Peer Review History
| Original SubmissionMay 6, 2020 |
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PONE-D-20-13304 Metabolomic Study of Marine Streptomyces sp.: Secondary Metabolites and the Production of Potential Anticancer Compounds PLOS ONE Dear Dr. Marucci Pereira Tangerina, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. MS is now reviewed and we believe this MS needs significant corrections before we consider this MS for publication in PLOS One. Kindly do the needful changes as suggested by the reviewers and submit revised MS. Please submit your revised manuscript by Sep 21 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Vijai Gupta, PhD in Microbiology Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. 3. We note that you have included the phrase “data not shown” in your manuscript. Unfortunately, this does not meet our data sharing requirements. PLOS does not permit references to inaccessible data. We require that authors provide all relevant data within the paper, Supporting Information files, or in an acceptable, public repository. Please add a citation to support this phrase or upload the data that corresponds with these findings to a stable repository (such as Figshare or Dryad) and provide and URLs, DOIs, or accession numbers that may be used to access these data. Or, if the data are not a core part of the research being presented in your study, we ask that you remove the phrase that refers to these data. Additional Editor Comments (if provided): MS is now reviewed and we believe this MS needs significant corrections before we consider this MS for publication in PLOS One. Kindly do the needful changes as suggested by the reviewers and submit revised MS. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: It is a good work which needs to be published in Plos One after suggested revisions. The manuscript revolves around the drugs derived from the marine bacteria. Variation in the expression of surugamides with increase in time-points needs more discussion. In addition to bacteria, please include a line of discussion on about the other marine endophytic microorganisms which serve as a great source of cytotoxic compounds. This information has been thoroughly discussed in following articles which may be cited. 1. Uzma et al., Endophytic Fungi-Alternative Sources of Cytotoxic Compounds: A Review, PMID: 29755344, DOI: 10.3389/fphar.2018.00309. 2. Pandey A. (2019) Pharmacological Potential of Marine Microbes. In: Arora D., Sharma C., Jaglan S., Lichtfouse E. (eds) Pharmaceuticals from Microbes. Environmental Chemistry for a Sustainable World, vol 28. Springer, Cham 3. Bramhachari P.V., Anju S., Sheela G.M., Komaraiah T.R., Venkataiah P., Prathyusha A.M.V.N. (2019) Secondary Metabolites from Marine Endophytic Fungi: Emphasis on Recent Advances in Natural Product Research. In: Singh B. (eds) Advances in Endophytic Fungal Research. Fungal Biology. Springer, Cham Inclusion of Discussion section is essential to provide a comprehensive view to the readers about the interpretation of results and literature. Typographical errors must be rectified Reviewer #2: Dear Authors, The work represented is quite extensive and elaborate; which has made my work as a reviewer quite easy. The data mining efforts along with biological activity verification's is the best way forward in the quest for unique compounds. Marine actinobacteria is one of most current area of research and hence kudoos for exploring it. Having said that there are a few minor queries and suggestions from my part regarding the work. (a) Why don't you add a supplementary file with respect to the biochemical profile and morphological characteristics of Streptomyces sp. BRB081 along with its morphological image. I advise you to do so given the uniqueness of this strain and because its not been identified to the species level (b) The 16S rRNA gene sequence and whole genome analysis data availability in GenBank NCBI with its accession no is missing. Kindly add them for authenticity. Without this the data mining is irrelevant and future comparison studies and uniqueness will be less explored. (c) Cyto-Toxicity studies has been carried out on colon adenocarcinoma cell line (HCT-116 ATCC CCL-247). Is there a reason only this particular cell lines were chosen. Kindly justify? (d) Surugamides is the particular secondary metabolite highlighted in this study. Kindly compare this compound availability, quantification and activity among other streptomyces genera, especially amongst the marine actinobacteria globally. (e)7th day old Streptomyces sp. BRB081 extracts has been explored extensively in this study. Is there a basis why only 7th day of culture inocula should be the one to be explored. What happens to the secondary metabolite secretions on an advanced days of incubation? I will emphasis deeply on query (b). Good Luck and try to answer to these queries with an open and scientific mind. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Vincent Vineeth Leo [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-20-13304R1 Metabolomic Study of Marine Streptomyces sp.: Secondary Metabolites and the Production of Potential Anticancer Compounds PLOS ONE Dear Dr. Marucci Pereira Tangerina, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Manuscript "Metabolomic Study of Marine Streptomyces sp.: Secondary Metabolites and the Production of Potential Anticancer Compounds" needs minor revision before we may consider this MS for publication in PLOS One. Kindly do the needful corrections and submit a point-wise response. Please submit your revised manuscript by Jan 07 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Vijai Gupta, PhD in Microbiology Academic Editor PLOS ONE Additional Editor Comments (if provided): Manuscript "Metabolomic Study of Marine Streptomyces sp.: Secondary Metabolites and the Production of Potential Anticancer Compounds" needs minor revision before we may consider this MS for publication in PLOS One. Kindly do the needful corrections and submit a point-wise response. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors have adequately answered the questions raised by this reviewer. The manuscript can be accepted Reviewer #2: Dear Authors, The reviewer comments made were all addressed up-to certain standards. I understand that covid has prevented you from carrying out full fledged lab analysis. I have still found just a minor correction in the abstract prepared. Here in abstract its written "extractions of mycelia and broth" (Line 24-25). But what kind of extraction is not specified. Is it solvent based secondary metabolite extraction?. Then it should be mentioned. Also line 25 its written "crude extracts were analyzed"; what type of solvent based crude extract did u obtain? was it methanol extract or ethyl:acetone extract? Kindly specify, because such ambiguous statements are to be avoided. Also one small concern the accession number provided in the manuscript "Streptomyces sp. BRB081 (GenBank accession number JACVQE000000000)" is not to be found in the NCBI GenBank database. Kindly re-verify this accession no. as this number provided might have been a temporary depository number. Rectify these at the earliest. Good luck ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Vincent Vineeth Leo [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Metabolomic Study of Marine Streptomyces sp.: Secondary Metabolites and the Production of Potential Anticancer Compounds PONE-D-20-13304R2 Dear Dr. Marucci Pereira Tangerina, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Vijai Gupta, PhD in Microbiology Academic Editor PLOS ONE Additional Editor Comments (optional): All the comments have been addressed. Reviewers' comments: |
| Formally Accepted |
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PONE-D-20-13304R2 Metabolomic Study of Marine Streptomyces sp.: Secondary Metabolites and the Production of Potential Anticancer Compounds Dear Dr. Tangerina: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Vijai Gupta Academic Editor PLOS ONE |
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