Peer Review History

Original SubmissionOctober 20, 2020
Decision Letter - Giuseppe Remuzzi, Editor

PONE-D-20-32945

Prevalence and factors associated with multimorbidity among primary care patients with decreased renal function.

PLOS ONE

Dear Dr. Hirst,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

The manuscript focuses on an interesting topic. The study, however, presents some important shortcomings that preclude at this stage to draw meaningful conclusions, and should be addressed. To mention few of them, i) need to describe laboratory methodology, i.e. serum creatinine assay and its traceability to IDMS and authors’ methodology for detecting raised ACR of > 3 mg/mmol; ii) unclear the authors’ sampling methodology; iii) concern about the fact that transiently impaired kidney function was not defined nor they have indicated baseline measures or the magnitude of the transient impairment; iv) need to present results with subheadings for better reading; v) need to compare authors’ data locally with national datasets as well as international registry reports like Australian, Japanese, Germany, or European CKD data, and discuss the implications in detail.

Please submit your revised manuscript by Jan 03 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.
  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.
  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols

We look forward to receiving your revised manuscript.

Kind regards,

Giuseppe Remuzzi

Academic Editor

PLOS ONE

Journal Requirements:

When submitting your revision, we need you to address these additional requirements.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at

https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and

https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

2. Please provide additional details regarding participant consent. In the ethics statement in the Methods and online submission information, please ensure that you have specified (i) whether consent was informed and (ii) what type you obtained (for instance, written or verbal, and if verbal, how it was documented and witnessed). If your study included minors, state whether you obtained consent from parents or guardians. If the need for consent was waived by the ethics committee, please include this information.

If you are reporting a retrospective study of medical records or archived samples, please ensure that you have discussed whether all data were fully anonymized before you accessed them and/or whether the IRB or ethics committee waived the requirement for informed consent. If patients provided informed written consent to have data from their medical records used in research, please include this information.

3. We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions.

In your revised cover letter, please address the following prompts:

a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially identifying or sensitive patient information) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent.

b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings as either Supporting Information files or to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. Please see http://www.bmj.com/content/340/bmj.c181.long for guidelines on how to de-identify and prepare clinical data for publication. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories.

We will update your Data Availability statement on your behalf to reflect the information you provide.

4. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information

5. Your ethics statement should only appear in the Methods section of your manuscript. If your ethics statement is written in any section besides the Methods, please move it to the Methods section and delete it from any other section. Please ensure that your ethics statement is included in your manuscript, as the ethics statement entered into the online submission form will not be published alongside your manuscript.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Partly

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: No

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: I congratulate the authors for such a nice study. It's important to delineate the burden of CKD and multi-morbidity at primary care level.

I have few suggestions

1. The presentation of results could be sub-headings for better reading. For example if the results are presented as Overall cohort, CKD, Non CKD and Male and female. I found that there was lot of information, especially % all over the place and I moved backwards and forwards to read.

2. This data from primary care is very important and actually define a more milder cohort of CKD. If you take an average 74 year old white (98%) UK resident with hypertension, obesity and CKD as the top co-morbidities with rest of the conditions at much lower percentages including diabetes, cardiac and other vascular conditions, as seen in your data, this group represents a milder form of disease compared to any group of CKD patients seen in speciality renal practices. For example in out cohort in Australia ( 90% Caucasians) seen in specialist clinics, Obesity is >50%, Diabetes is 44%, hypertension 91%, coronary artery disease 25% and other vascular complications in the range of 10%. (https://doi.org/10.1111/nep.13567). Similar is the case in other CKD registry reports. The implications of these comparisons with other international cohorts are huge. Either you evaluated a milder form of disease or your primary care programs are working very well so much so the CKD patients are managed very well at primary care level and mulitmorbidity profile is much contained and better. I suggest that you compare your data locally with national datasets as well as international registry reports like Australian, Japanese, German or European CKD data. I think your data send a much powerful message regarding the success of primary care in your country.

Reviewer #2: Thank you for the opportunity to review this paper.

There are methodological issues which I believe should be addressed.

One such issue you describe in your limitations (your population is not representative of the UK population and findings cannot therefore be extrapolated to the general population).

You must describe laboratory methodology ie serum creatinine assay and its traceability to IDMS and your methodology for detecting a raised ACR of > 3mg/mmol.

You must also describe your sampling methodology - when were blood samples taken for serum creatinine analysis, were they fasted or non-fasted (relationship to a protein containing meal); when were urine samples for ACR testing taken; were samples stored before analysis.

You have not defined transiently impaired kidney function nor have you indicated baseline measures or the magnitude of the transient impairment.

Although correct to say that any test has both physiological and analytical variability without detailing the conditions under which the test sample is taken, the assay used or the magnitude of the abnormal result it is impossible to draw meaningful conclusions.

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: Yes: Sree K Venuthurupalli

Reviewer #2: Yes: P E Stevens

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Revision 1

Reviewer #1:

I congratulate the authors for such a nice study. It's important to delineate the burden of CKD and multi-morbidity at primary care level.

I have few suggestions

Thank you for your comments

1. The presentation of results could be sub-headings for better reading. For example if the results are presented as Overall cohort, CKD, Non CKD and Male and female. I found that there was lot of information, especially % all over the place and I moved backwards and forwards to read. We have restructured the results to findings in the full cohort from the CKD and non-CKD populations.

We have also included another subheading: “Differences by GFR-estimating equation and sex” to make comparisons between the MDRD and CKD-EPI equations and males and females.

2. This data from primary care is very important and actually define a more milder cohort of CKD. If you take an average 74 year old white (98%) UK resident with hypertension, obesity and CKD as the top co-morbidities with rest of the conditions at much lower percentages including diabetes, cardiac and other vascular conditions, as seen in your data, this group represents a milder form of disease compared to any group of CKD patients seen in speciality renal practices. For example in out cohort in Australia ( 90% Caucasians) seen in specialist clinics, Obesity is >50%, Diabetes is 44%, hypertension 91%, coronary artery disease 25% and other vascular complications in the range of 10%. (https://doi.org/10.1111/nep.13567). Similar is the case in other CKD registry reports. The implications of these comparisons with other international cohorts are huge. Either you evaluated a milder form of disease or your primary care programs are working very well so much so the CKD patients are managed very well at primary care level and mulitmorbidity profile is much contained and better. I suggest that you compare your data locally with national datasets as well as international registry reports like Australian, Japanese, German or European CKD data. I think your data send a much powerful message regarding the success of primary care in your country. Thank you for your comments.

We have changed the discussion to include a comparisons with literature, first in the UK followed by international settings.

This section in the Discussion has now been substantially revised.

Reviewer #2:

Thank you for the opportunity to review this paper.

There are methodological issues which I believe should be addressed..

One such issue you describe in your limitations (your population is not representative of the UK population and findings cannot therefore be extrapolated to the general population).

The reviewer has pointed out a concern about the generalisability. We have compared our results with those from other studies and suggested reasons for differences in prevalence of multimorbidity and individual comorbidities. We have included a sentence to explain that we have compared with other studies: “To be transparent about the generalisability, we have discussed the results in the context of other studies, both in the UK and internationally.”

You must describe laboratory methodology ie serum creatinine assay and its traceability to IDMS and your methodology for detecting a raised ACR of > 3mg/mmol.

We have clarified these points in the text: “Non-fasting blood and urine samples collected at the baseline study visit were analysed within 24 hours across two laboratories using identical albumin-creatinine ratio (ACR) and isotope dilution mass spectrometry (IDMS)-traceable enzymatic creatinine assays, and reported using the Modification of Diet in Renal Disease (MDRD) eGFR. Both samples for each patient were processed in the same laboratory. The remaining 277 (32.2%) participants did not have a CKD diagnosis, but had one test with either a decreased eGFR (<60 ml/min/1.73m2) or a raised non-fasting urinary ACR (>3 mg/mmol), suggesting transiently impaired renal function, or may potentially arise from variability in analytical methods in those near diagnostic thresholds.”

You must also describe your sampling methodology - when were blood samples taken for serum creatinine analysis, were they fasted or non-fasted (relationship to a protein containing meal); when were urine samples for ACR testing taken; were samples stored before analysis.

Please see above

You have not defined transiently impaired kidney function nor have you indicated baseline measures or the magnitude of the transient impairment.

The participants we classified as having transiently impaired renal function had a single eGFR or ACR test over the diagnostic threshold, but did not meet the KDIGO criteria for sustained impairment. We have included these participants in our cohort as we believe that they may be more likely to progress to CKD than the general population. We have removed most references to transiently impaired renal function in the text and instead refer to this population as non-CKD.

Details of this population, as well as other characteristics of the participants are given in a paper published earlier this year. Rather than repeat these, we have referred the reader to the paper: “More details of the population included in this analysis are given in our paper summarising the characteristics from the baseline study visit.(28)”

Although correct to say that any test has both physiological and analytical variability without detailing the conditions under which the test sample is taken, the assay used or the magnitude of the abnormal result it is impossible to draw meaningful conclusions

We hope the more detailed methods given above have served to clarify this.

Attachments
Attachment
Submitted filename: Response to reviewers comments.docx
Decision Letter - Giuseppe Remuzzi, Editor

Prevalence and factors associated with multimorbidity among primary care patients with decreased renal function.

PONE-D-20-32945R1

Dear Dr. Hirst,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

The revised manuscript is definitely improved. The authors have properly addressed all the points and comments raised by the reviewers.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Giuseppe Remuzzi

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: (No Response)

Reviewer #2: (No Response)

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: (No Response)

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Thank you very much for addressing my feedback and comments. The current manuscript is definitely an improved version. I have no further comments

Reviewer #2: (No Response)

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: Yes: Sree Krishna Venuthurupalli

Reviewer #2: No

Formally Accepted
Acceptance Letter - Giuseppe Remuzzi, Editor

PONE-D-20-32945R1

Prevalence and factors associated with multimorbidity among primary care patients with decreased renal function.

Dear Dr. Hirst:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Prof. Giuseppe Remuzzi

Academic Editor

PLOS ONE

Open letter on the publication of peer review reports

PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.

We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.

Learn more at ASAPbio .