Peer Review History
| Original SubmissionAugust 12, 2020 |
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PONE-D-20-24843 Pastoralism in the highest peaks: Role of the traditional grazing systems in maintaining biodiversity and ecosystem function in the alpine Himalaya. PLOS ONE Dear Dr. Ingty, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Oct 31 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Bhoj Kumar Acharya, PhD Academic Editor PLOS ONE Additional Editor Comments: The MS addresses an important issue but there are problems associated with study design, data analysis and flow. Kindly go through the comments provided by all the three reviewers. Additionally, I have provided editorial comments in the pdf file (yellow highlighted with comments in the sticky notes). Address the comments of the reviewers and editor and resubmit the MS. Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We note that Figure 1 in your submission contain map images which may be copyrighted. All PLOS content is published under the Creative Commons Attribution License (CC BY 4.0), which means that the manuscript, images, and Supporting Information files will be freely available online, and any third party is permitted to access, download, copy, distribute, and use these materials in any way, even commercially, with proper attribution. For these reasons, we cannot publish previously copyrighted maps or satellite images created using proprietary data, such as Google software (Google Maps, Street View, and Earth). For more information, see our copyright guidelines: http://journals.plos.org/plosone/s/licenses-and-copyright. We require you to either (1) present written permission from the copyright holder to publish these figures specifically under the CC BY 4.0 license, or (2) remove the figures from your submission: 2.1. You may seek permission from the original copyright holder of Figure 1 to publish the content specifically under the CC BY 4.0 license. We recommend that you contact the original copyright holder with the Content Permission Form (http://journals.plos.org/plosone/s/file?id=7c09/content-permission-form.pdf) and the following text: “I request permission for the open-access journal PLOS ONE to publish XXX under the Creative Commons Attribution License (CCAL) CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/). Please be aware that this license allows unrestricted use and distribution, even commercially, by third parties. Please reply and provide explicit written permission to publish XXX under a CC BY license and complete the attached form.” Please upload the completed Content Permission Form or other proof of granted permissions as an "Other" file with your submission. In the figure caption of the copyrighted figure, please include the following text: “Reprinted from [ref] under a CC BY license, with permission from [name of publisher], original copyright [original copyright year].” 2.2. If you are unable to obtain permission from the original copyright holder to publish these figures under the CC BY 4.0 license or if the copyright holder’s requirements are incompatible with the CC BY 4.0 license, please either i) remove the figure or ii) supply a replacement figure that complies with the CC BY 4.0 license. Please check copyright information on all replacement figures and update the figure caption with source information. If applicable, please specify in the figure caption text when a figure is similar but not identical to the original image and is therefore for illustrative purposes only. The following resources for replacing copyrighted map figures may be helpful: USGS National Map Viewer (public domain): http://viewer.nationalmap.gov/viewer/ The Gateway to Astronaut Photography of Earth (public domain): http://eol.jsc.nasa.gov/sseop/clickmap/ Maps at the CIA (public domain): https://www.cia.gov/library/publications/the-world-factbook/index.html and https://www.cia.gov/library/publications/cia-maps-publications/index.html NASA Earth Observatory (public domain): http://earthobservatory.nasa.gov/ Landsat: http://landsat.visibleearth.nasa.gov/ USGS EROS (Earth Resources Observatory and Science (EROS) Center) (public domain): http://eros.usgs.gov/# Natural Earth (public domain): http://www.naturalearthdata.com/ [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No Reviewer #3: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This study is very interesting to scientifically validate to show the impact of grazing exclusion policy of the Department of Forest and Environment, Government of Sikkim. Grazing in the forests starting from the Sub-tropical, temperate, alpine forests and the Trans Himalayan rangelands was and is a traditional system of animal farming in the Sikkim Himalaya. During 1998-2005 the Department of Forest and Environment, Government of Sikkim imposed “Ban on Grazing” in Protected Areas and Reserved Forests in the sub-tropical, temperate and alpine areas of East, South, West and North Sikkim with the objective of conserving the biodiversity and improvement of degraded forest. Grazing was considered as detrimental to forest, and biodiversity, illegal activities and extraction. While the scientific validation of the impact of grazing on forest and biodiversity deterioration was not available with the policy implementing agencies. Therefore, although carried out only in a specific location in North Sikkim, this study has provided scientific knowledge and understanding that grazing exclusion will result into loss of species richness and decline ecosystem functioning. Thus, this study can be a basis to the policy implementing agencies for revisiting the “Grazing Ban Policy” and develop a new policy framework. Equally, this study will also provide opportunities for the researcher, scientists and planners to take forward the similar study in other parts of Sikkim in particular or the Himalaya at large. Specific comments Abstract: In the abstract you mentioned “This paper explores the impact of the traditional pastoral system on high elevation plant species in Lachen valley, one of the few regions of Sikkim where the grazing ban was not implemented.” Clearly mention in the abstract which were the current grazing stands and which were the ungrazed forests or plots or treatments you selected in your study. You have not mentioned this and thus following your previous sentence of the study site in the Lachen Valley your sentence speaking about your result does not match in the subsequent sentences. Please give a clear recommendation as to what the policy makers should do. Do they need to revisit their policy, develop strategic short-term and long term strategic action plans through government notification and initiate regulated grazing allowing the herders to graze livestock?? Introduction The last paragraph should go to the discussion section. 1. The author can develop a GIS based Hyposometric map with the location of the sampled elevations map along the elevation 3000-4500 m with drainage systems, name of the study sites etc. in a DEM. 2. How did you differentiate the grazing with the domestic ungulates and the wild ungulates ? 3. When and where was the fencing laid, was that laid in all the study sites ? 4. What was the study period of this research ? 5. Which were the livestock, domestic as well as wild ungulates, season of grazing, and the season of your study, is not clear. 6. While the grazed stands were found to be with higher species richness in all the elevation study sites, please give a list of common palatable and unpalatable species found in both the grazed and unglazed sites. This will help policy maker to understand the conservation of important, or the threatened species. 7. Please give number of Dokpa households under Lachen Dzumsa (Gurudongmar-Tsholhamu, and Muguthang), as you have said the population is declining. You have mentioned in the last paragraph before the conclusion section that over a dozen Dokpas are there (???). 8. It is important to note the stocking density to identify the impact of grazing, please justify your result by showing the stocking density in the study elevations. Did you come across any location of overstocking ?? 9. Which species were dominant in the three study elevations, as you said the dominant species were reduced due to grazing. Were they all palatable ? 10. Any information on Pray-Predator relationship, impact of grazing on wildlife, livestock depredation etc. will add value to the MS. 11. There is a notion that the Human-Wildlife conflict has increased after ban on grazing, please justify if any such information could be generated during the course of this study. 12. What was the species composition in the grazed plots, how did you identify the species as the palatable species are already grazed by animals ? 13. Clearly mention in your result the species composition based on their season of appearances, snowfall period 14. It would be nice to give high resolution pictures of the stand of both grazed and un-grazed stands. 15. What kind anthro0pogenic pressure were there in grazing stands other than grazing ? 16. Also show in your result what is the species richness in the three elevations ? 17. How did you measure ANPP in the grazed and ungrzaed plots, as the plant biomass of grazed plots were eaten up by animals ? 18. Which species do you think are dispersed by animals ? Reviewer #2: General Comments: 1. Author should give special attention in the spellings of the botanical names of the plant species, grammar and punctuation 2. Repetition of words encountered in places which needs to be checked Specific Comments: 1. Abstract • Such long introduction in abstract is not required. Just restrict to one or two sentences. • Point out the methods applied for the study in one or two sentences • Highlight the most significant findings in the result section in one or two sentences instead of generalizing it. For eg., The multidimensional scaling and ANOSIM (Analysis of Similarities) pointed to significant differences in plant species assemblages in grazing and ungrazed areas. Significant at what level? 2. Introduction • The author have mentioned in third paragraph (line 6 – 8) that “Open grazing was phased out over the next six years in all reserved forests with exception of Lachen and Lachung valley and alpine pastures in the Kangchenzonga National Park”. Logically, grazing is strictly not allowed in National Parks. This statement may negatively impact the UNESCO’s World Heritage Site status of the KNP. Author should avoid using such statement or should provide supporting references. • The last paragraph in the introduction section looks more like a part of the discussion based on the present study. Hence, move the paragraph to the discussion section. 3. Materials and Methods • Normally, above 2000 m asl elevation are considered as higher elevation. Therefore, it would not be appropriate to label the elevation above 3000 m asl as lower elevation zone, middle elevation zone or high elevation zone. Try to find some suitable terminology or replace it with lower zone , middle zone and upper zone duly mentioning the elevation range in the text as well as in the map. • Method is vague. How is it possible to have both grazed and un-grazed area in the same plot of 30 x 30 m? Needs to be clarified. Further, the unit must be accurate. Either write 30 m x 30 m or replace it with 30 x 30 sq. m. • Author have mentioned the establishment of 12 movable enclosure cages to study the biomass growth. It is not clear weather all the cages were set up in the same plot at a time. If not then, it is important to mention as how many cages were set up in each plot. • Major rewriting of the methods under the sub-heading “Impact of grazing…..”, a part of the vegetation sampling section is needed to clear the confusion. • Under the subheading 1, 2 para, line 4: The standing biomass of was……..what does it mean? please specify or correct the statement. • Data analysis: Table1 & 2 is the part of the result section; hence, remove the mention of table 1 & 2 from the data analysis section. • What is the logic behind calculating Shannon Index and Simpson diversity index? As both the indexes calculates the diversity taking into account the species richness and the relative abundance of the species. It is better if the author calculates the dominance index. 4. Results Species diversity indices: • Why the same result is depicted in table as well as the box plot (Fig 2 A-D, Table 1). Either use table or figure. • Para 1, line no.: 8 & 9. Author have mentioned that “Grazing had a significant (ANOVA p<0.001) effect all diversity indices in each elevation zone and all elevation zones combined but from table 2, it is clear that the effect of grazing is not significant for diversity indices in higher elevation. Address this mistake. • Para 1, last 3 lines. Rewrite the sentence “Unlike grazing, elevation did not have a significant effect (ANOVA p<0.05)diversity indices (fig. 2G-I, table 2) except S (fig. 2F, table 2)” as “Unlike grazing, elevation did not have a significant effect on diversity indices (Fig 2G-I) except S (p<0.05) [Fig. 2F, table 2)”. • Para 2. Line no. 2-3. The sentence is unclear whether the author is trying to compare the species composition between grazed and un-grazed treatment in different zones or amongst the replicates of grazing treatment in different zones. Needs rewriting. • ANPP: Rewrite the sentence “The mean ANPP for all grazed quadrates (all elevation zones combined), lower and middle elevation zone grazed quadrates was highest in July (Fig 2K) and in the higher elevation zone grazed quadrates in August (Fig 2K)” as “The mean ANPP was highest in July for all grazed quadrates in lower zone, middle zone and all zones combined but it was highest in August in higher zone (Fig 2 K)”. 5. Discussion • It should focus more on discussing the result of the present study duly supported by the relevant studies in other Himalayan region. Needs major rewriting especially the first two parts. Reviewer #3: The paper highlights an interesting phenomenon of imposing a ban on grazing in high altitude pastures. Such bans were imposed with an understanding that removing cattle/other grazers from pastures will help reinstate the diversity of vegetation communities in alpine meadows. However, recently more studies globally are finding that there is a fine line between overgrazing and no grazing, to maintaining diversity in pastures. The author has researched an area, both in location and concept, which is important, especially in light of the changing climate and the associated management policies influencing pastoralism. The manuscript has been written well and the research design appears to be rigorous. However, the description I believe is a little confusing. The way I understood the design is: Elevation: Low, Middle, High Blocks: G (grazed) and U (ungrazed) Replicates: 3/elevation [3x3 = 9] Plots: 30x30m, one per block [total = 9] This is confusing – was the 30x30m plot equally straddling G and U areas? Sampling quadrats: 24 per block (12G and 12U) [24, 1x1m quadrats/elevation, and a total of 216 for the study – while implied (perhaps), this should be mentioned in the text] If this is correct, a simple chronological statement or a schematic of the levels and arrangement will make following the experimental set-up easy for readers. One of my major concerns with the manuscript is the analyses carried out with the diversity values. Here the author has used a variety of diversity measures – Shannon entropy, Simpson concentration, and Pielous’s evenness. Nothing is alarming about these indices by themselves, but the problem arises once these values are further analyzed, say using an ANOVA. First off, these indices are limited in range – usually between 0 and 1, for Shannon’s entropy when normalized, for example; exhibiting a floor-ceiling effect and violating the assumptions of a traditional ANOVA. This often leads to wrong results and comparisons. Details of this problem may be further understood by reviewing the paper by Lou Jost in Oikos 2006 – Diversity and Entropy. There are methods suggested in this paper that makes comparing entropies more meaningful. Therefore, instead of using an ANOVA to tease apart the difference among treatments, I suggest that the author use a more comprehensive and inclusive algorithm such as the DER – for comparing species diversity. See Guisande et al. 2017. This can be done in R (package EcoIndR). These are more contemporary techniques and overcome the flaws of other traditional comparison techniques. Please see attached an annotated content extracted pdf (lit rev not included) of the manuscript for minor edits that will help the paper read well. Other than that, the research represented by the manuscript is timely and important in understanding ways of restoring the plant diversity of the alpine regions of the Himalaya and elsewhere, especially using adaptive management policies. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: DR GHANASHYAM SHARMA Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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PONE-D-20-24843R1 Pastoralism in the highest peaks: Role of the traditional grazing systems in maintaining biodiversity and ecosystem function in the alpine Himalaya. PLOS ONE Dear Dr. Ingty, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Dec 31 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Bhoj Kumar Acharya, PhD Academic Editor PLOS ONE Editor Comments: I have carefully evaluated the revised MS along with the response to comments provided by the author. The author successfully revised the MS based on the comments of the Editor and all the three reviewers. Now the MS is in better shape but I still find some minor issues with the MS. Hence, I suggest the author to make necessary correction (as per the suggestion provided in the attached pdf file with yellow mark and sticky note). Additionally, there are lots of typos and grammar here and there. Similarly, uniformity should also be followed. Also check the list of references thoroughly and make them complete. Figure 1 (map of study area) need revisit. I suggest the author to read the MS more critically and make it error free (typos, grammar, uniformity, technicalities, etc). Once done, it may be accepted without external review. [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 2 |
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Pastoralism in the highest peaks: Role of the traditional grazing systems in maintaining biodiversity and ecosystem function in the alpine Himalaya. PONE-D-20-24843R2 Dear Dr. Ingty, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Bhoj Kumar Acharya, PhD Academic Editor PLOS ONE |
| Formally Accepted |
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PONE-D-20-24843R2 Pastoralism in the highest peaks: Role of the traditional grazing systems in maintaining biodiversity and ecosystem function in the alpine Himalaya. Dear Dr. Ingty: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Bhoj Kumar Acharya Academic Editor PLOS ONE |
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