interpretations of results, this should be included in the discussion. Line 125: Please, add one sentence on the validity of the ISSAC tool Line 130: has the doctor’s diagnosis been validated at some point? How well is coverage of cases using the doctor diagnosis? Is there a risk of misclassification using these two tools for outcome assessments? Line 142: Please, add a sentence that the covariates were selected based on previous literature, which seems to be the case. Line 146+148: there are some uncertainity about the numbers. The remaining 80,270 do have missing data, not on all outcomes but maybe some? Please, add n for the dataset used for the amin analysis with ‘women with no missing data’ and those ‘in the multiple imputation sensitivity analyses’ The wording “ a quintile base on the energy-adjusted estimate of the intake for total vegetables” does not seem correct and is difficult to understand. Please reconsider this sentence and title for Figure 1. Table 1. In some lines, n(%) has been added to the test e.g. “Junior high school” but not by others e.g. “maternal allergic history” etc. Please, consider to be more consistent. Maybe say “Allergic disorder at age 1” instead of “at endpoint” Line 184: “for other kinds of vegetables” are to unspecific. Which vegetables are the authors referring to? Table 2 and 3. Please, try to make each column fit the text in a way that the results aOR (95%CI) can fit in one line. Makes it easier to read. In the foot note, has ‘ART’ been written fully. I think, the authors should also write fully in a foot note. Please, add that the unit is per day? Vitamin A ug/day. Also please, add n. Would it be possible to makes figures or the like of (some) results in table 3? This tables is rather long across several pages. The discussion: The authors, briefly discuss the timing of the FFQ in relation to observed findings. However, is the timing relevant in relation to the development of auto immune responses in fetal life? And is the timing irrelevant since ‘most other studies did not focus on the time frame’? The authors could discuss in more depth the ‘difficulties in assessing the asthma outcomes at age 1. Please see my questions above on the validity of outcome assessment, proc&cons Did any of the studies showing a positive association between vegetables and allergic diseases use register data or self-reported questionnaire data? How did the present study obtain the goal of being able to add significant knowledge to the existing knowledge base with this larger cohort study? Line 240: what is the prevalence of wheeze and asthma in older children? Line 277: does the authors mean? “using similar birth cohorts” or “using the same birth cohort with longer follow-up”? How would misclassification of dietary intake by the FFQ affect the observed associations? Please, add a sentence to the discussion. Reviewer #2: Dear authors, This is a very interesting paper investigating the associations between maternal diet during pregnancy and allergic diseases in the offspring at age 1. My main concern is the fact that the analysis were performed without adjusting on maternal breastfeeding, which can be a vety important factor in allergic diseases. I would also suggest to adjust on maternal supplementation during pregnancy. My minor concern is : page 7, line 88 : please delete "the" before maternal. Reviewer #3: This paper aim at assessing the association between maternal intake of vegetables and related nutrients during pregnancy with allergic diseases in offspring at age 1 year. In order to reach this aim the authors use the information provided by a cohort study on a large sample of pregnant women. The information on dietary exposures was collected by means of a Food Frequency Questionnaire, whereas health outcomes in the offspring at age 1 year through the International Study of Asthma and Allergies in Childhood questionnaire. The authors state that maternal intake of vegetables and other related nutrients during pregnancy had little or no association with the considered health outcomes in offspring at age 1 year. The paper is well written and the authors have in general used proper methods to analyze their data. However, I would like to seek clarification on some points. - Did the author perform some form of quality check on the FFQ questionnaire (for example: did they drop subjects with implausible values of estimated energy? Did they evaluate the ratio of energy intake to basal metabolic rate?)? - Due to the poor quality of the image, I could not properly understand the utility of figure 1. What does figure 1 add to the text to explain how the authors created energy-adjusted quintiles of maternal vegetable intakes/related nutrients? Maybe some important details of the statistical model could be enlightened by this figure. - The authors consider several covariates in the multivariate models. Among these covariates total energy intake is not present. Why? Even when the residual method is used, it is generally recommended to include total energy intake as a covariate in the model (see 1. Willet WC. Nutritional epidemiology 2nd ed. New York: Oxford Univercity Press; 1998; pag.275; 2. Willett W, Stampfer MJ. Total energy intake, implications for epidemiologic analyses. Am J Epidemiol. 1986;124:17‐27.) - The approach of the authors in considering the results is cautious. In fact, even if they found that some of the adjusted measures of association between quintiles of the considered dietary exposures and health outcomes were significantly different from 1.0 when compared with the lowest quintile, they chose not to consider this evidence as a straightforward clue of true association. This choice is related to the fact that the estimated adjusted ORs for the association between the dietary exposures and the considered health outcomes are close to 1. This interpretation is quite reasonable. Nevertheless, in the discussion, the authors discuss some of their results, i.e. the slightly higher risk of eczema development in the offspring for women with a higher intake of vegetables and of certain nutrients. Why the author focused their attention only on eczema? Actually, the present study suggests also that women with a higher intake of total vegetables, folate rich vegetables, green and yellow vegetables, and certain nutrients have a slightly higher risk of food allergy and of other allergies. If they think it appropriate to discuss the results concerning eczema, they should discuss the results concerning food allergy and other allergies as well. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Association between maternal vegetable intake during pregnancy and allergy in offspring: Japan Environment and Children’s Study PONE-D-20-22340R1 Dear Dr. kohei, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Calistus Wilunda, DrPH Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed Reviewer #3: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes Reviewer #3: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors have sufficiently replied to my previous questions and i believe the paper is ready for publication. The supplementary table 1 works fine, I think. I have only a few minor comments for the authors to consider. Minors Lines 306-307: “ Furthermore, misclassification of dietary intake, which could lead to underestimation, may have occurred as the FFQ was self-reported.” Does the authors mean “underestimation of the observed associations”? please, make the sentence a bit more clear/specific on what would be the consequence of misclassification of diet intake on the observed associations. Line 236: One reason for this discrepancy might be the difference in the timeframes for assessing maternal dietary intake, as several studies have shown that maternal exposure during specific pregnancy periods is associated with allergic outcomes in offspring [9, 31-33]. The authors added an important consideration, however, it would give even more information if “the specific weeks of gestation” could be mentioned: “One reason for this discrepancy might be the difference in the timeframes for assessing maternal dietary intake, as several studies have shown that maternal exposure during specific pregnancy periods (e.i. GW xx-xx) is associated with allergic outcomes in offspring [9, 31-33].” The wording seems a bit incorrect: “S1 Table. Number of each quintile of vegetables and nutrients for the outcomes of interest” Should this be changed to: “S1 Table. Number of cases per quintile of vegetables and nutrients for each outcomes of interest” ? Should be revised in the manuscript accordingly. This title of S3 should be revised to S4: “S4 Table. Relation between maternal vegetable intake and maternal allergic history” In addition, does the table show relation or prevalence? Reviewer #2: (No Response) Reviewer #3: I think that the authors have adequately addressed my previous comments, in general. The changes made in response to the reviewers improved the manuscript. As a side comment, I would point out that when I asked some additional information on the evaluation of the quality of food frequency data, I expected the authors to make changes to the analysis dataset, for example by eliminating subjects with extreme values of EI, and/or of EI/BMR. In the modified version of the paper, the authors state that the average value of EI/BMR is 1.55, this does not exclude the existence of subjects with extreme and implausible values of that ratio. Even if I am not completely satisfied with this specific answer, nonetheless I believe that the methods used in the paper are in general valid and appropriate. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No |
| Formally Accepted |
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PONE-D-20-22340R1 Association between maternal vegetable intake during pregnancy and allergy in offspring: Japan Environment and Children’s Study Dear Dr. Ogawa: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Calistus Wilunda Academic Editor PLOS ONE |
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