Peer Review History
| Original SubmissionMay 23, 2020 |
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PONE-D-20-15536 Surgical site peptidyl deaminase 4 (PAD4), a biomarker of NETosis, correlates with insulin resistance in total joint arthroplasty patients PLOS ONE Dear Dr. Schenk, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Consequently, after considering the commentaries made by three reviewers, Major Revision is requested. As you may appreciate, the reviewers agree in their concerns regarding certain issues related to sample size, methodological approach, and statistical analysis. Likewise, such a decision is justified by taking into account the publication requirements for PLOS ONE regarding that the papers must be technically sound and the data should support the conclusions. Therefore, please carefully address each of the points requested in the comments provided by the reviewers (please, see below), which can help to improve and strengthen your submission. Please submit your revised manuscript by Oct 09 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Maria Carmen Iglesias-Osma, M.D., Ph.D. Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2.This study received Institutional Review Board approval (IRB: 151506; Approved 10/22/2015) and written informed consent was obtained from each patient before the initiation of the study.' (a) Please amend your current ethics statement to include the full name of the ethics committee/institutional review board(s) that approved your specific study. (b) Once you have amended this/these statement(s) in the Methods section of the manuscript, please add the same text to the “Ethics Statement” field of the submission form (via “Edit Submission”). For additional information about PLOS ONE ethical requirements for human subjects research, please refer to http://journals.plos.org/plosone/s/submission-guidelines#loc-human-subjects-research. 3. Please provide a sample size and power calculation in the Methods, or discuss the reasons for not performing one before study initiation. 4.We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions. In your revised cover letter, please address the following prompts: a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially identifying or sensitive patient information) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings as either Supporting Information files or to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. Please see http://www.bmj.com/content/340/bmj.c181.long for guidelines on how to de-identify and prepare clinical data for publication. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. We will update your Data Availability statement on your behalf to reflect the information you provide. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: No Reviewer #3: No ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No Reviewer #2: Yes Reviewer #3: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: No Reviewer #3: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: In their manuscript titled “Surgical Site Peptidyl Deaminase 4 (PAD4), a Biomarker of NETosis, Correlates with Insulin Resistance in Total Joint Arthroplasty Patients”, Martins and colleagues measured biomarkers of NETosis in lean and obese TJA (Total Joint Arthroplasty) patients. Among the biomarkers of NETosis, only the surgical site PAD4 level was found significantly elevated in insulin resistant obese subjects, but not in insulin sensitive obese subjects, compared to lean subjects. PAD4 level also showed significant positive correlation with HOMA IR but not with BMI. This information appears new and important. The manuscript is well written and easy to read and understand. However following issues need to be critically considered: 1. The sample size was too low and the PAD4 was measured by immunoblotting, a semi-quantitative method. Therefore, the findings of correlation and regression analyses are not much convincing. More quantitative ELISA or activity assay of PAD4 would have been appropriate in this setting. 2. In the Method section, it is not clear how the skeletal muscle samples were homogenized. It is also not clear whether the total tissue extract or the nuclear fractions were collected for immunoblotting. Method of quantification of the blots was not mentioned. 3. In the statistical method section, the regression models were not clearly described. 4. In Table 3 (Supplementary Table 1), only the ‘beta’ values are shown and the actual ‘p’values are not shown. The ‘beta’ value is only about 0.2 for the dependent variable PAD4 with HOMA-IR, which is not so impressive. 5. Age in Table 1 and age, weight and BMI in Table 2 appear to be significantly different between the two groups. Please recheck the statistical analyses; and if there is any mistake please rewrite the manuscript accordingly. Reviewer #2: Neutrophil extracellular traps (NETs) have been previously shown to delay wound healing, in particular in diabetes. The authors aimed to elucidate the relationship between NETs, obesity and insulin resistance in total joint arthroplasty. While the objective of the study is sound, there are a number of concerns in methodologies and data interpretation. 1. Figure 1. Cell-free double-stranded DNA (cf-dsDNA) is no longer an acceptable assay for NETs, as it also detects non-NET extracellular DNA from other cell deaths (like authors mentioned in the discussion). Myeloperoxidase (MPO)-DNA complex or neutrophil elastase (NE)-DNA complex ELISA should be performed. Whether there are any correlations between NETs versus BMI or HOMA-IR remains unanswered. 2. Figure 2 & 3. While increased PAD4 expression in neutrophils may explain an increased propensity for neutrophils to undergo NETosis (Wong et al., 2015), tissue PAD4 level per se is NOT a biomarker of NETs / NETosis. PAD4 is constitutively expressed in neutrophils; therefore, an increase in PAD4 level in tissue may simply mean that there are more neutrophils recruited to the inflamed tissue. Western blot analysis lacks a resolution of whether PAD4 is extracellularly released in NETosis and whether it is coated on NETs. In fact, a recent study also showed a possibility that PAD4 can be expressed on cell surface independent of NETosis (Zhou et al., 2017). Therefore, determining tissue NET levels by blotting for total PAD4 and NE did not provide support to the authors’ conclusion. Immunostaining of tissues (externalized DNA co-localizing with NE, MPO or citrullinated histone H3) is essential to prove for the presence of NETs. 3. Figure 3. As for data interpretation, why NE did not go in the same trend as PAD4 needs further experimental justification. Although NETosis can occur independent of NE (Martinod et al., 2016), extracellular NE co-localizing with DNA (immunostaining) and NE-MPO complex (ELISA) are standard definition of NETs: In the end, the enzyme is expelled along with the decondensed chromatin and coated on the DNA. If NETosis does occur, the level of extracellular DNA-associated NE will increase regardless whether NE plays a role in NETosis. The current data seem to imply that NETosis may not be involved. 4. The significance of the study seems rather weak. How do the findings impact on patient care / treatment? Is there any correlation between NET levels in the surgical site (peri-operation) and post-surgical / recovery outcomes in these patients? Whether there is a causal relationship between peri-operation NET level and post-surgical outcome should also be explored. 5. Concept clarification – Higher NET content in surgical site may not necessarily link to higher risk of infection (comment on the last sentence in abstract). How NETs interact with different bacterial species in wounds is actually an open question; such generalization is therefore not justified. In fact, this notion also contradicts the introduction where authors indicate “… NET formation would be beneficial to wound health by sequestering and destroying pathogens”. 6. PAD4 is spelt wrongly throughout the manuscript. It is “peptidylarginine deiminase 4”. 7. References are duplicated (e.g. #15 and #23 are the same). Reviewer #3: The work is interesting, however, 1) As the authors mention, the main problem is the number of cases, which when divided between obese and lean, insulin resistant and insulin sensitive, finally is an n of 3 and 4, which cannot be considered significant. 2) They were able to do a postoperative follow-up to the patients to see their evolution and compare them with PAD4, if they already had these data. 3) Were knee surgeries performed with ischemia or without ischemia? This is an important piece of information to see the evolution of the patient and could also be a piece of information worth taking into account, since with ischemia / reperfusion there is a greater oxidative stress and therefore inflammation and greater ease for the formation of NETs. 4) In case the other reviewers and / or the Editor decide to accept it for publication, the title should say: "preliminary report" ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Surgical site peptidylarginine deaminase 4 (PAD4), a biomarker of NETosis, correlates with insulin resistance in total joint arthroplasty patients: A preliminary report PONE-D-20-15536R1 Dear Dr. Schenk, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Maria Carmen Iglesias-Osma, M.D., Ph.D. Academic Editor PLOS ONE |
| Formally Accepted |
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PONE-D-20-15536R1 Surgical site peptidylarginine deaminase 4 (PAD4), a biomarker of NETosis, correlates with insulin resistance in total joint arthroplasty patients: A preliminary report Dear Dr. Schenk: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Prof. Dr. Maria Carmen Iglesias-Osma Academic Editor PLOS ONE |
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