Peer Review History
| Original SubmissionDecember 14, 2020 |
|---|
|
PONE-D-20-39293 Identification of Celastrol as a novel HIV-1 Latency Reversal Agent by an Image-Based Screen PLOS ONE Dear Dr. Rice, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Mar 21 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Yuntao Wu Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. We note that the grant information you provided in the ‘Funding Information’ and ‘Financial Disclosure’ sections do not match. When you resubmit, please ensure that you provide the correct grant numbers for the awards you received for your study in the ‘Funding Information’ section. 3. PLOS ONE now requires that authors provide the original uncropped and unadjusted images underlying all blot or gel results reported in a submission’s figures or Supporting Information files. This policy and the journal’s other requirements for blot/gel reporting and figure preparation are described in detail at https://journals.plos.org/plosone/s/figures#loc-blot-and-gel-reporting-requirements and https://journals.plos.org/plosone/s/figures#loc-preparing-figures-from-image-files. When you submit your revised manuscript, please ensure that your figures adhere fully to these guidelines and provide the original underlying images for all blot or gel data reported in your submission. See the following link for instructions on providing the original image data: https://journals.plos.org/plosone/s/figures#loc-original-images-for-blots-and-gels. In your cover letter, please note whether your blot/gel image data are in Supporting Information or posted at a public data repository, provide the repository URL if relevant, and provide specific details as to which raw blot/gel images, if any, are not available. Email us at plosone@plos.org if you have any questions. 4. We note that you have included the phrase “data not shown” in your manuscript. Unfortunately, this does not meet our data sharing requirements. PLOS does not permit references to inaccessible data. We require that authors provide all relevant data within the paper, Supporting Information files, or in an acceptable, public repository. Please add a citation to support this phrase or upload the data that corresponds with these findings to a stable repository (such as Figshare or Dryad) and provide and URLs, DOIs, or accession numbers that may be used to access these data. Or, if the data are not a core part of the research being presented in your study, we ask that you remove the phrase that refers to these data. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: In this publication by Liu et al, has found a new class of HIV-1 Latency Reversing Agent (LRA), namely celastrol, following the screening of a natural compound library. The authors very convincingly demonstrated that celastrol quite selectively stimulates latently infected T cells, but not much to the uninfected resting primary CD4+ T cells. However, the precise underlying mechanism through which celastrol works is under investigation. The Rice lab has contributed enormously to the field of HIV transcription and latency, by doing a number of seminal studies. This publication marks the first set of results, which are very exciting and groundbreaking. In this investigation, for disrupting as minimal as possible the cellular state during experimentation, authors used a novel image-based assay. Overall, this is a very well controlled and organized ongoing study. In this manuscript authors have presented their initial results. Authors convincingly demonstrate the strong synergistic activity of celastrol with other LRAs, however, defining of the underlying molecular mechanism is still under investigation. Major Concern: • Given the fact that celastrol synergizes with other LRAs in reactivating latent HIV, it will be interesting to check if celastrol enhances the cell/nuclear translocation of drugs/factors. • Interestingly, celastrol inhibits NF-kB, and reduces Cyclin T1 levels, but still able to enhance HIV transcription, indeed directing towards a novel mechanism for HIV transcription. I will be crucial to show if celastrol also enhance HIV replication in your system. Minor Concern: • Please clearly indicate which NF-kB (p65) residue was assessed for determining the NF-kB phosphorylation. • Line 75 of page-5 needs editing, maybe they want to say” An important property of any LRA is the absence of significant resting T cell activation, an activity that may induce systemic inflammation”. • Line 294 of page-14 needs editing, maybe authors want to add inhibition in the sentence “Additionally, celastrol has been reported to INHIBIT HIV-1 Tat activation of viral gene expression directed by the viral LTR in the U937 cell line [35]”. Reviewer #2: The current manuscript from Rice and colleagues titled “Identification of Celastrol as a novel HIV-1 Latency Reversal Agent by an Image- Based Screen” describes a new and novel compound that may reverse HIV gene expression along with other LRAs. Here the authors used an image-based assay for compounds that minimally activate primary CD4+ T cells isolated from healthy donors and screened a natural compound library and identified celastrol, a pentacyclic terpenoid, as a novel LRA. Celastrol induced a limited amount of aggregation of CD4+ T cells (Low CD25 and CD69 induction) from both donors and functioned additively with JQ1, vorinostat, romidepsin, and bryostatin. Interestingly, Cyclin T1 was strongly down-regulated when adding celastrol in Jurkat 2D10 cells. Overall, the manuscript looks interesting but rather incomplete. It is not clear what is the mechanism of activation for Celastrol, since it decreases phospho-NFKB in both cell lines and donor samples. Also, I am not convinced that the combination drug treatments are not toxic over time. In fact, if the cells are starting to die in 24-48 hrs, that would explain why the virus gets activated and gets out of the cells. Finally, the authors should look for presence of short TAR RNA in their treated samples which can soak up the Tat from the system. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
|
| Revision 1 |
|
Identification of Celastrol as a novel HIV-1 Latency Reversal Agent by an Image-Based Screen PONE-D-20-39293R1 Dear Dr. Rice, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Yuntao Wu Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
|
PONE-D-20-39293R1 Identification of Celastrol as a novel HIV-1 Latency Reversal Agent by an Image-Based Screen Dear Dr. Rice: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Yuntao Wu Academic Editor PLOS ONE |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .